RNA–Protein interactions for RNA: ENST00000414675.6

LRCH3-202, Transcript of leucine rich repeats and calponin homology domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LRCH3, Length 2,299 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3-202ENST00000414675 NISCHQ9Y2I1 1504 aa33.61■■■□□ 2.97
LRCH3-202ENST00000414675 CCDC180Q9P1Z9 1646 aa28.95■■■□□ 2.22
LRCH3-202ENST00000414675 ZCCHC6Q5VYS8 1495 aaKnown RBP28.34■■■□□ 2.13
LRCH3-202ENST00000414675 SHROOM4Q9ULL8 1493 aa28.02■■■□□ 2.08
LRCH3-202ENST00000414675 DCAF8L2P0C7V8 631 aa27.75■■■□□ 2.03
LRCH3-202ENST00000414675 DCAF1Q9Y4B6 1507 aa27.66■■■□□ 2.02
LRCH3-202ENST00000414675 ABCC9O60706 1549 aa27.23■■□□□ 1.95
LRCH3-202ENST00000414675 SUPT5HO00267 1087 aaKnown RBP27.18■■□□□ 1.94
LRCH3-202ENST00000414675 MYO15BQ96JP2 1530 aa27.09■■□□□ 1.93
LRCH3-202ENST00000414675 SCRIBQ14160 1630 aa26.89■■□□□ 1.9
LRCH3-202ENST00000414675 NACADO15069 1562 aa26.84■■□□□ 1.89
LRCH3-202ENST00000414675 RB1CC1Q8TDY2 1594 aa26.51■■□□□ 1.83
LRCH3-202ENST00000414675 RSF1Q96T23 1441 aaPredicted RBP26.33■■□□□ 1.81
LRCH3-202ENST00000414675 CHIC1Q5VXU3 224 aa26.25■■□□□ 1.79
LRCH3-202ENST00000414675 CECR2Q9BXF3 1484 aa26.2■■□□□ 1.78
LRCH3-202ENST00000414675 UNC13AQ9UPW8 1703 aa26.16■■□□□ 1.78
LRCH3-202ENST00000414675 MROH2BQ7Z745 1585 aa26.07■■□□□ 1.76
LRCH3-202ENST00000414675 WIZO95785 1651 aa25.91■■□□□ 1.74
LRCH3-202ENST00000414675 BAZ1AQ9NRL2 1556 aaPredicted RBP25.86■■□□□ 1.73
LRCH3-202ENST00000414675 BICRAQ9NZM4 1560 aa25.83■■□□□ 1.73
LRCH3-202ENST00000414675 PABPN1Q86U42 306 aaKnown RBP eCLIP25.75■■□□□ 1.71
LRCH3-202ENST00000414675 SMARCA4P51532 1647 aa25.73■■□□□ 1.71
LRCH3-202ENST00000414675 TOP2AP11388 1531 aaKnown RBP25.53■■□□□ 1.68
LRCH3-202ENST00000414675 TRIM41Q8WV44 630 aa25.4■■□□□ 1.66
LRCH3-202ENST00000414675 EIF4G1Q04637 1599 aaKnown RBP25.39■■□□□ 1.66
LRCH3-202ENST00000414675 LOC105371045A0A1W2PR82 267 aa25.37■■□□□ 1.65
LRCH3-202ENST00000414675 SMARCA2P51531 1590 aa25.37■■□□□ 1.65
LRCH3-202ENST00000414675 CCDC88BA6NC98 1476 aa25.36■■□□□ 1.65
LRCH3-202ENST00000414675 PEG3Q9GZU2 1588 aa25.32■■□□□ 1.64
LRCH3-202ENST00000414675 ATAD2BQ9ULI0 1458 aa25.18■■□□□ 1.62
LRCH3-202ENST00000414675 FAM9AQ8IZU1 332 aaPredicted RBP25.11■■□□□ 1.61
LRCH3-202ENST00000414675 ABCC8Q09428 1581 aa25.08■■□□□ 1.6
LRCH3-202ENST00000414675 BAZ1BQ9UIG0 1483 aaKnown RBP25.06■■□□□ 1.6
LRCH3-202ENST00000414675 EHMT2Q96KQ7 1210 aa24.84■■□□□ 1.57
LRCH3-202ENST00000414675 NCAPD3P42695 1498 aa24.82■■□□□ 1.56
LRCH3-202ENST00000414675 HMGXB3Q12766 1538 aa24.8■■□□□ 1.56
LRCH3-202ENST00000414675 WRNQ14191 1432 aaPredicted RBP eCLIP24.73■■□□□ 1.55
LRCH3-202ENST00000414675 PCGF6Q9BYE7 350 aa24.73■■□□□ 1.55
LRCH3-202ENST00000414675 SOGA1O94964 1423 aa24.71■■□□□ 1.55
LRCH3-202ENST00000414675 SYNJ1O43426 1573 aa24.68■■□□□ 1.54
LRCH3-202ENST00000414675 CC2D2AQ9P2K1 1620 aa24.63■■□□□ 1.53
LRCH3-202ENST00000414675 RUSC2Q8N2Y8 1516 aa24.63■■□□□ 1.53
LRCH3-202ENST00000414675 EEA1Q15075 1411 aa24.54■■□□□ 1.52
LRCH3-202ENST00000414675 CSRNP3Q8WYN3 585 aa24.49■■□□□ 1.51
LRCH3-202ENST00000414675 TRIM26Q12899 539 aaPredicted RBP24.46■■□□□ 1.51
LRCH3-202ENST00000414675 TOP2BQ02880 1626 aa24.45■■□□□ 1.5
LRCH3-202ENST00000414675 CFTRP13569 1480 aa24.45■■□□□ 1.5
LRCH3-202ENST00000414675 BIVM-ERCC5R4GMW8 1640 aa24.41■■□□□ 1.5
LRCH3-202ENST00000414675 HRCP23327 699 aa24.38■■□□□ 1.49
LRCH3-202ENST00000414675 TNIKQ9UKE5 1360 aa24.35■■□□□ 1.49
LRCH3-202ENST00000414675 CUX1P39880 1505 aa24.32■■□□□ 1.48
LRCH3-202ENST00000414675 CEP162Q5TB80 1403 aa24.32■■□□□ 1.48
LRCH3-202ENST00000414675 PRDM2Q13029 1718 aa24.32■■□□□ 1.48
LRCH3-202ENST00000414675 GOLGA3Q08378 1498 aa24.32■■□□□ 1.48
LRCH3-202ENST00000414675 KIF21BO75037 1637 aa24.27■■□□□ 1.48
LRCH3-202ENST00000414675 UBTFP17480 764 aaKnown RBP24.26■■□□□ 1.47
LRCH3-202ENST00000414675 CADPSQ9ULU8 1353 aa24.25■■□□□ 1.47
LRCH3-202ENST00000414675 CEP164Q9UPV0 1460 aa24.25■■□□□ 1.47
LRCH3-202ENST00000414675 PPARGC1BQ86YN6 1023 aaKnown RBP24.2■■□□□ 1.46
LRCH3-202ENST00000414675 RAPGEF2Q9Y4G8 1499 aa24.15■■□□□ 1.46
LRCH3-202ENST00000414675 DNAJC5BQ9UF47 199 aa24.14■■□□□ 1.46
LRCH3-202ENST00000414675 PRXQ9BXM0 1461 aa24.03■■□□□ 1.44
LRCH3-202ENST00000414675 KIF27Q86VH2 1401 aa24.02■■□□□ 1.44
LRCH3-202ENST00000414675 FANCD2Q9BXW9 1451 aa24.02■■□□□ 1.44
LRCH3-202ENST00000414675 NESP48681 1621 aa24.01■■□□□ 1.43
LRCH3-202ENST00000414675 CLIP1P30622 1438 aa23.99■■□□□ 1.43
LRCH3-202ENST00000414675 ERICH3Q5RHP9 1530 aa23.99■■□□□ 1.43
LRCH3-202ENST00000414675 FGD5Q6ZNL6 1462 aa23.96■■□□□ 1.43
LRCH3-202ENST00000414675 CUX2O14529 1486 aa23.91■■□□□ 1.42
LRCH3-202ENST00000414675 TTBK1Q5TCY1 1321 aaPredicted RBP23.91■■□□□ 1.42
LRCH3-202ENST00000414675 LAMC3Q9Y6N6 1575 aa23.86■■□□□ 1.41
LRCH3-202ENST00000414675 RANGAP1P46060 587 aaPredicted RBP23.86■■□□□ 1.41
LRCH3-202ENST00000414675 DNMBPQ6XZF7 1577 aa23.86■■□□□ 1.41
LRCH3-202ENST00000414675 VPS8Q8N3P4 1428 aa23.83■■□□□ 1.41
LRCH3-202ENST00000414675 TOPBP1Q92547 1522 aa23.82■■□□□ 1.4
LRCH3-202ENST00000414675 IGF1RP08069 1367 aa23.82■■□□□ 1.4
LRCH3-202ENST00000414675 POLA1P09884 1462 aaPredicted RBP23.76■■□□□ 1.39
LRCH3-202ENST00000414675 RAD54L2Q9Y4B4 1467 aa23.76■■□□□ 1.39
LRCH3-202ENST00000414675 URB2Q14146 1524 aaKnown RBP23.73■■□□□ 1.39
LRCH3-202ENST00000414675 ARAP1Q96P48 1450 aa23.72■■□□□ 1.39
LRCH3-202ENST00000414675 ABCA10Q8WWZ4 1543 aa23.7■■□□□ 1.38
LRCH3-202ENST00000414675 CARMIL1Q5VZK9 1371 aa23.69■■□□□ 1.38
LRCH3-202ENST00000414675 KIF21AQ7Z4S6 1674 aa23.67■■□□□ 1.38
LRCH3-202ENST00000414675 PDS5BQ9NTI5 1447 aa23.66■■□□□ 1.38
LRCH3-202ENST00000414675 ZEB1P37275 1124 aaPredicted RBP23.64■■□□□ 1.38
LRCH3-202ENST00000414675 ARHGAP35Q9NRY4 1499 aa23.61■■□□□ 1.37
LRCH3-202ENST00000414675 WDR97A6NE52 1622 aa23.6■■□□□ 1.37
LRCH3-202ENST00000414675 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.57■■□□□ 1.36
LRCH3-202ENST00000414675 APLP2Q06481 763 aa23.57■■□□□ 1.36
LRCH3-202ENST00000414675 CUL7Q14999 1698 aa23.49■■□□□ 1.35
LRCH3-202ENST00000414675 ABCA5Q8WWZ7 1642 aa23.49■■□□□ 1.35
LRCH3-202ENST00000414675 TDRD9Q8NDG6 1382 aaKnown RBP23.47■■□□□ 1.35
LRCH3-202ENST00000414675 CCER1Q8TC90 406 aaPredicted RBP23.45■■□□□ 1.34
LRCH3-202ENST00000414675 KANK4Q5T7N3 995 aaPredicted RBP23.43■■□□□ 1.34
LRCH3-202ENST00000414675 TARBP1Q13395 1621 aaKnown RBP23.42■■□□□ 1.34
LRCH3-202ENST00000414675 GAPVD1Q14C86 1478 aa23.41■■□□□ 1.34
LRCH3-202ENST00000414675 CTTNBP2Q8WZ74 1663 aa23.37■■□□□ 1.33
LRCH3-202ENST00000414675 MRC2Q9UBG0 1479 aa23.36■■□□□ 1.33
LRCH3-202ENST00000414675 HNRNPUL2Q1KMD3 747 aaKnown RBP23.36■■□□□ 1.33
LRCH3-202ENST00000414675 P3H3Q8IVL6 736 aa23.3■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms