RNA–Protein interactions for RNA: ENST00000412649.5

CLTCL1-201, Transcript of clathrin heavy chain like 1, humanhuman

TSL 2

Gene CLTCL1, Length 4,635 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLTCL1-201ENST00000412649 NISCHQ9Y2I1 1504 aa24.29■■□□□ 1.48
CLTCL1-201ENST00000412649 SUPT5HO00267 1087 aaKnown RBP22.93■■□□□ 1.26
CLTCL1-201ENST00000412649 SHROOM4Q9ULL8 1493 aa22.65■■□□□ 1.22
CLTCL1-201ENST00000412649 PELP1Q8IZL8 1130 aaKnown RBP22.6■■□□□ 1.21
CLTCL1-201ENST00000412649 PCGF6Q9BYE7 350 aa22.58■■□□□ 1.21
CLTCL1-201ENST00000412649 HRCP23327 699 aa22.54■■□□□ 1.2
CLTCL1-201ENST00000412649 DCAF8L2P0C7V8 631 aa22.31■■□□□ 1.16
CLTCL1-201ENST00000412649 MYT1Q01538 1121 aa22.02■■□□□ 1.11
CLTCL1-201ENST00000412649 PPARGC1BQ86YN6 1023 aaKnown RBP22.01■■□□□ 1.11
CLTCL1-201ENST00000412649 ZEB1P37275 1124 aaPredicted RBP21.98■■□□□ 1.11
CLTCL1-201ENST00000412649 CHIC1Q5VXU3 224 aa21.72■■□□□ 1.07
CLTCL1-201ENST00000412649 TRIM26Q12899 539 aaPredicted RBP21.72■■□□□ 1.07
CLTCL1-201ENST00000412649 CENPBP07199 599 aaPredicted RBP21.68■■□□□ 1.06
CLTCL1-201ENST00000412649 EHMT2Q96KQ7 1210 aa21.53■■□□□ 1.04
CLTCL1-201ENST00000412649 LOC105371045A0A1W2PR82 267 aa21.43■■□□□ 1.02
CLTCL1-201ENST00000412649 FAM9AQ8IZU1 332 aaPredicted RBP21.38■■□□□ 1.01
CLTCL1-201ENST00000412649 CCER1Q8TC90 406 aaPredicted RBP21.35■■□□□ 1.01
CLTCL1-201ENST00000412649 TRIM41Q8WV44 630 aa21.2■□□□□ 0.98
CLTCL1-201ENST00000412649 SCAF1Q9H7N4 1312 aaKnown RBP21.12■□□□□ 0.97
CLTCL1-201ENST00000412649 DCAF1Q9Y4B6 1507 aa21.11■□□□□ 0.97
CLTCL1-201ENST00000412649 YTHDC1Q96MU7 727 aaKnown RBP21.09■□□□□ 0.97
CLTCL1-201ENST00000412649 GTF3C3Q9Y5Q9 886 aa21.05■□□□□ 0.96
CLTCL1-201ENST00000412649 MYO15BQ96JP2 1530 aa21.04■□□□□ 0.96
CLTCL1-201ENST00000412649 ACIN1Q9UKV3 1341 aaKnown RBP21.03■□□□□ 0.96
CLTCL1-201ENST00000412649 TTBK1Q5TCY1 1321 aaPredicted RBP21.01■□□□□ 0.95
CLTCL1-201ENST00000412649 DIEXFQ68CQ4 756 aaKnown RBP20.96■□□□□ 0.95
CLTCL1-201ENST00000412649 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.85■□□□□ 0.93
CLTCL1-201ENST00000412649 NEUROD1Q13562 356 aa20.75■□□□□ 0.91
CLTCL1-201ENST00000412649 APLP2Q06481 763 aa20.69■□□□□ 0.9
CLTCL1-201ENST00000412649 CCDC180Q9P1Z9 1646 aa20.67■□□□□ 0.9
CLTCL1-201ENST00000412649 ERICH6Q7L0X2 663 aa20.54■□□□□ 0.88
CLTCL1-201ENST00000412649 ZCCHC6Q5VYS8 1495 aaKnown RBP20.48■□□□□ 0.87
CLTCL1-201ENST00000412649 ZNF316A6NFI3 1004 aaPredicted RBP20.46■□□□□ 0.87
CLTCL1-201ENST00000412649 UBTFP17480 764 aaKnown RBP20.45■□□□□ 0.86
CLTCL1-201ENST00000412649 NEFLP07196 543 aa20.43■□□□□ 0.86
CLTCL1-201ENST00000412649 HNRNPUL2Q1KMD3 747 aaKnown RBP20.3■□□□□ 0.84
CLTCL1-201ENST00000412649 RANGAP1P46060 587 aaPredicted RBP20.18■□□□□ 0.82
CLTCL1-201ENST00000412649 CLSPNQ9HAW4 1339 aa20.17■□□□□ 0.82
CLTCL1-201ENST00000412649 MIER1Q8N108 512 aa20.06■□□□□ 0.8
CLTCL1-201ENST00000412649 BCANQ96GW7 911 aa20.05■□□□□ 0.8
CLTCL1-201ENST00000412649 ANP32EQ9BTT0 268 aa19.95■□□□□ 0.78
CLTCL1-201ENST00000412649 BCL11AQ9H165 835 aa19.81■□□□□ 0.76
CLTCL1-201ENST00000412649 ITGAEP38570 1179 aa19.79■□□□□ 0.76
CLTCL1-201ENST00000412649 FKBP8Q14318 412 aa19.76■□□□□ 0.75
CLTCL1-201ENST00000412649 SUPT16HQ9Y5B9 1047 aaKnown RBP19.74■□□□□ 0.75
CLTCL1-201ENST00000412649 CDK11AQ9UQ88 783 aaPredicted RBP19.71■□□□□ 0.75
CLTCL1-201ENST00000412649 CSRNP3Q8WYN3 585 aa19.68■□□□□ 0.74
CLTCL1-201ENST00000412649 RSF1Q96T23 1441 aaPredicted RBP19.68■□□□□ 0.74
CLTCL1-201ENST00000412649 RTL5Q5HYW3 569 aaPredicted RBP19.64■□□□□ 0.73
CLTCL1-201ENST00000412649 ANP32CO43423 234 aa19.6■□□□□ 0.73
CLTCL1-201ENST00000412649 ATP1B4Q9UN42 357 aaPredicted RBP19.57■□□□□ 0.72
CLTCL1-201ENST00000412649 CEP162Q5TB80 1403 aa19.57■□□□□ 0.72
CLTCL1-201ENST00000412649 MYT1LQ9UL68 1186 aa19.55■□□□□ 0.72
CLTCL1-201ENST00000412649 TSHZ2Q9NRE2 1034 aa19.54■□□□□ 0.72
CLTCL1-201ENST00000412649 SCRIBQ14160 1630 aa19.53■□□□□ 0.72
CLTCL1-201ENST00000412649 RB1CC1Q8TDY2 1594 aa19.47■□□□□ 0.71
CLTCL1-201ENST00000412649 DDX10Q13206 875 aaKnown RBP19.42■□□□□ 0.7
CLTCL1-201ENST00000412649 TNIKQ9UKE5 1360 aa19.41■□□□□ 0.7
CLTCL1-201ENST00000412649 ABCC9O60706 1549 aa19.41■□□□□ 0.7
CLTCL1-201ENST00000412649 TRIM52Q96A61 297 aa19.39■□□□□ 0.69
CLTCL1-201ENST00000412649 RBM19Q9Y4C8 960 aaKnown RBP19.34■□□□□ 0.69
CLTCL1-201ENST00000412649 FAM50AQ14320 339 aaKnown RBP19.32■□□□□ 0.68
CLTCL1-201ENST00000412649 DAXXQ9UER7 740 aaPredicted RBP19.31■□□□□ 0.68
CLTCL1-201ENST00000412649 EEA1Q15075 1411 aa19.3■□□□□ 0.68
CLTCL1-201ENST00000412649 CLIP1P30622 1438 aa19.29■□□□□ 0.68
CLTCL1-201ENST00000412649 GOLGA3Q08378 1498 aa19.28■□□□□ 0.68
CLTCL1-201ENST00000412649 ANP32AP39687 249 aaKnown RBP19.28■□□□□ 0.68
CLTCL1-201ENST00000412649 HNRNPUQ00839 825 aaKnown RBP eCLIP19.27■□□□□ 0.68
CLTCL1-201ENST00000412649 NBR1Q14596 966 aa19.25■□□□□ 0.67
CLTCL1-201ENST00000412649 WRNQ14191 1432 aaPredicted RBP eCLIP19.24■□□□□ 0.67
CLTCL1-201ENST00000412649 IRX6P78412 446 aaPredicted RBP19.19■□□□□ 0.66
CLTCL1-201ENST00000412649 CNGB1Q14028 1251 aaPredicted RBP19.17■□□□□ 0.66
CLTCL1-201ENST00000412649 POLR3GLQ9BT43 218 aa19.15■□□□□ 0.66
CLTCL1-201ENST00000412649 SOGA1O94964 1423 aa19.09■□□□□ 0.65
CLTCL1-201ENST00000412649 DEKP35659 375 aaKnown RBP19.09■□□□□ 0.65
CLTCL1-201ENST00000412649 HIRIP3Q9BW71 556 aaPredicted RBP19.08■□□□□ 0.64
CLTCL1-201ENST00000412649 ZBTB47Q9UFB7 747 aaPredicted RBP19.08■□□□□ 0.64
CLTCL1-201ENST00000412649 TONSLQ96HA7 1378 aa19.06■□□□□ 0.64
CLTCL1-201ENST00000412649 CEP164Q9UPV0 1460 aa19.05■□□□□ 0.64
CLTCL1-201ENST00000412649 EIF5BO60841 1220 aaKnown RBP19.03■□□□□ 0.64
CLTCL1-201ENST00000412649 NPM2Q86SE8 214 aaKnown RBP19.03■□□□□ 0.64
CLTCL1-201ENST00000412649 CECR2Q9BXF3 1484 aa19.03■□□□□ 0.64
CLTCL1-201ENST00000412649 CCDC88BA6NC98 1476 aa19■□□□□ 0.63
CLTCL1-201ENST00000412649 FAM9BQ8IZU0 186 aa18.98■□□□□ 0.63
CLTCL1-201ENST00000412649 NOP58Q9Y2X3 529 aaKnown RBP18.98■□□□□ 0.63
CLTCL1-201ENST00000412649 VPS8Q8N3P4 1428 aa18.98■□□□□ 0.63
CLTCL1-201ENST00000412649 CCER2I3L3R5 266 aa18.98■□□□□ 0.63
CLTCL1-201ENST00000412649 PPP4R2Q9NY27 417 aa18.98■□□□□ 0.63
CLTCL1-201ENST00000412649 CCDC136Q96JN2 1154 aa18.97■□□□□ 0.63
CLTCL1-201ENST00000412649 KCNH8Q96L42 1107 aa18.96■□□□□ 0.63
CLTCL1-201ENST00000412649 ABCC8Q09428 1581 aa18.95■□□□□ 0.62
CLTCL1-201ENST00000412649 MROH2BQ7Z745 1585 aa18.93■□□□□ 0.62
CLTCL1-201ENST00000412649 DHX57Q6P158 1386 aaKnown RBP18.9■□□□□ 0.62
CLTCL1-201ENST00000412649 FANCIQ9NVI1 1328 aa18.88■□□□□ 0.61
CLTCL1-201ENST00000412649 MRS2Q9HD23 443 aa18.87■□□□□ 0.61
CLTCL1-201ENST00000412649 SIN3AQ96ST3 1273 aa18.86■□□□□ 0.61
CLTCL1-201ENST00000412649 CCNB3Q8WWL7 1395 aa18.84■□□□□ 0.61
CLTCL1-201ENST00000412649 B4GALNT3Q6L9W6 998 aa18.84■□□□□ 0.61
CLTCL1-201ENST00000412649 RTN4Q9NQC3 1192 aaKnown RBP18.83■□□□□ 0.61
CLTCL1-201ENST00000412649 ERICH6BQ5W0A0 696 aa18.82■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 82.3 ms