RNA–Protein interactions for RNA: ENST00000412570.5

SMPD4-203, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 2

Gene SMPD4, Length 3,601 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-203ENST00000412570 NISCHQ9Y2I1 1504 aa21.24■□□□□ 0.99
SMPD4-203ENST00000412570 DCAF8L2P0C7V8 631 aa18.86■□□□□ 0.61
SMPD4-203ENST00000412570 SHROOM4Q9ULL8 1493 aa18.37■□□□□ 0.53
SMPD4-203ENST00000412570 ABCC9O60706 1549 aa18.17■□□□□ 0.5
SMPD4-203ENST00000412570 CCDC180Q9P1Z9 1646 aa18.09■□□□□ 0.49
SMPD4-203ENST00000412570 ZCCHC6Q5VYS8 1495 aaKnown RBP17.73■□□□□ 0.43
SMPD4-203ENST00000412570 SUPT5HO00267 1087 aaKnown RBP17.68■□□□□ 0.42
SMPD4-203ENST00000412570 PABPN1Q86U42 306 aaKnown RBP eCLIP17.45■□□□□ 0.382e-6■■□□□ 12.8
SMPD4-203ENST00000412570 SCRIBQ14160 1630 aa17.39■□□□□ 0.37
SMPD4-203ENST00000412570 RB1CC1Q8TDY2 1594 aa17.07■□□□□ 0.32
SMPD4-203ENST00000412570 DCAF1Q9Y4B6 1507 aa17.07■□□□□ 0.32
SMPD4-203ENST00000412570 NACADO15069 1562 aa17.07■□□□□ 0.32
SMPD4-203ENST00000412570 CECR2Q9BXF3 1484 aa16.88■□□□□ 0.29
SMPD4-203ENST00000412570 MYO15BQ96JP2 1530 aa16.79■□□□□ 0.28
SMPD4-203ENST00000412570 EHMT2Q96KQ7 1210 aa16.7■□□□□ 0.26
SMPD4-203ENST00000412570 UNC13AQ9UPW8 1703 aa16.67■□□□□ 0.26
SMPD4-203ENST00000412570 RSF1Q96T23 1441 aaPredicted RBP16.65■□□□□ 0.26
SMPD4-203ENST00000412570 MROH2BQ7Z745 1585 aa16.62■□□□□ 0.25
SMPD4-203ENST00000412570 BICRAQ9NZM4 1560 aa16.58■□□□□ 0.24
SMPD4-203ENST00000412570 FAM9AQ8IZU1 332 aaPredicted RBP16.51■□□□□ 0.23
SMPD4-203ENST00000412570 WIZO95785 1651 aa16.49■□□□□ 0.23
SMPD4-203ENST00000412570 CHIC1Q5VXU3 224 aa16.42■□□□□ 0.22
SMPD4-203ENST00000412570 BAZ1AQ9NRL2 1556 aaPredicted RBP16.35■□□□□ 0.21
SMPD4-203ENST00000412570 DNAJC5BQ9UF47 199 aa16.34■□□□□ 0.21
SMPD4-203ENST00000412570 TRIM41Q8WV44 630 aa16.31■□□□□ 0.2
SMPD4-203ENST00000412570 SMARCA4P51532 1647 aa16.31■□□□□ 0.2
SMPD4-203ENST00000412570 LOC105371045A0A1W2PR82 267 aa16.21■□□□□ 0.19
SMPD4-203ENST00000412570 EIF4G1Q04637 1599 aaKnown RBP16.19■□□□□ 0.18
SMPD4-203ENST00000412570 BAZ1BQ9UIG0 1483 aaKnown RBP16.19■□□□□ 0.18
SMPD4-203ENST00000412570 ATAD2BQ9ULI0 1458 aa16.18■□□□□ 0.18
SMPD4-203ENST00000412570 CCDC88BA6NC98 1476 aa16.15■□□□□ 0.18
SMPD4-203ENST00000412570 RANGAP1P46060 587 aaPredicted RBP16.08■□□□□ 0.16
SMPD4-203ENST00000412570 CC2D2AQ9P2K1 1620 aa16.04■□□□□ 0.16
SMPD4-203ENST00000412570 TOP2AP11388 1531 aaKnown RBP16.04■□□□□ 0.16
SMPD4-203ENST00000412570 ABCC8Q09428 1581 aa16.01■□□□□ 0.15
SMPD4-203ENST00000412570 SMARCA2P51531 1590 aa15.98■□□□□ 0.15
SMPD4-203ENST00000412570 TTBK1Q5TCY1 1321 aaPredicted RBP15.88■□□□□ 0.13
SMPD4-203ENST00000412570 NCAPD3P42695 1498 aa15.88■□□□□ 0.13
SMPD4-203ENST00000412570 NESP48681 1621 aa15.87■□□□□ 0.13
SMPD4-203ENST00000412570 PPARGC1BQ86YN6 1023 aaKnown RBP15.85■□□□□ 0.13
SMPD4-203ENST00000412570 UBTFP17480 764 aaKnown RBP15.78■□□□□ 0.12
SMPD4-203ENST00000412570 PEG3Q9GZU2 1588 aa15.76■□□□□ 0.11
SMPD4-203ENST00000412570 SOGA1O94964 1423 aa15.74■□□□□ 0.11
SMPD4-203ENST00000412570 WRNQ14191 1432 aaPredicted RBP eCLIP15.74■□□□□ 0.115e-6■■■■■ 34.5
SMPD4-203ENST00000412570 RUSC2Q8N2Y8 1516 aa15.71■□□□□ 0.11
SMPD4-203ENST00000412570 CADPSQ9ULU8 1353 aa15.7■□□□□ 0.1
SMPD4-203ENST00000412570 HMGXB3Q12766 1538 aa15.69■□□□□ 0.1
SMPD4-203ENST00000412570 CSRNP3Q8WYN3 585 aa15.6■□□□□ 0.09
SMPD4-203ENST00000412570 SYNJ1O43426 1573 aa15.59■□□□□ 0.09
SMPD4-203ENST00000412570 CFTRP13569 1480 aa15.58■□□□□ 0.08
SMPD4-203ENST00000412570 FANCD2Q9BXW9 1451 aa15.58■□□□□ 0.08
SMPD4-203ENST00000412570 ERCC6Q03468 1493 aa15.53■□□□□ 0.08
SMPD4-203ENST00000412570 FBLN2P98095 1184 aa15.53■□□□□ 0.08
SMPD4-203ENST00000412570 P3H3Q8IVL6 736 aa15.5■□□□□ 0.07
SMPD4-203ENST00000412570 RAD54L2Q9Y4B4 1467 aa15.5■□□□□ 0.07
SMPD4-203ENST00000412570 TDRD9Q8NDG6 1382 aaKnown RBP15.5■□□□□ 0.07
SMPD4-203ENST00000412570 ATP1B4Q9UN42 357 aaPredicted RBP15.49■□□□□ 0.07
SMPD4-203ENST00000412570 CUX1P39880 1505 aa15.48■□□□□ 0.07
SMPD4-203ENST00000412570 PCGF6Q9BYE7 350 aa15.47■□□□□ 0.07
SMPD4-203ENST00000412570 CEP164Q9UPV0 1460 aa15.44■□□□□ 0.06
SMPD4-203ENST00000412570 CUX2O14529 1486 aa15.44■□□□□ 0.06
SMPD4-203ENST00000412570 PDS5BQ9NTI5 1447 aa15.43■□□□□ 0.06
SMPD4-203ENST00000412570 FGD5Q6ZNL6 1462 aa15.41■□□□□ 0.06
SMPD4-203ENST00000412570 ARID3CA6NKF2 412 aa15.37■□□□□ 0.05
SMPD4-203ENST00000412570 URB2Q14146 1524 aaKnown RBP15.34■□□□□ 0.05
SMPD4-203ENST00000412570 TOPBP1Q92547 1522 aa15.32■□□□□ 0.04
SMPD4-203ENST00000412570 RAPGEF2Q9Y4G8 1499 aa15.32■□□□□ 0.04
SMPD4-203ENST00000412570 KIF21AQ7Z4S6 1674 aa15.32■□□□□ 0.04
SMPD4-203ENST00000412570 KIF27Q86VH2 1401 aa15.31■□□□□ 0.04
SMPD4-203ENST00000412570 AQRO60306 1485 aaKnown RBP eCLIP15.31■□□□□ 0.047e-7■■■■□ 21.1
SMPD4-203ENST00000412570 TOP2BQ02880 1626 aa15.3■□□□□ 0.04
SMPD4-203ENST00000412570 POLA1P09884 1462 aaPredicted RBP15.3■□□□□ 0.04
SMPD4-203ENST00000412570 LAMC3Q9Y6N6 1575 aa15.28■□□□□ 0.04
SMPD4-203ENST00000412570 CEP162Q5TB80 1403 aa15.23■□□□□ 0.03
SMPD4-203ENST00000412570 CARMIL1Q5VZK9 1371 aa15.22■□□□□ 0.03
SMPD4-203ENST00000412570 IGF1RP08069 1367 aa15.22■□□□□ 0.03
SMPD4-203ENST00000412570 APLP2Q06481 763 aa15.21■□□□□ 0.02
SMPD4-203ENST00000412570 ZNF608Q9ULD9 1512 aaPredicted RBP15.2■□□□□ 0.02
SMPD4-203ENST00000412570 GOLGA3Q08378 1498 aa15.19■□□□□ 0.02
SMPD4-203ENST00000412570 CHMP7Q8WUX9 453 aaPredicted RBP15.18■□□□□ 0.02
SMPD4-203ENST00000412570 MRC2Q9UBG0 1479 aa15.17■□□□□ 0.02
SMPD4-203ENST00000412570 DNMBPQ6XZF7 1577 aa15.17■□□□□ 0.02
SMPD4-203ENST00000412570 BIVM-ERCC5R4GMW8 1640 aa15.15■□□□□ 0.02
SMPD4-203ENST00000412570 CLIP1P30622 1438 aa15.14■□□□□ 0.01
SMPD4-203ENST00000412570 EEA1Q15075 1411 aa15.14■□□□□ 0.01
SMPD4-203ENST00000412570 ITGAEP38570 1179 aa15.12■□□□□ 0.01
SMPD4-203ENST00000412570 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.11■□□□□ 0.01
SMPD4-203ENST00000412570 HNRNPUL2Q1KMD3 747 aaKnown RBP15.11■□□□□ 0.01
SMPD4-203ENST00000412570 GAPVD1Q14C86 1478 aa15.11■□□□□ 0.01
SMPD4-203ENST00000412570 TNIKQ9UKE5 1360 aa15.11■□□□□ 0.01
SMPD4-203ENST00000412570 PRDM2Q13029 1718 aa15.08■□□□□ 0
SMPD4-203ENST00000412570 ABCA10Q8WWZ4 1543 aa15.02□□□□□ -0.01
SMPD4-203ENST00000412570 PRXQ9BXM0 1461 aa15.02□□□□□ -0.01
SMPD4-203ENST00000412570 TRIM26Q12899 539 aaPredicted RBP15□□□□□ -0.01
SMPD4-203ENST00000412570 FHOD3Q2V2M9 1422 aa14.99□□□□□ -0.01
SMPD4-203ENST00000412570 KANK4Q5T7N3 995 aaPredicted RBP14.98□□□□□ -0.01
SMPD4-203ENST00000412570 SNAPC4Q5SXM2 1469 aa14.97□□□□□ -0.01
SMPD4-203ENST00000412570 IFT140Q96RY7 1462 aa14.93□□□□□ -0.02
SMPD4-203ENST00000412570 KIF21BO75037 1637 aa14.92□□□□□ -0.02
SMPD4-203ENST00000412570 WDR62O43379 1518 aa14.91□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms