RNA–Protein interactions for RNA: ENST00000409364.3

GTF3C3-202, Transcript of general transcription factor IIIC subunit 3, humanhuman

TSL 1 (best) BASIC

Gene GTF3C3, Length 1,736 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF3C3-202ENST00000409364 AEBP2Q6ZN18 517 aaPredicted RBP18.49■□□□□ 0.55
GTF3C3-202ENST00000409364 CHIC1Q5VXU3 224 aa17.52■□□□□ 0.4
GTF3C3-202ENST00000409364 SENP3Q9H4L4 574 aaPredicted RBP16.19■□□□□ 0.18
GTF3C3-202ENST00000409364 POTEDQ86YR6 584 aa16.17■□□□□ 0.18
GTF3C3-202ENST00000409364 PHF23Q9BUL5 403 aaPredicted RBP15.71■□□□□ 0.11
GTF3C3-202ENST00000409364 FOXD1Q16676 465 aa15.07■□□□□ 0
GTF3C3-202ENST00000409364 MSH5O43196 834 aa14.75□□□□□ -0.05
GTF3C3-202ENST00000409364 PIAS4Q8N2W9 510 aaPredicted RBP13.87□□□□□ -0.19
GTF3C3-202ENST00000409364 NISCHQ9Y2I1 1504 aa13.72□□□□□ -0.21
GTF3C3-202ENST00000409364 CACNB1Q02641 598 aaPredicted RBP13.29□□□□□ -0.28
GTF3C3-202ENST00000409364 PPP6R1Q9UPN7 881 aa13.12□□□□□ -0.31
GTF3C3-202ENST00000409364 ADRA2BP18089 450 aa13.05□□□□□ -0.32
GTF3C3-202ENST00000409364 PLPPR3Q6T4P5 718 aa12.82□□□□□ -0.36
GTF3C3-202ENST00000409364 DMRT2Q9Y5R5 561 aa12.61□□□□□ -0.39
GTF3C3-202ENST00000409364 POTEHQ6S545 545 aa12.49□□□□□ -0.41
GTF3C3-202ENST00000409364 RNF39Q9H2S5 420 aa12.36□□□□□ -0.43
GTF3C3-202ENST00000409364 MAPK8IP2Q13387 824 aaPredicted RBP12.29□□□□□ -0.44
GTF3C3-202ENST00000409364 SCAF1Q9H7N4 1312 aaKnown RBP12.23□□□□□ -0.45
GTF3C3-202ENST00000409364 C1QBPQ07021 282 aaKnown RBP12.22□□□□□ -0.45
GTF3C3-202ENST00000409364 DCAF8L1A6NGE4 600 aa12.13□□□□□ -0.47
GTF3C3-202ENST00000409364 CCDC180Q9P1Z9 1646 aa11.81□□□□□ -0.52
GTF3C3-202ENST00000409364 HOXD11P31277 338 aaPredicted RBP11.7□□□□□ -0.54
GTF3C3-202ENST00000409364 DNAJC5BQ9UF47 199 aa11.67□□□□□ -0.54
GTF3C3-202ENST00000409364 ZCCHC6Q5VYS8 1495 aaKnown RBP11.52□□□□□ -0.57
GTF3C3-202ENST00000409364 DCAF8L2P0C7V8 631 aa11.42□□□□□ -0.58
GTF3C3-202ENST00000409364 DCAF1Q9Y4B6 1507 aa11.35□□□□□ -0.59
GTF3C3-202ENST00000409364 RNF216Q9NWF9 866 aaPredicted RBP11.34□□□□□ -0.59
GTF3C3-202ENST00000409364 SHROOM4Q9ULL8 1493 aa11.3□□□□□ -0.6
GTF3C3-202ENST00000409364 ABCC9O60706 1549 aa11.26□□□□□ -0.61
GTF3C3-202ENST00000409364 SP7Q8TDD2 431 aaPredicted RBP11.2□□□□□ -0.62
GTF3C3-202ENST00000409364 MYO15BQ96JP2 1530 aa11.19□□□□□ -0.62
GTF3C3-202ENST00000409364 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.18□□□□□ -0.621e-7■■■■□ 21.9
GTF3C3-202ENST00000409364 DSG3P32926 999 aa11.17□□□□□ -0.62
GTF3C3-202ENST00000409364 CNKSR2Q8WXI2 1034 aa11.15□□□□□ -0.62
GTF3C3-202ENST00000409364 NACADO15069 1562 aa11.06□□□□□ -0.64
GTF3C3-202ENST00000409364 SUPT5HO00267 1087 aaKnown RBP11.01□□□□□ -0.65
GTF3C3-202ENST00000409364 PPP4R3CPQ6ZMV5 832 aa11.01□□□□□ -0.65
GTF3C3-202ENST00000409364 CAPN15O75808 1086 aa11.01□□□□□ -0.65
GTF3C3-202ENST00000409364 CHRDL2Q6WN34 429 aa10.95□□□□□ -0.66
GTF3C3-202ENST00000409364 RB1CC1Q8TDY2 1594 aa10.91□□□□□ -0.66
GTF3C3-202ENST00000409364 SCRIBQ14160 1630 aa10.89□□□□□ -0.67
GTF3C3-202ENST00000409364 RBM42Q9BTD8 480 aaKnown RBP10.87□□□□□ -0.67
GTF3C3-202ENST00000409364 SPINK5Q9NQ38 1064 aaPredicted RBP10.84□□□□□ -0.67
GTF3C3-202ENST00000409364 PLSCR2Q9NRY7 297 aa10.77□□□□□ -0.69
GTF3C3-202ENST00000409364 RSF1Q96T23 1441 aaPredicted RBP10.73□□□□□ -0.69
GTF3C3-202ENST00000409364 U3KPZ7 1027 aaPredicted RBP10.71□□□□□ -0.69
GTF3C3-202ENST00000409364 UNC13AQ9UPW8 1703 aa10.66□□□□□ -0.7
GTF3C3-202ENST00000409364 CECR2Q9BXF3 1484 aa10.65□□□□□ -0.7
GTF3C3-202ENST00000409364 APLP2Q06481 763 aa10.61□□□□□ -0.71
GTF3C3-202ENST00000409364 PABPN1Q86U42 306 aaKnown RBP eCLIP10.61□□□□□ -0.71
GTF3C3-202ENST00000409364 BICRAQ9NZM4 1560 aa10.6□□□□□ -0.71
GTF3C3-202ENST00000409364 MROH2BQ7Z745 1585 aa10.58□□□□□ -0.72
GTF3C3-202ENST00000409364 ZNF219Q9P2Y4 722 aaPredicted RBP10.58□□□□□ -0.72
GTF3C3-202ENST00000409364 HAX1O00165 279 aa10.58□□□□□ -0.72
GTF3C3-202ENST00000409364 BAZ1AQ9NRL2 1556 aaPredicted RBP10.57□□□□□ -0.72
GTF3C3-202ENST00000409364 ABCB7O75027 752 aa10.55□□□□□ -0.72
GTF3C3-202ENST00000409364 TRHP20396 242 aaPredicted RBP10.52□□□□□ -0.73
GTF3C3-202ENST00000409364 LHX8Q68G74 356 aa10.48□□□□□ -0.73
GTF3C3-202ENST00000409364 SMARCA4P51532 1647 aa10.46□□□□□ -0.73
GTF3C3-202ENST00000409364 WIZO95785 1651 aa10.45□□□□□ -0.74
GTF3C3-202ENST00000409364 NCBP3Q53F19 620 aaKnown RBP10.41□□□□□ -0.74
GTF3C3-202ENST00000409364 PIP4P2Q8N4L2 257 aa10.4□□□□□ -0.74
GTF3C3-202ENST00000409364 TOP2AP11388 1531 aaKnown RBP10.39□□□□□ -0.75
GTF3C3-202ENST00000409364 TRIM41Q8WV44 630 aa10.37□□□□□ -0.75
GTF3C3-202ENST00000409364 PEG3Q9GZU2 1588 aa10.36□□□□□ -0.75
GTF3C3-202ENST00000409364 ATAD2BQ9ULI0 1458 aa10.34□□□□□ -0.75
GTF3C3-202ENST00000409364 CCDC88BA6NC98 1476 aa10.33□□□□□ -0.76
GTF3C3-202ENST00000409364 SMARCA2P51531 1590 aa10.32□□□□□ -0.76
GTF3C3-202ENST00000409364 AKT1S1Q96B36 256 aa10.31□□□□□ -0.76
GTF3C3-202ENST00000409364 BAZ1BQ9UIG0 1483 aaKnown RBP10.27□□□□□ -0.76
GTF3C3-202ENST00000409364 EIF4G1Q04637 1599 aaKnown RBP10.26□□□□□ -0.77
GTF3C3-202ENST00000409364 NCAPD3P42695 1498 aa10.25□□□□□ -0.77
GTF3C3-202ENST00000409364 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.25□□□□□ -0.77
GTF3C3-202ENST00000409364 HNRNPUL2Q1KMD3 747 aaKnown RBP10.25□□□□□ -0.77
GTF3C3-202ENST00000409364 LOC105371045A0A1W2PR82 267 aa10.21□□□□□ -0.78
GTF3C3-202ENST00000409364 FXR2P51116 673 aaKnown RBP eCLIP10.19□□□□□ -0.78
GTF3C3-202ENST00000409364 HMGXB3Q12766 1538 aa10.18□□□□□ -0.78
GTF3C3-202ENST00000409364 EVX2Q03828 476 aa10.17□□□□□ -0.78
GTF3C3-202ENST00000409364 CC2D2AQ9P2K1 1620 aa10.17□□□□□ -0.78
GTF3C3-202ENST00000409364 FAM9AQ8IZU1 332 aaPredicted RBP10.15□□□□□ -0.78
GTF3C3-202ENST00000409364 REM2Q8IYK8 340 aaPredicted RBP10.13□□□□□ -0.79
GTF3C3-202ENST00000409364 WRNQ14191 1432 aaPredicted RBP eCLIP10.09□□□□□ -0.79
GTF3C3-202ENST00000409364 ABCC8Q09428 1581 aa10.08□□□□□ -0.8
GTF3C3-202ENST00000409364 SAMD1Q6SPF0 538 aaPredicted RBP10.07□□□□□ -0.8
GTF3C3-202ENST00000409364 NPM3O75607 178 aaKnown RBP10.05□□□□□ -0.8
GTF3C3-202ENST00000409364 EEA1Q15075 1411 aa10.05□□□□□ -0.8
GTF3C3-202ENST00000409364 CFTRP13569 1480 aa10.04□□□□□ -0.8
GTF3C3-202ENST00000409364 CSRNP3Q8WYN3 585 aa10.03□□□□□ -0.8
GTF3C3-202ENST00000409364 GABBR2O75899 941 aa10.02□□□□□ -0.8
GTF3C3-202ENST00000409364 CADPSQ9ULU8 1353 aa10.02□□□□□ -0.81
GTF3C3-202ENST00000409364 PCDH10Q9P2E7 1040 aa10.02□□□□□ -0.81
GTF3C3-202ENST00000409364 PITPNM1O00562 1244 aa10□□□□□ -0.81
GTF3C3-202ENST00000409364 SOGA1O94964 1423 aa10□□□□□ -0.81
GTF3C3-202ENST00000409364 EHMT2Q96KQ7 1210 aa9.98□□□□□ -0.81
GTF3C3-202ENST00000409364 POLA2Q14181 598 aa9.97□□□□□ -0.81
GTF3C3-202ENST00000409364 SYNJ1O43426 1573 aa9.95□□□□□ -0.82
GTF3C3-202ENST00000409364 TOP2BQ02880 1626 aa9.93□□□□□ -0.82
GTF3C3-202ENST00000409364 RUSC2Q8N2Y8 1516 aa9.92□□□□□ -0.82
GTF3C3-202ENST00000409364 TNIKQ9UKE5 1360 aa9.92□□□□□ -0.82
GTF3C3-202ENST00000409364 POTEMA6NI47 508 aa9.91□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 209.9 ms