RNA–Protein interactions for RNA: ENST00000394817.6

SIL1-202, Transcript of SIL1 nucleotide exchange factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SIL1, Length 1,923 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SIL1-202ENST00000394817 NISCHQ9Y2I1 1504 aa40.47■■■■■ 4.07
SIL1-202ENST00000394817 CCDC180Q9P1Z9 1646 aa35.17■■■■□ 3.22
SIL1-202ENST00000394817 ZCCHC6Q5VYS8 1495 aaKnown RBP34.05■■■■□ 3.04
SIL1-202ENST00000394817 SHROOM4Q9ULL8 1493 aa33.49■■■□□ 2.95
SIL1-202ENST00000394817 DCAF8L2P0C7V8 631 aa33.46■■■□□ 2.95
SIL1-202ENST00000394817 DCAF1Q9Y4B6 1507 aa33.36■■■□□ 2.93
SIL1-202ENST00000394817 ABCC9O60706 1549 aa33.23■■■□□ 2.91
SIL1-202ENST00000394817 MYO15BQ96JP2 1530 aa32.87■■■□□ 2.85
SIL1-202ENST00000394817 NACADO15069 1562 aa32.69■■■□□ 2.82
SIL1-202ENST00000394817 SUPT5HO00267 1087 aaKnown RBP32.57■■■□□ 2.81
SIL1-202ENST00000394817 SCRIBQ14160 1630 aa32.52■■■□□ 2.8
SIL1-202ENST00000394817 RB1CC1Q8TDY2 1594 aa32.4■■■□□ 2.78
SIL1-202ENST00000394817 UNC13AQ9UPW8 1703 aa31.91■■■□□ 2.7
SIL1-202ENST00000394817 CHIC1Q5VXU3 224 aa31.61■■■□□ 2.65
SIL1-202ENST00000394817 RSF1Q96T23 1441 aaPredicted RBP31.58■■■□□ 2.65
SIL1-202ENST00000394817 CECR2Q9BXF3 1484 aa31.53■■■□□ 2.64
SIL1-202ENST00000394817 BICRAQ9NZM4 1560 aa31.51■■■□□ 2.63
SIL1-202ENST00000394817 PABPN1Q86U42 306 aaKnown RBP eCLIP31.39■■■□□ 2.62
SIL1-202ENST00000394817 MROH2BQ7Z745 1585 aa31.35■■■□□ 2.61
SIL1-202ENST00000394817 BAZ1AQ9NRL2 1556 aaPredicted RBP31.21■■■□□ 2.59
SIL1-202ENST00000394817 WIZO95785 1651 aa31.14■■■□□ 2.58
SIL1-202ENST00000394817 SMARCA4P51532 1647 aa31.11■■■□□ 2.57
SIL1-202ENST00000394817 TOP2AP11388 1531 aaKnown RBP30.72■■■□□ 2.51
SIL1-202ENST00000394817 PEG3Q9GZU2 1588 aa30.65■■■□□ 2.5
SIL1-202ENST00000394817 EIF4G1Q04637 1599 aaKnown RBP30.59■■■□□ 2.49
SIL1-202ENST00000394817 TRIM41Q8WV44 630 aa30.53■■■□□ 2.48
SIL1-202ENST00000394817 ATAD2BQ9ULI0 1458 aa30.52■■■□□ 2.48
SIL1-202ENST00000394817 SMARCA2P51531 1590 aa30.49■■■□□ 2.47
SIL1-202ENST00000394817 LOC105371045A0A1W2PR82 267 aa30.45■■■□□ 2.46
SIL1-202ENST00000394817 CCDC88BA6NC98 1476 aa30.45■■■□□ 2.46
SIL1-202ENST00000394817 BAZ1BQ9UIG0 1483 aaKnown RBP30.37■■■□□ 2.45
SIL1-202ENST00000394817 NCAPD3P42695 1498 aa30.17■■■□□ 2.42
SIL1-202ENST00000394817 HMGXB3Q12766 1538 aa30.16■■■□□ 2.42
SIL1-202ENST00000394817 ABCC8Q09428 1581 aa30.06■■■□□ 2.4
SIL1-202ENST00000394817 CC2D2AQ9P2K1 1620 aa30.05■■■□□ 2.4
SIL1-202ENST00000394817 FAM9AQ8IZU1 332 aaPredicted RBP30.04■■■□□ 2.4
SIL1-202ENST00000394817 PCGF6Q9BYE7 350 aa29.92■■■□□ 2.38
SIL1-202ENST00000394817 HRCP23327 699 aa29.73■■■□□ 2.35
SIL1-202ENST00000394817 WRNQ14191 1432 aaPredicted RBP eCLIP29.69■■■□□ 2.34
SIL1-202ENST00000394817 TRIM26Q12899 539 aaPredicted RBP29.68■■■□□ 2.34
SIL1-202ENST00000394817 EEA1Q15075 1411 aa29.67■■■□□ 2.34
SIL1-202ENST00000394817 SYNJ1O43426 1573 aa29.61■■■□□ 2.33
SIL1-202ENST00000394817 SOGA1O94964 1423 aa29.61■■■□□ 2.33
SIL1-202ENST00000394817 EHMT2Q96KQ7 1210 aa29.61■■■□□ 2.33
SIL1-202ENST00000394817 CFTRP13569 1480 aa29.58■■■□□ 2.33
SIL1-202ENST00000394817 PRDM2Q13029 1718 aa29.5■■■□□ 2.31
SIL1-202ENST00000394817 RUSC2Q8N2Y8 1516 aa29.48■■■□□ 2.31
SIL1-202ENST00000394817 CADPSQ9ULU8 1353 aa29.44■■■□□ 2.3
SIL1-202ENST00000394817 TOP2BQ02880 1626 aa29.4■■■□□ 2.3
SIL1-202ENST00000394817 CSRNP3Q8WYN3 585 aa29.4■■■□□ 2.3
SIL1-202ENST00000394817 BIVM-ERCC5R4GMW8 1640 aa29.38■■■□□ 2.29
SIL1-202ENST00000394817 TNIKQ9UKE5 1360 aa29.37■■■□□ 2.29
SIL1-202ENST00000394817 DNAJC5BQ9UF47 199 aa29.35■■■□□ 2.29
SIL1-202ENST00000394817 GOLGA3Q08378 1498 aa29.33■■■□□ 2.29
SIL1-202ENST00000394817 CEP162Q5TB80 1403 aa29.32■■■□□ 2.28
SIL1-202ENST00000394817 KIF21BO75037 1637 aa29.32■■■□□ 2.28
SIL1-202ENST00000394817 CUX1P39880 1505 aa29.29■■■□□ 2.28
SIL1-202ENST00000394817 NESP48681 1621 aa29.26■■■□□ 2.28
SIL1-202ENST00000394817 CEP164Q9UPV0 1460 aa29.24■■■□□ 2.27
SIL1-202ENST00000394817 FANCD2Q9BXW9 1451 aa29.16■■■□□ 2.26
SIL1-202ENST00000394817 LAMC3Q9Y6N6 1575 aa29.14■■■□□ 2.25
SIL1-202ENST00000394817 UBTFP17480 764 aaKnown RBP29.1■■■□□ 2.25
SIL1-202ENST00000394817 RAPGEF2Q9Y4G8 1499 aa28.99■■■□□ 2.23
SIL1-202ENST00000394817 PPARGC1BQ86YN6 1023 aaKnown RBP28.96■■■□□ 2.23
SIL1-202ENST00000394817 ERICH3Q5RHP9 1530 aa28.95■■■□□ 2.23
SIL1-202ENST00000394817 FGD5Q6ZNL6 1462 aa28.93■■■□□ 2.22
SIL1-202ENST00000394817 DNMBPQ6XZF7 1577 aa28.92■■■□□ 2.22
SIL1-202ENST00000394817 KIF21AQ7Z4S6 1674 aa28.91■■■□□ 2.22
SIL1-202ENST00000394817 PRXQ9BXM0 1461 aa28.89■■■□□ 2.22
SIL1-202ENST00000394817 CLIP1P30622 1438 aa28.88■■■□□ 2.21
SIL1-202ENST00000394817 PDS5BQ9NTI5 1447 aa28.88■■■□□ 2.21
SIL1-202ENST00000394817 ZEB1P37275 1124 aaPredicted RBP28.88■■■□□ 2.21
SIL1-202ENST00000394817 TOPBP1Q92547 1522 aa28.87■■■□□ 2.21
SIL1-202ENST00000394817 KIF27Q86VH2 1401 aa28.84■■■□□ 2.21
SIL1-202ENST00000394817 URB2Q14146 1524 aaKnown RBP28.82■■■□□ 2.2
SIL1-202ENST00000394817 CUX2O14529 1486 aa28.76■■■□□ 2.2
SIL1-202ENST00000394817 VPS8Q8N3P4 1428 aa28.76■■■□□ 2.19
SIL1-202ENST00000394817 POLA1P09884 1462 aaPredicted RBP28.75■■■□□ 2.19
SIL1-202ENST00000394817 RAD54L2Q9Y4B4 1467 aa28.71■■■□□ 2.19
SIL1-202ENST00000394817 ABCA10Q8WWZ4 1543 aa28.62■■■□□ 2.17
SIL1-202ENST00000394817 WDR97A6NE52 1622 aa28.58■■■□□ 2.17
SIL1-202ENST00000394817 TTBK1Q5TCY1 1321 aaPredicted RBP28.58■■■□□ 2.17
SIL1-202ENST00000394817 IGF1RP08069 1367 aa28.57■■■□□ 2.16
SIL1-202ENST00000394817 MRC2Q9UBG0 1479 aa28.55■■■□□ 2.16
SIL1-202ENST00000394817 ARAP1Q96P48 1450 aa28.54■■■□□ 2.16
SIL1-202ENST00000394817 TARBP1Q13395 1621 aaKnown RBP28.44■■■□□ 2.14
SIL1-202ENST00000394817 CARMIL1Q5VZK9 1371 aa28.42■■■□□ 2.14
SIL1-202ENST00000394817 ABCA5Q8WWZ7 1642 aa28.42■■■□□ 2.14
SIL1-202ENST00000394817 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP28.42■■■□□ 2.14
SIL1-202ENST00000394817 RANGAP1P46060 587 aaPredicted RBP28.42■■■□□ 2.14
SIL1-202ENST00000394817 ERCC6Q03468 1493 aa28.41■■■□□ 2.14
SIL1-202ENST00000394817 WDR62O43379 1518 aa28.4■■■□□ 2.14
SIL1-202ENST00000394817 APLP2Q06481 763 aa28.4■■■□□ 2.14
SIL1-202ENST00000394817 TDRD9Q8NDG6 1382 aaKnown RBP28.39■■■□□ 2.14
SIL1-202ENST00000394817 CCER1Q8TC90 406 aaPredicted RBP28.37■■■□□ 2.13
SIL1-202ENST00000394817 ARHGAP35Q9NRY4 1499 aa28.37■■■□□ 2.13
SIL1-202ENST00000394817 CUL7Q14999 1698 aa28.33■■■□□ 2.13
SIL1-202ENST00000394817 THOC2Q8NI27 1593 aaKnown RBP28.33■■■□□ 2.13
SIL1-202ENST00000394817 GAPVD1Q14C86 1478 aa28.32■■■□□ 2.12
SIL1-202ENST00000394817 PBRM1Q86U86 1689 aa28.22■■■□□ 2.11
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms