RNA–Protein interactions for RNA: ENST00000393585.6

CASP3-202, Transcript of caspase 3, humanhuman

TSL 1 (best) BASIC

Gene CASP3, Length 2,624 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CASP3-202ENST00000393585 NISCHQ9Y2I1 1504 aa24.13■■□□□ 1.45
CASP3-202ENST00000393585 CCDC180Q9P1Z9 1646 aa20.81■□□□□ 0.92
CASP3-202ENST00000393585 AEBP2Q6ZN18 517 aaPredicted RBP20.77■□□□□ 0.92
CASP3-202ENST00000393585 ZCCHC6Q5VYS8 1495 aaKnown RBP20.33■□□□□ 0.84
CASP3-202ENST00000393585 SHROOM4Q9ULL8 1493 aa20.13■□□□□ 0.81
CASP3-202ENST00000393585 CHIC1Q5VXU3 224 aa20.1■□□□□ 0.81
CASP3-202ENST00000393585 DCAF8L2P0C7V8 631 aa20.07■□□□□ 0.8
CASP3-202ENST00000393585 DCAF1Q9Y4B6 1507 aa19.84■□□□□ 0.77
CASP3-202ENST00000393585 ABCC9O60706 1549 aa19.65■□□□□ 0.74
CASP3-202ENST00000393585 SUPT5HO00267 1087 aaKnown RBP19.49■□□□□ 0.71
CASP3-202ENST00000393585 MYO15BQ96JP2 1530 aa19.47■□□□□ 0.71
CASP3-202ENST00000393585 SCRIBQ14160 1630 aa19.36■□□□□ 0.69
CASP3-202ENST00000393585 NACADO15069 1562 aa19.34■□□□□ 0.69
CASP3-202ENST00000393585 RB1CC1Q8TDY2 1594 aa19.14■□□□□ 0.65
CASP3-202ENST00000393585 RSF1Q96T23 1441 aaPredicted RBP18.87■□□□□ 0.61
CASP3-202ENST00000393585 CECR2Q9BXF3 1484 aa18.83■□□□□ 0.61
CASP3-202ENST00000393585 UNC13AQ9UPW8 1703 aa18.83■□□□□ 0.61
CASP3-202ENST00000393585 MROH2BQ7Z745 1585 aa18.72■□□□□ 0.59
CASP3-202ENST00000393585 PABPN1Q86U42 306 aaKnown RBP eCLIP18.65■□□□□ 0.58
CASP3-202ENST00000393585 BICRAQ9NZM4 1560 aa18.61■□□□□ 0.57
CASP3-202ENST00000393585 WIZO95785 1651 aa18.6■□□□□ 0.57
CASP3-202ENST00000393585 BAZ1AQ9NRL2 1556 aaPredicted RBP18.59■□□□□ 0.57
CASP3-202ENST00000393585 SMARCA4P51532 1647 aa18.5■□□□□ 0.55
CASP3-202ENST00000393585 TOP2AP11388 1531 aaKnown RBP18.32■□□□□ 0.52
CASP3-202ENST00000393585 TRIM41Q8WV44 630 aa18.21■□□□□ 0.51
CASP3-202ENST00000393585 CCDC88BA6NC98 1476 aa18.2■□□□□ 0.5
CASP3-202ENST00000393585 SMARCA2P51531 1590 aa18.2■□□□□ 0.5
CASP3-202ENST00000393585 PEG3Q9GZU2 1588 aa18.19■□□□□ 0.5
CASP3-202ENST00000393585 EIF4G1Q04637 1599 aaKnown RBP18.14■□□□□ 0.49
CASP3-202ENST00000393585 ATAD2BQ9ULI0 1458 aa18.14■□□□□ 0.49
CASP3-202ENST00000393585 LOC105371045A0A1W2PR82 267 aa18.11■□□□□ 0.49
CASP3-202ENST00000393585 BAZ1BQ9UIG0 1483 aaKnown RBP18.06■□□□□ 0.48
CASP3-202ENST00000393585 FAM9AQ8IZU1 332 aaPredicted RBP18.02■□□□□ 0.47
CASP3-202ENST00000393585 ABCC8Q09428 1581 aa17.99■□□□□ 0.47
CASP3-202ENST00000393585 NCAPD3P42695 1498 aa17.88■□□□□ 0.45
CASP3-202ENST00000393585 HMGXB3Q12766 1538 aa17.86■□□□□ 0.45
CASP3-202ENST00000393585 EHMT2Q96KQ7 1210 aa17.85■□□□□ 0.45
CASP3-202ENST00000393585 PHF23Q9BUL5 403 aaPredicted RBP17.79■□□□□ 0.44
CASP3-202ENST00000393585 WRNQ14191 1432 aaPredicted RBP eCLIP17.76■□□□□ 0.43
CASP3-202ENST00000393585 CC2D2AQ9P2K1 1620 aa17.72■□□□□ 0.43
CASP3-202ENST00000393585 SOGA1O94964 1423 aa17.7■□□□□ 0.42
CASP3-202ENST00000393585 SYNJ1O43426 1573 aa17.7■□□□□ 0.42
CASP3-202ENST00000393585 RUSC2Q8N2Y8 1516 aa17.64■□□□□ 0.41
CASP3-202ENST00000393585 CFTRP13569 1480 aa17.59■□□□□ 0.41
CASP3-202ENST00000393585 PCGF6Q9BYE7 350 aa17.57■□□□□ 0.4
CASP3-202ENST00000393585 EEA1Q15075 1411 aa17.56■□□□□ 0.4
CASP3-202ENST00000393585 CSRNP3Q8WYN3 585 aa17.55■□□□□ 0.4
CASP3-202ENST00000393585 TOP2BQ02880 1626 aa17.53■□□□□ 0.4
CASP3-202ENST00000393585 BIVM-ERCC5R4GMW8 1640 aa17.49■□□□□ 0.39
CASP3-202ENST00000393585 CADPSQ9ULU8 1353 aa17.49■□□□□ 0.39
CASP3-202ENST00000393585 CUX1P39880 1505 aa17.47■□□□□ 0.39
CASP3-202ENST00000393585 SENP3Q9H4L4 574 aaPredicted RBP17.46■□□□□ 0.39
CASP3-202ENST00000393585 PRDM2Q13029 1718 aa17.46■□□□□ 0.39
CASP3-202ENST00000393585 UBTFP17480 764 aaKnown RBP17.42■□□□□ 0.38
CASP3-202ENST00000393585 GOLGA3Q08378 1498 aa17.4■□□□□ 0.38
CASP3-202ENST00000393585 TNIKQ9UKE5 1360 aa17.39■□□□□ 0.38
CASP3-202ENST00000393585 CEP162Q5TB80 1403 aa17.38■□□□□ 0.37
CASP3-202ENST00000393585 TRIM26Q12899 539 aaPredicted RBP17.38■□□□□ 0.37
CASP3-202ENST00000393585 CEP164Q9UPV0 1460 aa17.37■□□□□ 0.37
CASP3-202ENST00000393585 DNAJC5BQ9UF47 199 aa17.36■□□□□ 0.37
CASP3-202ENST00000393585 KIF21BO75037 1637 aa17.35■□□□□ 0.37
CASP3-202ENST00000393585 NESP48681 1621 aa17.35■□□□□ 0.37
CASP3-202ENST00000393585 FANCD2Q9BXW9 1451 aa17.32■□□□□ 0.36
CASP3-202ENST00000393585 PPARGC1BQ86YN6 1023 aaKnown RBP17.32■□□□□ 0.36
CASP3-202ENST00000393585 RAPGEF2Q9Y4G8 1499 aa17.31■□□□□ 0.36
CASP3-202ENST00000393585 KIF27Q86VH2 1401 aa17.25■□□□□ 0.35
CASP3-202ENST00000393585 FGD5Q6ZNL6 1462 aa17.24■□□□□ 0.35
CASP3-202ENST00000393585 LAMC3Q9Y6N6 1575 aa17.22■□□□□ 0.35
CASP3-202ENST00000393585 HRCP23327 699 aa17.21■□□□□ 0.35
CASP3-202ENST00000393585 PRXQ9BXM0 1461 aa17.21■□□□□ 0.35
CASP3-202ENST00000393585 CUX2O14529 1486 aa17.2■□□□□ 0.34
CASP3-202ENST00000393585 RANGAP1P46060 587 aaPredicted RBP17.18■□□□□ 0.34
CASP3-202ENST00000393585 CLIP1P30622 1438 aa17.17■□□□□ 0.34
CASP3-202ENST00000393585 DNMBPQ6XZF7 1577 aa17.17■□□□□ 0.34
CASP3-202ENST00000393585 ERICH3Q5RHP9 1530 aa17.17■□□□□ 0.34
CASP3-202ENST00000393585 TOPBP1Q92547 1522 aa17.16■□□□□ 0.34
CASP3-202ENST00000393585 TTBK1Q5TCY1 1321 aaPredicted RBP17.15■□□□□ 0.34
CASP3-202ENST00000393585 RAD54L2Q9Y4B4 1467 aa17.12■□□□□ 0.33
CASP3-202ENST00000393585 POLA1P09884 1462 aaPredicted RBP17.11■□□□□ 0.33
CASP3-202ENST00000393585 PDS5BQ9NTI5 1447 aa17.11■□□□□ 0.33
CASP3-202ENST00000393585 IGF1RP08069 1367 aa17.1■□□□□ 0.33
CASP3-202ENST00000393585 URB2Q14146 1524 aaKnown RBP17.1■□□□□ 0.33
CASP3-202ENST00000393585 KIF21AQ7Z4S6 1674 aa17.08■□□□□ 0.32
CASP3-202ENST00000393585 ABCA10Q8WWZ4 1543 aa17.04■□□□□ 0.32
CASP3-202ENST00000393585 VPS8Q8N3P4 1428 aa17.04■□□□□ 0.32
CASP3-202ENST00000393585 CARMIL1Q5VZK9 1371 aa17.03■□□□□ 0.32
CASP3-202ENST00000393585 ARAP1Q96P48 1450 aa16.97■□□□□ 0.31
CASP3-202ENST00000393585 WDR97A6NE52 1622 aa16.95■□□□□ 0.3
CASP3-202ENST00000393585 TDRD9Q8NDG6 1382 aaKnown RBP16.93■□□□□ 0.3
CASP3-202ENST00000393585 APLP2Q06481 763 aa16.91■□□□□ 0.3
CASP3-202ENST00000393585 ARHGAP35Q9NRY4 1499 aa16.91■□□□□ 0.3
CASP3-202ENST00000393585 ABCA5Q8WWZ7 1642 aa16.88■□□□□ 0.29
CASP3-202ENST00000393585 MRC2Q9UBG0 1479 aa16.87■□□□□ 0.29
CASP3-202ENST00000393585 CUL7Q14999 1698 aa16.87■□□□□ 0.29
CASP3-202ENST00000393585 GAPVD1Q14C86 1478 aa16.87■□□□□ 0.29
CASP3-202ENST00000393585 TARBP1Q13395 1621 aaKnown RBP16.86■□□□□ 0.29
CASP3-202ENST00000393585 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.8■□□□□ 0.28
CASP3-202ENST00000393585 P3H3Q8IVL6 736 aa16.78■□□□□ 0.28
CASP3-202ENST00000393585 AQRO60306 1485 aaKnown RBP eCLIP16.77■□□□□ 0.28
CASP3-202ENST00000393585 ERCC6Q03468 1493 aa16.77■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 147.3 ms