RNA–Protein interactions for RNA: ENST00000393387.5

PHF3-202, Transcript of PHD finger protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PHF3, Length 6,947 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHF3-202ENST00000393387 AEBP2Q6ZN18 517 aaPredicted RBP5.9□□□□□ -1.46
PHF3-202ENST00000393387 CHIC1Q5VXU3 224 aa5.84□□□□□ -1.47
PHF3-202ENST00000393387 MYT1Q01538 1121 aa5.58□□□□□ -1.52
PHF3-202ENST00000393387 ERICH6Q7L0X2 663 aa5.45□□□□□ -1.54
PHF3-202ENST00000393387 PELP1Q8IZL8 1130 aaKnown RBP5.45□□□□□ -1.54
PHF3-202ENST00000393387 PHF23Q9BUL5 403 aaPredicted RBP5.27□□□□□ -1.57
PHF3-202ENST00000393387 EHMT2Q96KQ7 1210 aa5.25□□□□□ -1.57
PHF3-202ENST00000393387 TTBK1Q5TCY1 1321 aaPredicted RBP5.2□□□□□ -1.58
PHF3-202ENST00000393387 CCER1Q8TC90 406 aaPredicted RBP5.19□□□□□ -1.58
PHF3-202ENST00000393387 YTHDC1Q96MU7 727 aaKnown RBP5.19□□□□□ -1.58
PHF3-202ENST00000393387 RANGAP1P46060 587 aaPredicted RBP5.13□□□□□ -1.59
PHF3-202ENST00000393387 CENPBP07199 599 aaPredicted RBP5.12□□□□□ -1.59
PHF3-202ENST00000393387 DCAF8L2P0C7V8 631 aa5.09□□□□□ -1.59
PHF3-202ENST00000393387 PCGF6Q9BYE7 350 aa5.03□□□□□ -1.6
PHF3-202ENST00000393387 NEFLP07196 543 aa5.02□□□□□ -1.61
PHF3-202ENST00000393387 EIF5BO60841 1220 aaKnown RBP5.01□□□□□ -1.61
PHF3-202ENST00000393387 DAXXQ9UER7 740 aaPredicted RBP5□□□□□ -1.61
PHF3-202ENST00000393387 SUPT5HO00267 1087 aaKnown RBP5□□□□□ -1.61
PHF3-202ENST00000393387 RTL5Q5HYW3 569 aaPredicted RBP4.97□□□□□ -1.61
PHF3-202ENST00000393387 ZNF316A6NFI3 1004 aaPredicted RBP4.91□□□□□ -1.62
PHF3-202ENST00000393387 DNAJC5BQ9UF47 199 aa4.9□□□□□ -1.62
PHF3-202ENST00000393387 BCANQ96GW7 911 aa4.89□□□□□ -1.63
PHF3-202ENST00000393387 CNGB1Q14028 1251 aaPredicted RBP4.87□□□□□ -1.63
PHF3-202ENST00000393387 AMER1Q5JTC6 1135 aaPredicted RBP4.87□□□□□ -1.63
PHF3-202ENST00000393387 FAM9AQ8IZU1 332 aaPredicted RBP4.84□□□□□ -1.63
PHF3-202ENST00000393387 APLP2Q06481 763 aa4.83□□□□□ -1.64
PHF3-202ENST00000393387 GLIPR1L2Q4G1C9 344 aa4.83□□□□□ -1.64
PHF3-202ENST00000393387 PPARGC1BQ86YN6 1023 aaKnown RBP4.82□□□□□ -1.64
PHF3-202ENST00000393387 CLSPNQ9HAW4 1339 aa4.8□□□□□ -1.64
PHF3-202ENST00000393387 POLR3GLQ9BT43 218 aa4.8□□□□□ -1.64
PHF3-202ENST00000393387 ZEB1P37275 1124 aaPredicted RBP4.79□□□□□ -1.64
PHF3-202ENST00000393387 GTF3C3Q9Y5Q9 886 aa4.79□□□□□ -1.64
PHF3-202ENST00000393387 ARXQ96QS3 562 aa4.78□□□□□ -1.64
PHF3-202ENST00000393387 SHROOM4Q9ULL8 1493 aa4.78□□□□□ -1.64
PHF3-202ENST00000393387 BCL11AQ9H165 835 aa4.77□□□□□ -1.65
PHF3-202ENST00000393387 MYT1LQ9UL68 1186 aa4.75□□□□□ -1.65
PHF3-202ENST00000393387 NBR1Q14596 966 aa4.74□□□□□ -1.65
PHF3-202ENST00000393387 NPM2Q86SE8 214 aaKnown RBP4.74□□□□□ -1.65
PHF3-202ENST00000393387 HRCP23327 699 aa4.74□□□□□ -1.65
PHF3-202ENST00000393387 RTN4Q9NQC3 1192 aaKnown RBP4.74□□□□□ -1.65
PHF3-202ENST00000393387 ATP1B4Q9UN42 357 aaPredicted RBP4.72□□□□□ -1.65
PHF3-202ENST00000393387 SENP3Q9H4L4 574 aaPredicted RBP4.72□□□□□ -1.65
PHF3-202ENST00000393387 CDK11AQ9UQ88 783 aaPredicted RBP4.68□□□□□ -1.66
PHF3-202ENST00000393387 CDK11BP21127 795 aaKnown RBP4.65□□□□□ -1.66
PHF3-202ENST00000393387 ZBTB4Q9P1Z0 1013 aaPredicted RBP4.64□□□□□ -1.67
PHF3-202ENST00000393387 ARID4BQ4LE39 1312 aaPredicted RBP4.64□□□□□ -1.67
PHF3-202ENST00000393387 DIEXFQ68CQ4 756 aaKnown RBP4.63□□□□□ -1.67
PHF3-202ENST00000393387 SLC4A1APQ9BWU0 796 aaKnown RBP4.63□□□□□ -1.67
PHF3-202ENST00000393387 ANP32AP39687 249 aaKnown RBP4.63□□□□□ -1.67
PHF3-202ENST00000393387 ANP32BQ92688 251 aaKnown RBP4.62□□□□□ -1.67
PHF3-202ENST00000393387 ITGAEP38570 1179 aa4.62□□□□□ -1.67
PHF3-202ENST00000393387 ARID3AQ99856 593 aa4.61□□□□□ -1.67
PHF3-202ENST00000393387 NAP1L5Q96NT1 182 aaPredicted RBP4.61□□□□□ -1.67
PHF3-202ENST00000393387 TNNT2P45379 298 aaPredicted RBP4.6□□□□□ -1.67
PHF3-202ENST00000393387 CCDC136Q96JN2 1154 aa4.57□□□□□ -1.68
PHF3-202ENST00000393387 ACIN1Q9UKV3 1341 aaKnown RBP4.57□□□□□ -1.68
PHF3-202ENST00000393387 A0A0U1RQG5 324 aaPredicted RBP4.57□□□□□ -1.68
PHF3-202ENST00000393387 ZNF326Q5BKZ1 582 aaKnown RBP4.57□□□□□ -1.68
PHF3-202ENST00000393387 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP4.56□□□□□ -1.68
PHF3-202ENST00000393387 PLPPR3Q6T4P5 718 aa4.56□□□□□ -1.68
PHF3-202ENST00000393387 ZBTB7CA1YPR0 619 aa4.56□□□□□ -1.68
PHF3-202ENST00000393387 TPRNQ4KMQ1 711 aa4.56□□□□□ -1.68
PHF3-202ENST00000393387 FKBP8Q14318 412 aa4.55□□□□□ -1.68
PHF3-202ENST00000393387 HNRNPUL2Q1KMD3 747 aaKnown RBP4.55□□□□□ -1.68
PHF3-202ENST00000393387 CANXP27824 592 aaKnown RBP4.54□□□□□ -1.68
PHF3-202ENST00000393387 HSP90AA1P07900 732 aaKnown RBP4.54□□□□□ -1.68
PHF3-202ENST00000393387 TRIM26Q12899 539 aaPredicted RBP4.54□□□□□ -1.68
PHF3-202ENST00000393387 ZBTB47Q9UFB7 747 aaPredicted RBP4.54□□□□□ -1.68
PHF3-202ENST00000393387 SLC24A1O60721 1099 aa4.54□□□□□ -1.68
PHF3-202ENST00000393387 ANP32EQ9BTT0 268 aa4.52□□□□□ -1.69
PHF3-202ENST00000393387 SCAF1Q9H7N4 1312 aaKnown RBP4.52□□□□□ -1.69
PHF3-202ENST00000393387 UBTFP17480 764 aaKnown RBP4.52□□□□□ -1.69
PHF3-202ENST00000393387 DNTTIP2Q5QJE6 756 aaKnown RBP4.51□□□□□ -1.69
PHF3-202ENST00000393387 TRIM44Q96DX7 344 aaPredicted RBP4.5□□□□□ -1.69
PHF3-202ENST00000393387 IRX6P78412 446 aaPredicted RBP4.5□□□□□ -1.69
PHF3-202ENST00000393387 LAS1LQ9Y4W2 734 aaKnown RBP4.48□□□□□ -1.69
PHF3-202ENST00000393387 NEFMP07197 916 aa4.48□□□□□ -1.69
PHF3-202ENST00000393387 FOXD1Q16676 465 aa4.48□□□□□ -1.69
PHF3-202ENST00000393387 TULP1O00294 542 aaPredicted RBP4.48□□□□□ -1.69
PHF3-202ENST00000393387 NCLP19338 710 aaKnown RBP4.47□□□□□ -1.69
PHF3-202ENST00000393387 CALRP27797 417 aaKnown RBP4.47□□□□□ -1.69
PHF3-202ENST00000393387 PODXL2Q9NZ53 605 aa4.47□□□□□ -1.69
PHF3-202ENST00000393387 PTMAP06454 111 aaKnown RBP4.47□□□□□ -1.69
PHF3-202ENST00000393387 TNNT3P45378 269 aaPredicted RBP4.47□□□□□ -1.69
PHF3-202ENST00000393387 NEUROD1Q13562 356 aa4.47□□□□□ -1.69
PHF3-202ENST00000393387 TRIM41Q8WV44 630 aa4.47□□□□□ -1.69
PHF3-202ENST00000393387 VSIG10Q8N0Z9 540 aa4.46□□□□□ -1.69
PHF3-202ENST00000393387 ANP32CO43423 234 aa4.45□□□□□ -1.7
PHF3-202ENST00000393387 DEKP35659 375 aaKnown RBP4.45□□□□□ -1.7
PHF3-202ENST00000393387 NCBP3Q53F19 620 aaKnown RBP4.45□□□□□ -1.7
PHF3-202ENST00000393387 PPP6R1Q9UPN7 881 aa4.45□□□□□ -1.7
PHF3-202ENST00000393387 PLCB2Q00722 1185 aa4.43□□□□□ -1.7
PHF3-202ENST00000393387 SALL2Q9Y467 1007 aaPredicted RBP4.43□□□□□ -1.7
PHF3-202ENST00000393387 PRKCSHP14314 528 aaPredicted RBP4.43□□□□□ -1.7
PHF3-202ENST00000393387 LOC105371045A0A1W2PR82 267 aa4.42□□□□□ -1.7
PHF3-202ENST00000393387 TIMELESSQ9UNS1 1208 aa4.42□□□□□ -1.7
PHF3-202ENST00000393387 ERICH6BQ5W0A0 696 aa4.42□□□□□ -1.7
PHF3-202ENST00000393387 TAOK2Q9UL54 1235 aa4.42□□□□□ -1.7
PHF3-202ENST00000393387 UPF2Q9HAU5 1272 aaKnown RBP4.42□□□□□ -1.7
PHF3-202ENST00000393387 APPP05067 770 aa4.41□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms