RNA–Protein interactions for RNA: ENST00000392557.8

BRF1-204, Transcript of BRF1, RNA polymerase III transcription initiation factor subunit, humanhuman

TSL 1 (best) BASIC

Gene BRF1, Length 3,579 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRF1-204ENST00000392557 NISCHQ9Y2I1 1504 aa22.53■■□□□ 1.2
BRF1-204ENST00000392557 SHROOM4Q9ULL8 1493 aa19.32■□□□□ 0.68
BRF1-204ENST00000392557 DCAF8L2P0C7V8 631 aa19.28■□□□□ 0.68
BRF1-204ENST00000392557 CCDC180Q9P1Z9 1646 aa19.19■□□□□ 0.66
BRF1-204ENST00000392557 ZCCHC6Q5VYS8 1495 aaKnown RBP18.95■□□□□ 0.62
BRF1-204ENST00000392557 SUPT5HO00267 1087 aaKnown RBP18.82■□□□□ 0.6
BRF1-204ENST00000392557 ABCC9O60706 1549 aa18.4■□□□□ 0.54
BRF1-204ENST00000392557 DCAF1Q9Y4B6 1507 aa18.33■□□□□ 0.53
BRF1-204ENST00000392557 SCRIBQ14160 1630 aa18.17■□□□□ 0.5
BRF1-204ENST00000392557 CHIC1Q5VXU3 224 aa17.93■□□□□ 0.46
BRF1-204ENST00000392557 MYO15BQ96JP2 1530 aa17.91■□□□□ 0.46
BRF1-204ENST00000392557 NACADO15069 1562 aa17.9■□□□□ 0.46
BRF1-204ENST00000392557 EHMT2Q96KQ7 1210 aa17.87■□□□□ 0.45
BRF1-204ENST00000392557 PCGF6Q9BYE7 350 aa17.87■□□□□ 0.45
BRF1-204ENST00000392557 RSF1Q96T23 1441 aaPredicted RBP17.75■□□□□ 0.43
BRF1-204ENST00000392557 HRCP23327 699 aa17.75■□□□□ 0.43
BRF1-204ENST00000392557 RB1CC1Q8TDY2 1594 aa17.74■□□□□ 0.43
BRF1-204ENST00000392557 CECR2Q9BXF3 1484 aa17.69■□□□□ 0.42
BRF1-204ENST00000392557 PABPN1Q86U42 306 aaKnown RBP eCLIP17.63■□□□□ 0.41
BRF1-204ENST00000392557 PPARGC1BQ86YN6 1023 aaKnown RBP17.6■□□□□ 0.41
BRF1-204ENST00000392557 MROH2BQ7Z745 1585 aa17.55■□□□□ 0.4
BRF1-204ENST00000392557 LOC105371045A0A1W2PR82 267 aa17.53■□□□□ 0.4
BRF1-204ENST00000392557 FAM9AQ8IZU1 332 aaPredicted RBP17.5■□□□□ 0.39
BRF1-204ENST00000392557 TRIM41Q8WV44 630 aa17.48■□□□□ 0.39
BRF1-204ENST00000392557 WIZO95785 1651 aa17.44■□□□□ 0.38
BRF1-204ENST00000392557 UNC13AQ9UPW8 1703 aa17.37■□□□□ 0.37
BRF1-204ENST00000392557 BAZ1AQ9NRL2 1556 aaPredicted RBP17.34■□□□□ 0.37
BRF1-204ENST00000392557 SMARCA4P51532 1647 aa17.22■□□□□ 0.35
BRF1-204ENST00000392557 BICRAQ9NZM4 1560 aa17.2■□□□□ 0.34
BRF1-204ENST00000392557 TRIM26Q12899 539 aaPredicted RBP17.19■□□□□ 0.34
BRF1-204ENST00000392557 TTBK1Q5TCY1 1321 aaPredicted RBP17.18■□□□□ 0.34
BRF1-204ENST00000392557 TOP2AP11388 1531 aaKnown RBP17.1■□□□□ 0.33
BRF1-204ENST00000392557 CCDC88BA6NC98 1476 aa17.09■□□□□ 0.33
BRF1-204ENST00000392557 SMARCA2P51531 1590 aa17■□□□□ 0.31
BRF1-204ENST00000392557 ABCC8Q09428 1581 aa17■□□□□ 0.31
BRF1-204ENST00000392557 BAZ1BQ9UIG0 1483 aaKnown RBP16.91■□□□□ 0.3
BRF1-204ENST00000392557 ZEB1P37275 1124 aaPredicted RBP16.91■□□□□ 0.3
BRF1-204ENST00000392557 ATAD2BQ9ULI0 1458 aa16.91■□□□□ 0.3
BRF1-204ENST00000392557 EIF4G1Q04637 1599 aaKnown RBP16.86■□□□□ 0.29
BRF1-204ENST00000392557 SOGA1O94964 1423 aa16.78■□□□□ 0.28
BRF1-204ENST00000392557 PEG3Q9GZU2 1588 aa16.78■□□□□ 0.28
BRF1-204ENST00000392557 RANGAP1P46060 587 aaPredicted RBP16.77■□□□□ 0.28
BRF1-204ENST00000392557 UBTFP17480 764 aaKnown RBP16.77■□□□□ 0.28
BRF1-204ENST00000392557 WRNQ14191 1432 aaPredicted RBP eCLIP16.74■□□□□ 0.27
BRF1-204ENST00000392557 RUSC2Q8N2Y8 1516 aa16.71■□□□□ 0.27
BRF1-204ENST00000392557 CCER1Q8TC90 406 aaPredicted RBP16.71■□□□□ 0.26
BRF1-204ENST00000392557 CSRNP3Q8WYN3 585 aa16.7■□□□□ 0.26
BRF1-204ENST00000392557 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.69■□□□□ 0.26
BRF1-204ENST00000392557 SCAF1Q9H7N4 1312 aaKnown RBP16.61■□□□□ 0.25
BRF1-204ENST00000392557 SYNJ1O43426 1573 aa16.6■□□□□ 0.25
BRF1-204ENST00000392557 NCAPD3P42695 1498 aa16.59■□□□□ 0.25
BRF1-204ENST00000392557 PELP1Q8IZL8 1130 aaKnown RBP16.55■□□□□ 0.24
BRF1-204ENST00000392557 CEP162Q5TB80 1403 aa16.54■□□□□ 0.24
BRF1-204ENST00000392557 EEA1Q15075 1411 aa16.52■□□□□ 0.24
BRF1-204ENST00000392557 HMGXB3Q12766 1538 aa16.51■□□□□ 0.23
BRF1-204ENST00000392557 TNIKQ9UKE5 1360 aa16.47■□□□□ 0.23
BRF1-204ENST00000392557 GOLGA3Q08378 1498 aa16.47■□□□□ 0.23
BRF1-204ENST00000392557 CC2D2AQ9P2K1 1620 aa16.42■□□□□ 0.22
BRF1-204ENST00000392557 DIEXFQ68CQ4 756 aaKnown RBP16.41■□□□□ 0.22
BRF1-204ENST00000392557 CEP164Q9UPV0 1460 aa16.4■□□□□ 0.22
BRF1-204ENST00000392557 CENPBP07199 599 aaPredicted RBP16.38■□□□□ 0.21
BRF1-204ENST00000392557 CFTRP13569 1480 aa16.38■□□□□ 0.21
BRF1-204ENST00000392557 TOP2BQ02880 1626 aa16.37■□□□□ 0.21
BRF1-204ENST00000392557 RAPGEF2Q9Y4G8 1499 aa16.37■□□□□ 0.21
BRF1-204ENST00000392557 NEUROD1Q13562 356 aa16.37■□□□□ 0.21
BRF1-204ENST00000392557 YTHDC1Q96MU7 727 aaKnown RBP16.37■□□□□ 0.21
BRF1-204ENST00000392557 ACIN1Q9UKV3 1341 aaKnown RBP16.36■□□□□ 0.21
BRF1-204ENST00000392557 CUX1P39880 1505 aa16.35■□□□□ 0.21
BRF1-204ENST00000392557 CADPSQ9ULU8 1353 aa16.34■□□□□ 0.21
BRF1-204ENST00000392557 GTF3C3Q9Y5Q9 886 aa16.34■□□□□ 0.21
BRF1-204ENST00000392557 APLP2Q06481 763 aa16.33■□□□□ 0.2
BRF1-204ENST00000392557 CLIP1P30622 1438 aa16.33■□□□□ 0.2
BRF1-204ENST00000392557 DNAJC5BQ9UF47 199 aa16.28■□□□□ 0.2
BRF1-204ENST00000392557 KIF27Q86VH2 1401 aa16.27■□□□□ 0.19
BRF1-204ENST00000392557 BIVM-ERCC5R4GMW8 1640 aa16.26■□□□□ 0.19
BRF1-204ENST00000392557 KIF21BO75037 1637 aa16.26■□□□□ 0.19
BRF1-204ENST00000392557 NESP48681 1621 aa16.24■□□□□ 0.19
BRF1-204ENST00000392557 HNRNPUL2Q1KMD3 747 aaKnown RBP16.23■□□□□ 0.19
BRF1-204ENST00000392557 CUX2O14529 1486 aa16.22■□□□□ 0.19
BRF1-204ENST00000392557 FANCD2Q9BXW9 1451 aa16.19■□□□□ 0.18
BRF1-204ENST00000392557 FGD5Q6ZNL6 1462 aa16.17■□□□□ 0.18
BRF1-204ENST00000392557 PRXQ9BXM0 1461 aa16.14■□□□□ 0.17
BRF1-204ENST00000392557 VPS8Q8N3P4 1428 aa16.14■□□□□ 0.17
BRF1-204ENST00000392557 ZNF316A6NFI3 1004 aaPredicted RBP16.11■□□□□ 0.17
BRF1-204ENST00000392557 P3H3Q8IVL6 736 aa16.11■□□□□ 0.17
BRF1-204ENST00000392557 ATP1B4Q9UN42 357 aaPredicted RBP16.11■□□□□ 0.17
BRF1-204ENST00000392557 RAD54L2Q9Y4B4 1467 aa16.1■□□□□ 0.17
BRF1-204ENST00000392557 IGF1RP08069 1367 aa16.09■□□□□ 0.17
BRF1-204ENST00000392557 PRDM2Q13029 1718 aa16.09■□□□□ 0.17
BRF1-204ENST00000392557 CARMIL1Q5VZK9 1371 aa16.08■□□□□ 0.16
BRF1-204ENST00000392557 ERICH3Q5RHP9 1530 aa16.06■□□□□ 0.16
BRF1-204ENST00000392557 ITGAEP38570 1179 aa16.03■□□□□ 0.16
BRF1-204ENST00000392557 MYT1Q01538 1121 aa16.02■□□□□ 0.16
BRF1-204ENST00000392557 KANK4Q5T7N3 995 aaPredicted RBP16.02■□□□□ 0.16
BRF1-204ENST00000392557 TOPBP1Q92547 1522 aa16.01■□□□□ 0.15
BRF1-204ENST00000392557 ARAP1Q96P48 1450 aa16.01■□□□□ 0.15
BRF1-204ENST00000392557 POLA1P09884 1462 aaPredicted RBP16■□□□□ 0.15
BRF1-204ENST00000392557 TDRD9Q8NDG6 1382 aaKnown RBP15.99■□□□□ 0.15
BRF1-204ENST00000392557 MIER1Q8N108 512 aa15.98■□□□□ 0.15
BRF1-204ENST00000392557 DNMBPQ6XZF7 1577 aa15.97■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 10.1 ms