RNA–Protein interactions for RNA: ENST00000391945.8

ERCC2-204, Transcript of ERCC excision repair 2, TFIIH core complex helicase subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene ERCC2, Length 4,153 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC2-204ENST00000391945 NISCHQ9Y2I1 1504 aa25.37■■□□□ 1.65
ERCC2-204ENST00000391945 DCAF8L2P0C7V8 631 aa23.53■■□□□ 1.36
ERCC2-204ENST00000391945 SHROOM4Q9ULL8 1493 aa22.73■■□□□ 1.23
ERCC2-204ENST00000391945 SUPT5HO00267 1087 aaKnown RBP22.44■■□□□ 1.18
ERCC2-204ENST00000391945 ABCC9O60706 1549 aa21.42■■□□□ 1.02
ERCC2-204ENST00000391945 CCDC180Q9P1Z9 1646 aa21.22■□□□□ 0.99
ERCC2-204ENST00000391945 EHMT2Q96KQ7 1210 aa21.18■□□□□ 0.98
ERCC2-204ENST00000391945 ZCCHC6Q5VYS8 1495 aaKnown RBP21.15■□□□□ 0.98
ERCC2-204ENST00000391945 FAM9AQ8IZU1 332 aaPredicted RBP20.97■□□□□ 0.95
ERCC2-204ENST00000391945 PABPN1Q86U42 306 aaKnown RBP eCLIP20.85■□□□□ 0.93
ERCC2-204ENST00000391945 TRIM41Q8WV44 630 aa20.79■□□□□ 0.92
ERCC2-204ENST00000391945 CHIC1Q5VXU3 224 aa20.7■□□□□ 0.9
ERCC2-204ENST00000391945 SCRIBQ14160 1630 aa20.66■□□□□ 0.9
ERCC2-204ENST00000391945 LOC105371045A0A1W2PR82 267 aa20.43■□□□□ 0.86
ERCC2-204ENST00000391945 PCGF6Q9BYE7 350 aa20.36■□□□□ 0.85
ERCC2-204ENST00000391945 DCAF1Q9Y4B6 1507 aa20.32■□□□□ 0.84
ERCC2-204ENST00000391945 TTBK1Q5TCY1 1321 aaPredicted RBP20.32■□□□□ 0.84
ERCC2-204ENST00000391945 RANGAP1P46060 587 aaPredicted RBP20.32■□□□□ 0.84
ERCC2-204ENST00000391945 NACADO15069 1562 aa20.24■□□□□ 0.83
ERCC2-204ENST00000391945 RB1CC1Q8TDY2 1594 aa20.23■□□□□ 0.83
ERCC2-204ENST00000391945 UBTFP17480 764 aaKnown RBP20.21■□□□□ 0.83
ERCC2-204ENST00000391945 RSF1Q96T23 1441 aaPredicted RBP20.11■□□□□ 0.81
ERCC2-204ENST00000391945 PPARGC1BQ86YN6 1023 aaKnown RBP20.1■□□□□ 0.81
ERCC2-204ENST00000391945 APLP2Q06481 763 aa20.06■□□□□ 0.8
ERCC2-204ENST00000391945 CECR2Q9BXF3 1484 aa20.01■□□□□ 0.79
ERCC2-204ENST00000391945 MYO15BQ96JP2 1530 aa19.85■□□□□ 0.77
ERCC2-204ENST00000391945 ATP1B4Q9UN42 357 aaPredicted RBP19.81■□□□□ 0.76
ERCC2-204ENST00000391945 MROH2BQ7Z745 1585 aa19.75■□□□□ 0.75
ERCC2-204ENST00000391945 TRIM26Q12899 539 aaPredicted RBP19.72■□□□□ 0.75
ERCC2-204ENST00000391945 HRCP23327 699 aa19.68■□□□□ 0.74
ERCC2-204ENST00000391945 BAZ1AQ9NRL2 1556 aaPredicted RBP19.68■□□□□ 0.74
ERCC2-204ENST00000391945 CSRNP3Q8WYN3 585 aa19.6■□□□□ 0.73
ERCC2-204ENST00000391945 CCER1Q8TC90 406 aaPredicted RBP19.59■□□□□ 0.73
ERCC2-204ENST00000391945 BAZ1BQ9UIG0 1483 aaKnown RBP19.51■□□□□ 0.71
ERCC2-204ENST00000391945 WIZO95785 1651 aa19.5■□□□□ 0.71
ERCC2-204ENST00000391945 HNRNPUL2Q1KMD3 747 aaKnown RBP19.39■□□□□ 0.69
ERCC2-204ENST00000391945 CCDC88BA6NC98 1476 aa19.38■□□□□ 0.69
ERCC2-204ENST00000391945 ITGAEP38570 1179 aa19.38■□□□□ 0.69
ERCC2-204ENST00000391945 ZEB1P37275 1124 aaPredicted RBP19.35■□□□□ 0.69
ERCC2-204ENST00000391945 WRNQ14191 1432 aaPredicted RBP eCLIP19.31■□□□□ 0.68
ERCC2-204ENST00000391945 SMARCA4P51532 1647 aa19.28■□□□□ 0.68
ERCC2-204ENST00000391945 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.28■□□□□ 0.68
ERCC2-204ENST00000391945 P3H3Q8IVL6 736 aa19.26■□□□□ 0.67
ERCC2-204ENST00000391945 ABCC8Q09428 1581 aa19.23■□□□□ 0.67
ERCC2-204ENST00000391945 TOP2AP11388 1531 aaKnown RBP19.22■□□□□ 0.67
ERCC2-204ENST00000391945 ATAD2BQ9ULI0 1458 aa19.2■□□□□ 0.66
ERCC2-204ENST00000391945 SMARCA2P51531 1590 aa19.17■□□□□ 0.66
ERCC2-204ENST00000391945 FBLN2P98095 1184 aa19.17■□□□□ 0.66
ERCC2-204ENST00000391945 SOGA1O94964 1423 aa19.16■□□□□ 0.66
ERCC2-204ENST00000391945 ARID3CA6NKF2 412 aa19.03■□□□□ 0.64
ERCC2-204ENST00000391945 FAM50AQ14320 339 aaKnown RBP19.03■□□□□ 0.64
ERCC2-204ENST00000391945 EEA1Q15075 1411 aa19.02■□□□□ 0.64
ERCC2-204ENST00000391945 CEP162Q5TB80 1403 aa19■□□□□ 0.63
ERCC2-204ENST00000391945 BICRAQ9NZM4 1560 aa18.98■□□□□ 0.63
ERCC2-204ENST00000391945 CLIP1P30622 1438 aa18.97■□□□□ 0.63
ERCC2-204ENST00000391945 GOLGA3Q08378 1498 aa18.97■□□□□ 0.63
ERCC2-204ENST00000391945 KIF27Q86VH2 1401 aa18.92■□□□□ 0.62
ERCC2-204ENST00000391945 TNIKQ9UKE5 1360 aa18.91■□□□□ 0.62
ERCC2-204ENST00000391945 EIF4G1Q04637 1599 aaKnown RBP18.9■□□□□ 0.62
ERCC2-204ENST00000391945 RUSC2Q8N2Y8 1516 aa18.88■□□□□ 0.61
ERCC2-204ENST00000391945 CEP164Q9UPV0 1460 aa18.87■□□□□ 0.61
ERCC2-204ENST00000391945 CADPSQ9ULU8 1353 aa18.87■□□□□ 0.61
ERCC2-204ENST00000391945 CUX2O14529 1486 aa18.83■□□□□ 0.6
ERCC2-204ENST00000391945 UNC13AQ9UPW8 1703 aa18.82■□□□□ 0.6
ERCC2-204ENST00000391945 NCAPD3P42695 1498 aa18.81■□□□□ 0.6
ERCC2-204ENST00000391945 YTHDC1Q96MU7 727 aaKnown RBP18.8■□□□□ 0.6
ERCC2-204ENST00000391945 CENPBP07199 599 aaPredicted RBP18.73■□□□□ 0.59
ERCC2-204ENST00000391945 CARMIL1Q5VZK9 1371 aa18.72■□□□□ 0.59
ERCC2-204ENST00000391945 CHMP7Q8WUX9 453 aaPredicted RBP18.71■□□□□ 0.59
ERCC2-204ENST00000391945 TDRD9Q8NDG6 1382 aaKnown RBP18.7■□□□□ 0.58
ERCC2-204ENST00000391945 NEUROD1Q13562 356 aa18.69■□□□□ 0.58
ERCC2-204ENST00000391945 MYT1LQ9UL68 1186 aa18.69■□□□□ 0.58
ERCC2-204ENST00000391945 ERCC6Q03468 1493 aa18.67■□□□□ 0.58
ERCC2-204ENST00000391945 PDS5BQ9NTI5 1447 aa18.66■□□□□ 0.58
ERCC2-204ENST00000391945 TRIM52Q96A61 297 aa18.66■□□□□ 0.58
ERCC2-204ENST00000391945 RAPGEF2Q9Y4G8 1499 aa18.64■□□□□ 0.57
ERCC2-204ENST00000391945 DIEXFQ68CQ4 756 aaKnown RBP18.63■□□□□ 0.57
ERCC2-204ENST00000391945 DNAJC5BQ9UF47 199 aa18.63■□□□□ 0.57
ERCC2-204ENST00000391945 FANCD2Q9BXW9 1451 aa18.63■□□□□ 0.57
ERCC2-204ENST00000391945 ZNF777Q9ULD5 760 aaPredicted RBP18.6■□□□□ 0.57
ERCC2-204ENST00000391945 CC2D2AQ9P2K1 1620 aa18.58■□□□□ 0.57
ERCC2-204ENST00000391945 MTUS2Q5JR59 1369 aa18.55■□□□□ 0.56
ERCC2-204ENST00000391945 SYNJ1O43426 1573 aa18.54■□□□□ 0.56
ERCC2-204ENST00000391945 CFTRP13569 1480 aa18.53■□□□□ 0.56
ERCC2-204ENST00000391945 NESP48681 1621 aa18.53■□□□□ 0.56
ERCC2-204ENST00000391945 CDK11AQ9UQ88 783 aaPredicted RBP18.53■□□□□ 0.56
ERCC2-204ENST00000391945 KANK4Q5T7N3 995 aaPredicted RBP18.52■□□□□ 0.55
ERCC2-204ENST00000391945 HMGXB3Q12766 1538 aa18.51■□□□□ 0.55
ERCC2-204ENST00000391945 CHIC2Q9UKJ5 165 aa18.51■□□□□ 0.55
ERCC2-204ENST00000391945 VPS8Q8N3P4 1428 aa18.51■□□□□ 0.55
ERCC2-204ENST00000391945 FGD5Q6ZNL6 1462 aa18.48■□□□□ 0.55
ERCC2-204ENST00000391945 RAD54L2Q9Y4B4 1467 aa18.47■□□□□ 0.55
ERCC2-204ENST00000391945 POLR3GLQ9BT43 218 aa18.45■□□□□ 0.54
ERCC2-204ENST00000391945 PEG3Q9GZU2 1588 aa18.45■□□□□ 0.54
ERCC2-204ENST00000391945 IGF1RP08069 1367 aa18.43■□□□□ 0.54
ERCC2-204ENST00000391945 CNGB1Q14028 1251 aaPredicted RBP18.41■□□□□ 0.54
ERCC2-204ENST00000391945 ZNF316A6NFI3 1004 aaPredicted RBP18.4■□□□□ 0.54
ERCC2-204ENST00000391945 CUX1P39880 1505 aa18.37■□□□□ 0.53
ERCC2-204ENST00000391945 ZNF326Q5BKZ1 582 aaKnown RBP18.34■□□□□ 0.53
ERCC2-204ENST00000391945 FHAD1B1AJZ9 1412 aa18.34■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms