RNA–Protein interactions for RNA: ENST00000380962.9

LCMT1-201, Transcript of leucine carboxyl methyltransferase 1, humanhuman

TSL 2

Gene LCMT1, Length 1,529 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LCMT1-201ENST00000380962 NISCHQ9Y2I1 1504 aa28.9■■■□□ 2.22
LCMT1-201ENST00000380962 CCDC180Q9P1Z9 1646 aa24.97■■□□□ 1.59
LCMT1-201ENST00000380962 ZCCHC6Q5VYS8 1495 aaKnown RBP24.41■■□□□ 1.5
LCMT1-201ENST00000380962 DCAF1Q9Y4B6 1507 aa24■■□□□ 1.43
LCMT1-201ENST00000380962 SHROOM4Q9ULL8 1493 aa23.79■■□□□ 1.4
LCMT1-201ENST00000380962 MYO15BQ96JP2 1530 aa23.52■■□□□ 1.36
LCMT1-201ENST00000380962 DCAF8L2P0C7V8 631 aa23.48■■□□□ 1.35
LCMT1-201ENST00000380962 SUPT5HO00267 1087 aaKnown RBP23.2■■□□□ 1.3
LCMT1-201ENST00000380962 NACADO15069 1562 aa23.13■■□□□ 1.29
LCMT1-201ENST00000380962 ABCC9O60706 1549 aa22.98■■□□□ 1.27
LCMT1-201ENST00000380962 SCRIBQ14160 1630 aa22.92■■□□□ 1.26
LCMT1-201ENST00000380962 RB1CC1Q8TDY2 1594 aa22.76■■□□□ 1.23
LCMT1-201ENST00000380962 RSF1Q96T23 1441 aaPredicted RBP22.61■■□□□ 1.21
LCMT1-201ENST00000380962 CHIC1Q5VXU3 224 aa22.61■■□□□ 1.21
LCMT1-201ENST00000380962 CECR2Q9BXF3 1484 aa22.33■■□□□ 1.17
LCMT1-201ENST00000380962 MROH2BQ7Z745 1585 aa22.29■■□□□ 1.16
LCMT1-201ENST00000380962 BAZ1AQ9NRL2 1556 aaPredicted RBP22.29■■□□□ 1.16
LCMT1-201ENST00000380962 UNC13AQ9UPW8 1703 aa22.23■■□□□ 1.15
LCMT1-201ENST00000380962 WIZO95785 1651 aa22.12■■□□□ 1.13
LCMT1-201ENST00000380962 SMARCA4P51532 1647 aa22.07■■□□□ 1.12
LCMT1-201ENST00000380962 BICRAQ9NZM4 1560 aa22.02■■□□□ 1.12
LCMT1-201ENST00000380962 TOP2AP11388 1531 aaKnown RBP22■■□□□ 1.11
LCMT1-201ENST00000380962 DNAJC5BQ9UF47 199 aa21.92■■□□□ 1.1
LCMT1-201ENST00000380962 EIF4G1Q04637 1599 aaKnown RBP21.86■■□□□ 1.09
LCMT1-201ENST00000380962 PEG3Q9GZU2 1588 aa21.86■■□□□ 1.09
LCMT1-201ENST00000380962 TRIM41Q8WV44 630 aa21.85■■□□□ 1.09
LCMT1-201ENST00000380962 SMARCA2P51531 1590 aa21.77■■□□□ 1.08
LCMT1-201ENST00000380962 CCDC88BA6NC98 1476 aa21.73■■□□□ 1.07
LCMT1-201ENST00000380962 PABPN1Q86U42 306 aaKnown RBP eCLIP21.71■■□□□ 1.07
LCMT1-201ENST00000380962 LOC105371045A0A1W2PR82 267 aa21.66■■□□□ 1.06
LCMT1-201ENST00000380962 ATAD2BQ9ULI0 1458 aa21.58■■□□□ 1.05
LCMT1-201ENST00000380962 BAZ1BQ9UIG0 1483 aaKnown RBP21.48■■□□□ 1.03
LCMT1-201ENST00000380962 ABCC8Q09428 1581 aa21.39■■□□□ 1.02
LCMT1-201ENST00000380962 EEA1Q15075 1411 aa21.38■■□□□ 1.01
LCMT1-201ENST00000380962 HMGXB3Q12766 1538 aa21.37■■□□□ 1.01
LCMT1-201ENST00000380962 FAM9AQ8IZU1 332 aaPredicted RBP21.34■■□□□ 1.01
LCMT1-201ENST00000380962 NCAPD3P42695 1498 aa21.33■■□□□ 1.01
LCMT1-201ENST00000380962 PCGF6Q9BYE7 350 aa21.29■■□□□ 1
LCMT1-201ENST00000380962 WRNQ14191 1432 aaPredicted RBP eCLIP21.27■■□□□ 1
LCMT1-201ENST00000380962 TRIM26Q12899 539 aaPredicted RBP21.27■■□□□ 1
LCMT1-201ENST00000380962 HRCP23327 699 aa21.25■□□□□ 0.99
LCMT1-201ENST00000380962 SOGA1O94964 1423 aa21.13■□□□□ 0.97
LCMT1-201ENST00000380962 SYNJ1O43426 1573 aa21.13■□□□□ 0.97
LCMT1-201ENST00000380962 TNIKQ9UKE5 1360 aa21.09■□□□□ 0.97
LCMT1-201ENST00000380962 CSRNP3Q8WYN3 585 aa21.09■□□□□ 0.97
LCMT1-201ENST00000380962 TOP2BQ02880 1626 aa21.06■□□□□ 0.96
LCMT1-201ENST00000380962 GOLGA3Q08378 1498 aa21.04■□□□□ 0.96
LCMT1-201ENST00000380962 BIVM-ERCC5R4GMW8 1640 aa21.03■□□□□ 0.96
LCMT1-201ENST00000380962 KIF21BO75037 1637 aa21.01■□□□□ 0.95
LCMT1-201ENST00000380962 CFTRP13569 1480 aa21.01■□□□□ 0.95
LCMT1-201ENST00000380962 RUSC2Q8N2Y8 1516 aa20.99■□□□□ 0.95
LCMT1-201ENST00000380962 CEP164Q9UPV0 1460 aa20.99■□□□□ 0.95
LCMT1-201ENST00000380962 CEP162Q5TB80 1403 aa20.98■□□□□ 0.95
LCMT1-201ENST00000380962 EHMT2Q96KQ7 1210 aa20.93■□□□□ 0.94
LCMT1-201ENST00000380962 PRDM2Q13029 1718 aa20.92■□□□□ 0.94
LCMT1-201ENST00000380962 CC2D2AQ9P2K1 1620 aa20.83■□□□□ 0.92
LCMT1-201ENST00000380962 CUX1P39880 1505 aa20.82■□□□□ 0.92
LCMT1-201ENST00000380962 ZEB1P37275 1124 aaPredicted RBP20.81■□□□□ 0.92
LCMT1-201ENST00000380962 UBTFP17480 764 aaKnown RBP20.8■□□□□ 0.92
LCMT1-201ENST00000380962 CADPSQ9ULU8 1353 aa20.8■□□□□ 0.92
LCMT1-201ENST00000380962 ERICH3Q5RHP9 1530 aa20.79■□□□□ 0.92
LCMT1-201ENST00000380962 PRXQ9BXM0 1461 aa20.73■□□□□ 0.91
LCMT1-201ENST00000380962 KIF27Q86VH2 1401 aa20.71■□□□□ 0.91
LCMT1-201ENST00000380962 RAPGEF2Q9Y4G8 1499 aa20.71■□□□□ 0.91
LCMT1-201ENST00000380962 CLIP1P30622 1438 aa20.68■□□□□ 0.9
LCMT1-201ENST00000380962 VPS8Q8N3P4 1428 aa20.62■□□□□ 0.89
LCMT1-201ENST00000380962 FANCD2Q9BXW9 1451 aa20.55■□□□□ 0.88
LCMT1-201ENST00000380962 DNAJC5Q9H3Z4 198 aa20.54■□□□□ 0.88
LCMT1-201ENST00000380962 PPARGC1BQ86YN6 1023 aaKnown RBP20.51■□□□□ 0.87
LCMT1-201ENST00000380962 LAMC3Q9Y6N6 1575 aa20.51■□□□□ 0.87
LCMT1-201ENST00000380962 FGD5Q6ZNL6 1462 aa20.5■□□□□ 0.87
LCMT1-201ENST00000380962 DNMBPQ6XZF7 1577 aa20.5■□□□□ 0.87
LCMT1-201ENST00000380962 CUX2O14529 1486 aa20.47■□□□□ 0.87
LCMT1-201ENST00000380962 IGF1RP08069 1367 aa20.44■□□□□ 0.86
LCMT1-201ENST00000380962 ARAP1Q96P48 1450 aa20.41■□□□□ 0.86
LCMT1-201ENST00000380962 ABCA10Q8WWZ4 1543 aa20.4■□□□□ 0.86
LCMT1-201ENST00000380962 TOPBP1Q92547 1522 aa20.4■□□□□ 0.86
LCMT1-201ENST00000380962 APLP2Q06481 763 aa20.38■□□□□ 0.85
LCMT1-201ENST00000380962 CARMIL1Q5VZK9 1371 aa20.35■□□□□ 0.85
LCMT1-201ENST00000380962 POLA1P09884 1462 aaPredicted RBP20.34■□□□□ 0.85
LCMT1-201ENST00000380962 PDS5BQ9NTI5 1447 aa20.32■□□□□ 0.84
LCMT1-201ENST00000380962 NESP48681 1621 aa20.32■□□□□ 0.84
LCMT1-201ENST00000380962 ARHGAP35Q9NRY4 1499 aa20.3■□□□□ 0.84
LCMT1-201ENST00000380962 CUL7Q14999 1698 aa20.28■□□□□ 0.84
LCMT1-201ENST00000380962 CCER1Q8TC90 406 aaPredicted RBP20.27■□□□□ 0.83
LCMT1-201ENST00000380962 WDR97A6NE52 1622 aa20.25■□□□□ 0.83
LCMT1-201ENST00000380962 URB2Q14146 1524 aaKnown RBP20.24■□□□□ 0.83
LCMT1-201ENST00000380962 MAP3K1Q13233 1512 aa20.24■□□□□ 0.83
LCMT1-201ENST00000380962 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.22■□□□□ 0.83
LCMT1-201ENST00000380962 RAD54L2Q9Y4B4 1467 aa20.22■□□□□ 0.83
LCMT1-201ENST00000380962 TTBK1Q5TCY1 1321 aaPredicted RBP20.22■□□□□ 0.83
LCMT1-201ENST00000380962 ABCA5Q8WWZ7 1642 aa20.17■□□□□ 0.82
LCMT1-201ENST00000380962 EFCAB5A4FU69 1503 aa20.16■□□□□ 0.82
LCMT1-201ENST00000380962 RANGAP1P46060 587 aaPredicted RBP20.16■□□□□ 0.82
LCMT1-201ENST00000380962 FHAD1B1AJZ9 1412 aa20.14■□□□□ 0.81
LCMT1-201ENST00000380962 RRBP1Q9P2E9 1410 aaKnown RBP20.12■□□□□ 0.81
LCMT1-201ENST00000380962 KIF21AQ7Z4S6 1674 aa20.1■□□□□ 0.81
LCMT1-201ENST00000380962 CTTNBP2Q8WZ74 1663 aa20.09■□□□□ 0.81
LCMT1-201ENST00000380962 GAPVD1Q14C86 1478 aa20.07■□□□□ 0.8
LCMT1-201ENST00000380962 TIAM1Q13009 1591 aa20.07■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms