RNA–Protein interactions for RNA: ENST00000380680.4

UBL3-201, Transcript of ubiquitin like 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UBL3, Length 4,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBL3-201ENST00000380680 NISCHQ9Y2I1 1504 aa32.98■■■□□ 2.87
UBL3-201ENST00000380680 DCAF8L2P0C7V8 631 aa31.58■■■□□ 2.65
UBL3-201ENST00000380680 SUPT5HO00267 1087 aaKnown RBP30.47■■■□□ 2.47
UBL3-201ENST00000380680 SHROOM4Q9ULL8 1493 aa30.42■■■□□ 2.46
UBL3-201ENST00000380680 EHMT2Q96KQ7 1210 aa28.87■■■□□ 2.21
UBL3-201ENST00000380680 FAM9AQ8IZU1 332 aaPredicted RBP28.53■■■□□ 2.16
UBL3-201ENST00000380680 PCGF6Q9BYE7 350 aa28.25■■■□□ 2.11
UBL3-201ENST00000380680 TRIM41Q8WV44 630 aa28.22■■■□□ 2.11
UBL3-201ENST00000380680 CHIC1Q5VXU3 224 aa27.96■■■□□ 2.07
UBL3-201ENST00000380680 TTBK1Q5TCY1 1321 aaPredicted RBP27.84■■■□□ 2.05
UBL3-201ENST00000380680 APLP2Q06481 763 aa27.76■■■□□ 2.03
UBL3-201ENST00000380680 ABCC9O60706 1549 aa27.67■■■□□ 2.02
UBL3-201ENST00000380680 LOC105371045A0A1W2PR82 267 aa27.66■■■□□ 2.02
UBL3-201ENST00000380680 RANGAP1P46060 587 aaPredicted RBP27.59■■■□□ 2.01
UBL3-201ENST00000380680 UBTFP17480 764 aaKnown RBP27.53■■■□□ 2
UBL3-201ENST00000380680 ZCCHC6Q5VYS8 1495 aaKnown RBP27.47■■□□□ 1.99
UBL3-201ENST00000380680 PPARGC1BQ86YN6 1023 aaKnown RBP27.39■■□□□ 1.98
UBL3-201ENST00000380680 CCER1Q8TC90 406 aaPredicted RBP27.27■■□□□ 1.96
UBL3-201ENST00000380680 TRIM26Q12899 539 aaPredicted RBP27.26■■□□□ 1.95
UBL3-201ENST00000380680 ZEB1P37275 1124 aaPredicted RBP27.25■■□□□ 1.95
UBL3-201ENST00000380680 CCDC180Q9P1Z9 1646 aa27.23■■□□□ 1.95
UBL3-201ENST00000380680 PABPN1Q86U42 306 aaKnown RBP eCLIP27.19■■□□□ 1.94
UBL3-201ENST00000380680 HRCP23327 699 aa27.12■■□□□ 1.93
UBL3-201ENST00000380680 ATP1B4Q9UN42 357 aaPredicted RBP27.01■■□□□ 1.91
UBL3-201ENST00000380680 SCRIBQ14160 1630 aa26.87■■□□□ 1.89
UBL3-201ENST00000380680 HNRNPUL2Q1KMD3 747 aaKnown RBP26.57■■□□□ 1.84
UBL3-201ENST00000380680 CENPBP07199 599 aaPredicted RBP26.54■■□□□ 1.84
UBL3-201ENST00000380680 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP26.5■■□□□ 1.83
UBL3-201ENST00000380680 ITGAEP38570 1179 aa26.49■■□□□ 1.83
UBL3-201ENST00000380680 PELP1Q8IZL8 1130 aaKnown RBP26.37■■□□□ 1.81
UBL3-201ENST00000380680 RSF1Q96T23 1441 aaPredicted RBP26.36■■□□□ 1.81
UBL3-201ENST00000380680 CSRNP3Q8WYN3 585 aa26.33■■□□□ 1.81
UBL3-201ENST00000380680 YTHDC1Q96MU7 727 aaKnown RBP26.32■■□□□ 1.8
UBL3-201ENST00000380680 MYO15BQ96JP2 1530 aa26.3■■□□□ 1.8
UBL3-201ENST00000380680 DCAF1Q9Y4B6 1507 aa26.28■■□□□ 1.8
UBL3-201ENST00000380680 NACADO15069 1562 aa26.14■■□□□ 1.77
UBL3-201ENST00000380680 RB1CC1Q8TDY2 1594 aa26.13■■□□□ 1.77
UBL3-201ENST00000380680 CECR2Q9BXF3 1484 aa25.97■■□□□ 1.75
UBL3-201ENST00000380680 DIEXFQ68CQ4 756 aaKnown RBP25.95■■□□□ 1.75
UBL3-201ENST00000380680 FAM50AQ14320 339 aaKnown RBP25.93■■□□□ 1.74
UBL3-201ENST00000380680 P3H3Q8IVL6 736 aa25.81■■□□□ 1.72
UBL3-201ENST00000380680 BAZ1AQ9NRL2 1556 aaPredicted RBP25.69■■□□□ 1.7
UBL3-201ENST00000380680 NEFLP07196 543 aa25.66■■□□□ 1.7
UBL3-201ENST00000380680 MROH2BQ7Z745 1585 aa25.65■■□□□ 1.7
UBL3-201ENST00000380680 NEUROD1Q13562 356 aa25.64■■□□□ 1.7
UBL3-201ENST00000380680 POLR3GLQ9BT43 218 aa25.57■■□□□ 1.68
UBL3-201ENST00000380680 ZNF316A6NFI3 1004 aaPredicted RBP25.56■■□□□ 1.68
UBL3-201ENST00000380680 WRNQ14191 1432 aaPredicted RBP eCLIP25.56■■□□□ 1.68
UBL3-201ENST00000380680 FBLN2P98095 1184 aa25.54■■□□□ 1.68
UBL3-201ENST00000380680 BAZ1BQ9UIG0 1483 aaKnown RBP25.52■■□□□ 1.68
UBL3-201ENST00000380680 TRIM52Q96A61 297 aa25.52■■□□□ 1.68
UBL3-201ENST00000380680 MYT1LQ9UL68 1186 aa25.48■■□□□ 1.67
UBL3-201ENST00000380680 EEA1Q15075 1411 aa25.48■■□□□ 1.67
UBL3-201ENST00000380680 CEP162Q5TB80 1403 aa25.48■■□□□ 1.67
UBL3-201ENST00000380680 ARID3CA6NKF2 412 aa25.48■■□□□ 1.67
UBL3-201ENST00000380680 CLIP1P30622 1438 aa25.47■■□□□ 1.67
UBL3-201ENST00000380680 CNGB1Q14028 1251 aaPredicted RBP25.46■■□□□ 1.67
UBL3-201ENST00000380680 GOLGA3Q08378 1498 aa25.39■■□□□ 1.65
UBL3-201ENST00000380680 TNIKQ9UKE5 1360 aa25.35■■□□□ 1.65
UBL3-201ENST00000380680 CCDC88BA6NC98 1476 aa25.34■■□□□ 1.65
UBL3-201ENST00000380680 SOGA1O94964 1423 aa25.32■■□□□ 1.64
UBL3-201ENST00000380680 WIZO95785 1651 aa25.29■■□□□ 1.64
UBL3-201ENST00000380680 GTF3C3Q9Y5Q9 886 aa25.27■■□□□ 1.64
UBL3-201ENST00000380680 ABCC8Q09428 1581 aa25.23■■□□□ 1.63
UBL3-201ENST00000380680 ERICH6Q7L0X2 663 aa25.21■■□□□ 1.63
UBL3-201ENST00000380680 CEP164Q9UPV0 1460 aa25.2■■□□□ 1.63
UBL3-201ENST00000380680 KIF27Q86VH2 1401 aa25.15■■□□□ 1.62
UBL3-201ENST00000380680 ZNF326Q5BKZ1 582 aaKnown RBP25.14■■□□□ 1.61
UBL3-201ENST00000380680 ACIN1Q9UKV3 1341 aaKnown RBP25.13■■□□□ 1.61
UBL3-201ENST00000380680 ZNF777Q9ULD5 760 aaPredicted RBP25.1■■□□□ 1.61
UBL3-201ENST00000380680 ANP32CO43423 234 aa25.08■■□□□ 1.61
UBL3-201ENST00000380680 CDK11AQ9UQ88 783 aaPredicted RBP25.08■■□□□ 1.61
UBL3-201ENST00000380680 TOP2AP11388 1531 aaKnown RBP25.06■■□□□ 1.6
UBL3-201ENST00000380680 CHIC2Q9UKJ5 165 aa25■■□□□ 1.59
UBL3-201ENST00000380680 MTUS2Q5JR59 1369 aa25■■□□□ 1.59
UBL3-201ENST00000380680 SMARCA2P51531 1590 aa24.95■■□□□ 1.58
UBL3-201ENST00000380680 TONSLQ96HA7 1378 aa24.93■■□□□ 1.58
UBL3-201ENST00000380680 SMARCA4P51532 1647 aa24.92■■□□□ 1.58
UBL3-201ENST00000380680 BCANQ96GW7 911 aa24.89■■□□□ 1.58
UBL3-201ENST00000380680 DDX10Q13206 875 aaKnown RBP24.89■■□□□ 1.57
UBL3-201ENST00000380680 ATAD2BQ9ULI0 1458 aa24.86■■□□□ 1.57
UBL3-201ENST00000380680 CUX2O14529 1486 aa24.85■■□□□ 1.57
UBL3-201ENST00000380680 MIER1Q8N108 512 aa24.84■■□□□ 1.57
UBL3-201ENST00000380680 CHMP7Q8WUX9 453 aaPredicted RBP24.84■■□□□ 1.57
UBL3-201ENST00000380680 CARMIL1Q5VZK9 1371 aa24.82■■□□□ 1.56
UBL3-201ENST00000380680 SLC4A1APQ9BWU0 796 aaKnown RBP24.79■■□□□ 1.56
UBL3-201ENST00000380680 VPS8Q8N3P4 1428 aa24.78■■□□□ 1.56
UBL3-201ENST00000380680 RUSC2Q8N2Y8 1516 aa24.76■■□□□ 1.56
UBL3-201ENST00000380680 HIRIP3Q9BW71 556 aaPredicted RBP24.75■■□□□ 1.55
UBL3-201ENST00000380680 RRP7BPQ9NSQ0 103 aa24.75■■□□□ 1.55
UBL3-201ENST00000380680 KANK4Q5T7N3 995 aaPredicted RBP24.71■■□□□ 1.55
UBL3-201ENST00000380680 SCAF1Q9H7N4 1312 aaKnown RBP24.65■■□□□ 1.54
UBL3-201ENST00000380680 CCNB3Q8WWL7 1395 aa24.65■■□□□ 1.54
UBL3-201ENST00000380680 RAPGEF2Q9Y4G8 1499 aa24.61■■□□□ 1.53
UBL3-201ENST00000380680 TSPY4P0CV99 314 aa24.6■■□□□ 1.53
UBL3-201ENST00000380680 TSPY10P0CW01 314 aa24.6■■□□□ 1.53
UBL3-201ENST00000380680 CADPSQ9ULU8 1353 aa24.59■■□□□ 1.53
UBL3-201ENST00000380680 FHAD1B1AJZ9 1412 aa24.58■■□□□ 1.53
UBL3-201ENST00000380680 SIN3AQ96ST3 1273 aa24.57■■□□□ 1.52
UBL3-201ENST00000380680 MYT1Q01538 1121 aa24.53■■□□□ 1.52
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms