RNA–Protein interactions for RNA: ENST00000375608.7

MCF2L-204, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 5 BASIC

Gene MCF2L, Length 3,648 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-204ENST00000375608 NISCHQ9Y2I1 1504 aa25.31■■□□□ 1.64
MCF2L-204ENST00000375608 SHROOM4Q9ULL8 1493 aa23.6■■□□□ 1.37
MCF2L-204ENST00000375608 SUPT5HO00267 1087 aaKnown RBP23.59■■□□□ 1.37
MCF2L-204ENST00000375608 DCAF8L2P0C7V8 631 aa23.16■■□□□ 1.3
MCF2L-204ENST00000375608 PCGF6Q9BYE7 350 aa22.89■■□□□ 1.26
MCF2L-204ENST00000375608 HRCP23327 699 aa22.6■■□□□ 1.21
MCF2L-204ENST00000375608 PPARGC1BQ86YN6 1023 aaKnown RBP22.59■■□□□ 1.21
MCF2L-204ENST00000375608 EHMT2Q96KQ7 1210 aa22.37■■□□□ 1.17
MCF2L-204ENST00000375608 CHIC1Q5VXU3 224 aa22.35■■□□□ 1.17
MCF2L-204ENST00000375608 LOC105371045A0A1W2PR82 267 aa22.24■■□□□ 1.15
MCF2L-204ENST00000375608 FAM9AQ8IZU1 332 aaPredicted RBP22.05■■□□□ 1.12
MCF2L-204ENST00000375608 MYO15BQ96JP2 1530 aa21.96■■□□□ 1.11
MCF2L-204ENST00000375608 TRIM26Q12899 539 aaPredicted RBP21.78■■□□□ 1.08
MCF2L-204ENST00000375608 TTBK1Q5TCY1 1321 aaPredicted RBP21.67■■□□□ 1.06
MCF2L-204ENST00000375608 TRIM41Q8WV44 630 aa21.59■■□□□ 1.05
MCF2L-204ENST00000375608 ZEB1P37275 1124 aaPredicted RBP21.5■■□□□ 1.03
MCF2L-204ENST00000375608 PELP1Q8IZL8 1130 aaKnown RBP21.41■■□□□ 1.02
MCF2L-204ENST00000375608 CCER1Q8TC90 406 aaPredicted RBP21.38■■□□□ 1.01
MCF2L-204ENST00000375608 ZCCHC6Q5VYS8 1495 aaKnown RBP21.3■■□□□ 1
MCF2L-204ENST00000375608 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.3■■□□□ 1
MCF2L-204ENST00000375608 SCAF1Q9H7N4 1312 aaKnown RBP21.29■■□□□ 1
MCF2L-204ENST00000375608 DCAF1Q9Y4B6 1507 aa21.24■□□□□ 0.99
MCF2L-204ENST00000375608 YTHDC1Q96MU7 727 aaKnown RBP21.19■□□□□ 0.98
MCF2L-204ENST00000375608 CENPBP07199 599 aaPredicted RBP21.09■□□□□ 0.97
MCF2L-204ENST00000375608 GTF3C3Q9Y5Q9 886 aa21.03■□□□□ 0.96
MCF2L-204ENST00000375608 DIEXFQ68CQ4 756 aaKnown RBP20.98■□□□□ 0.95
MCF2L-204ENST00000375608 NEUROD1Q13562 356 aa20.97■□□□□ 0.95
MCF2L-204ENST00000375608 ACIN1Q9UKV3 1341 aaKnown RBP20.93■□□□□ 0.94
MCF2L-204ENST00000375608 RANGAP1P46060 587 aaPredicted RBP20.88■□□□□ 0.93
MCF2L-204ENST00000375608 UBTFP17480 764 aaKnown RBP20.8■□□□□ 0.92
MCF2L-204ENST00000375608 CCDC180Q9P1Z9 1646 aa20.75■□□□□ 0.91
MCF2L-204ENST00000375608 HNRNPUL2Q1KMD3 747 aaKnown RBP20.71■□□□□ 0.91
MCF2L-204ENST00000375608 ABCC9O60706 1549 aa20.68■□□□□ 0.9
MCF2L-204ENST00000375608 APLP2Q06481 763 aa20.56■□□□□ 0.88
MCF2L-204ENST00000375608 RSF1Q96T23 1441 aaPredicted RBP20.52■□□□□ 0.87
MCF2L-204ENST00000375608 ZNF316A6NFI3 1004 aaPredicted RBP20.48■□□□□ 0.87
MCF2L-204ENST00000375608 SCRIBQ14160 1630 aa20.45■□□□□ 0.87
MCF2L-204ENST00000375608 MYT1Q01538 1121 aa20.45■□□□□ 0.86
MCF2L-204ENST00000375608 MIER1Q8N108 512 aa20.38■□□□□ 0.85
MCF2L-204ENST00000375608 RB1CC1Q8TDY2 1594 aa20.28■□□□□ 0.84
MCF2L-204ENST00000375608 ITGAEP38570 1179 aa20.26■□□□□ 0.83
MCF2L-204ENST00000375608 BCANQ96GW7 911 aa20.19■□□□□ 0.82
MCF2L-204ENST00000375608 PABPN1Q86U42 306 aaKnown RBP eCLIP20.17■□□□□ 0.821e-6■■■□□ 15.2
MCF2L-204ENST00000375608 CSRNP3Q8WYN3 585 aa20.16■□□□□ 0.82
MCF2L-204ENST00000375608 CECR2Q9BXF3 1484 aa20.15■□□□□ 0.82
MCF2L-204ENST00000375608 CEP162Q5TB80 1403 aa20.04■□□□□ 0.8
MCF2L-204ENST00000375608 ATP1B4Q9UN42 357 aaPredicted RBP19.98■□□□□ 0.79
MCF2L-204ENST00000375608 SOGA1O94964 1423 aa19.93■□□□□ 0.78
MCF2L-204ENST00000375608 MROH2BQ7Z745 1585 aa19.92■□□□□ 0.78
MCF2L-204ENST00000375608 NEFLP07196 543 aa19.87■□□□□ 0.77
MCF2L-204ENST00000375608 CCDC88BA6NC98 1476 aa19.86■□□□□ 0.77
MCF2L-204ENST00000375608 ABCC8Q09428 1581 aa19.86■□□□□ 0.77
MCF2L-204ENST00000375608 SUPT16HQ9Y5B9 1047 aaKnown RBP19.81■□□□□ 0.76
MCF2L-204ENST00000375608 TNIKQ9UKE5 1360 aa19.77■□□□□ 0.76
MCF2L-204ENST00000375608 WIZO95785 1651 aa19.76■□□□□ 0.75
MCF2L-204ENST00000375608 FKBP8Q14318 412 aa19.76■□□□□ 0.75
MCF2L-204ENST00000375608 HIRIP3Q9BW71 556 aaPredicted RBP19.75■□□□□ 0.75
MCF2L-204ENST00000375608 RUSC2Q8N2Y8 1516 aa19.73■□□□□ 0.75
MCF2L-204ENST00000375608 ERICH6Q7L0X2 663 aa19.72■□□□□ 0.75
MCF2L-204ENST00000375608 DDX10Q13206 875 aaKnown RBP19.71■□□□□ 0.75
MCF2L-204ENST00000375608 CLIP1P30622 1438 aa19.69■□□□□ 0.74
MCF2L-204ENST00000375608 TRIM52Q96A61 297 aa19.67■□□□□ 0.74
MCF2L-204ENST00000375608 KCNH8Q96L42 1107 aa19.66■□□□□ 0.74
MCF2L-204ENST00000375608 FAM50AQ14320 339 aaKnown RBP19.65■□□□□ 0.74
MCF2L-204ENST00000375608 CNGB1Q14028 1251 aaPredicted RBP19.63■□□□□ 0.73
MCF2L-204ENST00000375608 GOLGA3Q08378 1498 aa19.6■□□□□ 0.73
MCF2L-204ENST00000375608 TSHZ2Q9NRE2 1034 aa19.59■□□□□ 0.73
MCF2L-204ENST00000375608 WRNQ14191 1432 aaPredicted RBP eCLIP19.58■□□□□ 0.72
MCF2L-204ENST00000375608 ANP32EQ9BTT0 268 aa19.56■□□□□ 0.72
MCF2L-204ENST00000375608 NACADO15069 1562 aa19.54■□□□□ 0.72
MCF2L-204ENST00000375608 P3H3Q8IVL6 736 aa19.53■□□□□ 0.72
MCF2L-204ENST00000375608 IRX6P78412 446 aaPredicted RBP19.52■□□□□ 0.72
MCF2L-204ENST00000375608 KANK4Q5T7N3 995 aaPredicted RBP19.51■□□□□ 0.71
MCF2L-204ENST00000375608 ANP32CO43423 234 aa19.46■□□□□ 0.71
MCF2L-204ENST00000375608 SIN3AQ96ST3 1273 aa19.46■□□□□ 0.71
MCF2L-204ENST00000375608 EEA1Q15075 1411 aa19.45■□□□□ 0.7
MCF2L-204ENST00000375608 CLSPNQ9HAW4 1339 aa19.43■□□□□ 0.7
MCF2L-204ENST00000375608 BAZ1AQ9NRL2 1556 aaPredicted RBP19.41■□□□□ 0.7
MCF2L-204ENST00000375608 BCL11AQ9H165 835 aa19.4■□□□□ 0.7
MCF2L-204ENST00000375608 CEP164Q9UPV0 1460 aa19.38■□□□□ 0.69
MCF2L-204ENST00000375608 VPS8Q8N3P4 1428 aa19.37■□□□□ 0.69
MCF2L-204ENST00000375608 POLR3GLQ9BT43 218 aa19.35■□□□□ 0.69
MCF2L-204ENST00000375608 DHX57Q6P158 1386 aaKnown RBP19.34■□□□□ 0.69
MCF2L-204ENST00000375608 HNRNPUQ00839 825 aaKnown RBP eCLIP19.33■□□□□ 0.69
MCF2L-204ENST00000375608 RBM19Q9Y4C8 960 aaKnown RBP19.31■□□□□ 0.68
MCF2L-204ENST00000375608 CDK11AQ9UQ88 783 aaPredicted RBP19.29■□□□□ 0.68
MCF2L-204ENST00000375608 RAPGEF2Q9Y4G8 1499 aa19.29■□□□□ 0.68
MCF2L-204ENST00000375608 SENP3-EIF4A1A0A087X0R7 540 aa19.25■□□□□ 0.67
MCF2L-204ENST00000375608 TOP2AP11388 1531 aaKnown RBP19.22■□□□□ 0.67
MCF2L-204ENST00000375608 CCNB3Q8WWL7 1395 aa19.17■□□□□ 0.66
MCF2L-204ENST00000375608 FAM9BQ8IZU0 186 aa19.17■□□□□ 0.66
MCF2L-204ENST00000375608 SMARCA2P51531 1590 aa19.16■□□□□ 0.66
MCF2L-204ENST00000375608 RAB3GAP2Q9H2M9 1393 aa19.13■□□□□ 0.65
MCF2L-204ENST00000375608 NBR1Q14596 966 aa19.13■□□□□ 0.65
MCF2L-204ENST00000375608 TONSLQ96HA7 1378 aa19.12■□□□□ 0.65
MCF2L-204ENST00000375608 ARID3CA6NKF2 412 aa19.12■□□□□ 0.65
MCF2L-204ENST00000375608 CHIC2Q9UKJ5 165 aa19.06■□□□□ 0.64
MCF2L-204ENST00000375608 SMARCA4P51532 1647 aa19.05■□□□□ 0.64
MCF2L-204ENST00000375608 ZNF326Q5BKZ1 582 aaKnown RBP19.02■□□□□ 0.64
MCF2L-204ENST00000375608 B4GALNT3Q6L9W6 998 aa19.02■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 93.9 ms