RNA–Protein interactions for RNA: ENST00000375597.8

MCF2L-202, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 1 (best) BASIC

Gene MCF2L, Length 3,413 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-202ENST00000375597 NISCHQ9Y2I1 1504 aa22.61■■□□□ 1.21
MCF2L-202ENST00000375597 SHROOM4Q9ULL8 1493 aa20.85■□□□□ 0.93
MCF2L-202ENST00000375597 SUPT5HO00267 1087 aaKnown RBP20.65■□□□□ 0.9
MCF2L-202ENST00000375597 DCAF8L2P0C7V8 631 aa20.42■□□□□ 0.86
MCF2L-202ENST00000375597 PCGF6Q9BYE7 350 aa19.83■□□□□ 0.77
MCF2L-202ENST00000375597 EHMT2Q96KQ7 1210 aa19.74■□□□□ 0.75
MCF2L-202ENST00000375597 PPARGC1BQ86YN6 1023 aaKnown RBP19.69■□□□□ 0.74
MCF2L-202ENST00000375597 LOC105371045A0A1W2PR82 267 aa19.5■□□□□ 0.71
MCF2L-202ENST00000375597 CHIC1Q5VXU3 224 aa19.48■□□□□ 0.71
MCF2L-202ENST00000375597 HRCP23327 699 aa19.41■□□□□ 0.7
MCF2L-202ENST00000375597 MYO15BQ96JP2 1530 aa19.35■□□□□ 0.69
MCF2L-202ENST00000375597 FAM9AQ8IZU1 332 aaPredicted RBP19.34■□□□□ 0.69
MCF2L-202ENST00000375597 CCDC180Q9P1Z9 1646 aa19.28■□□□□ 0.68
MCF2L-202ENST00000375597 ZCCHC6Q5VYS8 1495 aaKnown RBP19.18■□□□□ 0.66
MCF2L-202ENST00000375597 TTBK1Q5TCY1 1321 aaPredicted RBP19.06■□□□□ 0.64
MCF2L-202ENST00000375597 TRIM41Q8WV44 630 aa18.79■□□□□ 0.6
MCF2L-202ENST00000375597 TRIM26Q12899 539 aaPredicted RBP18.74■□□□□ 0.59
MCF2L-202ENST00000375597 DCAF1Q9Y4B6 1507 aa18.63■□□□□ 0.57
MCF2L-202ENST00000375597 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.55■□□□□ 0.56
MCF2L-202ENST00000375597 CCER1Q8TC90 406 aaPredicted RBP18.45■□□□□ 0.54
MCF2L-202ENST00000375597 RANGAP1P46060 587 aaPredicted RBP18.41■□□□□ 0.54
MCF2L-202ENST00000375597 ABCC9O60706 1549 aa18.39■□□□□ 0.53
MCF2L-202ENST00000375597 SCAF1Q9H7N4 1312 aaKnown RBP18.34■□□□□ 0.53
MCF2L-202ENST00000375597 YTHDC1Q96MU7 727 aaKnown RBP18.34■□□□□ 0.53
MCF2L-202ENST00000375597 ZEB1P37275 1124 aaPredicted RBP18.24■□□□□ 0.51
MCF2L-202ENST00000375597 SCRIBQ14160 1630 aa18.19■□□□□ 0.5
MCF2L-202ENST00000375597 UBTFP17480 764 aaKnown RBP18.1■□□□□ 0.49
MCF2L-202ENST00000375597 NEUROD1Q13562 356 aa18.1■□□□□ 0.49
MCF2L-202ENST00000375597 RSF1Q96T23 1441 aaPredicted RBP18.07■□□□□ 0.48
MCF2L-202ENST00000375597 GTF3C3Q9Y5Q9 886 aa18.06■□□□□ 0.48
MCF2L-202ENST00000375597 HNRNPUL2Q1KMD3 747 aaKnown RBP18.05■□□□□ 0.48
MCF2L-202ENST00000375597 DIEXFQ68CQ4 756 aaKnown RBP18.04■□□□□ 0.48
MCF2L-202ENST00000375597 RB1CC1Q8TDY2 1594 aa17.97■□□□□ 0.47
MCF2L-202ENST00000375597 ACIN1Q9UKV3 1341 aaKnown RBP17.91■□□□□ 0.46
MCF2L-202ENST00000375597 CECR2Q9BXF3 1484 aa17.9■□□□□ 0.46
MCF2L-202ENST00000375597 CENPBP07199 599 aaPredicted RBP17.87■□□□□ 0.45
MCF2L-202ENST00000375597 NACADO15069 1562 aa17.87■□□□□ 0.45
MCF2L-202ENST00000375597 PABPN1Q86U42 306 aaKnown RBP eCLIP17.82■□□□□ 0.442e-6■■■□□ 18.6
MCF2L-202ENST00000375597 PELP1Q8IZL8 1130 aaKnown RBP17.79■□□□□ 0.44
MCF2L-202ENST00000375597 ITGAEP38570 1179 aa17.73■□□□□ 0.43
MCF2L-202ENST00000375597 APLP2Q06481 763 aa17.69■□□□□ 0.42
MCF2L-202ENST00000375597 MROH2BQ7Z745 1585 aa17.66■□□□□ 0.42
MCF2L-202ENST00000375597 MIER1Q8N108 512 aa17.65■□□□□ 0.42
MCF2L-202ENST00000375597 ZNF316A6NFI3 1004 aaPredicted RBP17.6■□□□□ 0.41
MCF2L-202ENST00000375597 ABCC8Q09428 1581 aa17.6■□□□□ 0.41
MCF2L-202ENST00000375597 SOGA1O94964 1423 aa17.58■□□□□ 0.4
MCF2L-202ENST00000375597 CSRNP3Q8WYN3 585 aa17.56■□□□□ 0.4
MCF2L-202ENST00000375597 WIZO95785 1651 aa17.55■□□□□ 0.4
MCF2L-202ENST00000375597 CCDC88BA6NC98 1476 aa17.53■□□□□ 0.4
MCF2L-202ENST00000375597 CEP162Q5TB80 1403 aa17.51■□□□□ 0.39
MCF2L-202ENST00000375597 ATP1B4Q9UN42 357 aaPredicted RBP17.49■□□□□ 0.39
MCF2L-202ENST00000375597 RUSC2Q8N2Y8 1516 aa17.48■□□□□ 0.39
MCF2L-202ENST00000375597 BCANQ96GW7 911 aa17.47■□□□□ 0.39
MCF2L-202ENST00000375597 BAZ1AQ9NRL2 1556 aaPredicted RBP17.45■□□□□ 0.38
MCF2L-202ENST00000375597 EIF4G1Q04637 1599 aaKnown RBP17.39■□□□□ 0.37
MCF2L-202ENST00000375597 HIRIP3Q9BW71 556 aaPredicted RBP17.33■□□□□ 0.36
MCF2L-202ENST00000375597 TOP2AP11388 1531 aaKnown RBP17.26■□□□□ 0.35
MCF2L-202ENST00000375597 UNC13AQ9UPW8 1703 aa17.25■□□□□ 0.35
MCF2L-202ENST00000375597 KCNH8Q96L42 1107 aa17.22■□□□□ 0.35
MCF2L-202ENST00000375597 SMARCA4P51532 1647 aa17.22■□□□□ 0.35
MCF2L-202ENST00000375597 P3H3Q8IVL6 736 aa17.22■□□□□ 0.35
MCF2L-202ENST00000375597 CNGB1Q14028 1251 aaPredicted RBP17.2■□□□□ 0.34
MCF2L-202ENST00000375597 TNIKQ9UKE5 1360 aa17.19■□□□□ 0.34
MCF2L-202ENST00000375597 CLIP1P30622 1438 aa17.18■□□□□ 0.34
MCF2L-202ENST00000375597 BICRAQ9NZM4 1560 aa17.18■□□□□ 0.34
MCF2L-202ENST00000375597 KANK4Q5T7N3 995 aaPredicted RBP17.15■□□□□ 0.34
MCF2L-202ENST00000375597 SMARCA2P51531 1590 aa17.15■□□□□ 0.34
MCF2L-202ENST00000375597 FAM50AQ14320 339 aaKnown RBP17.14■□□□□ 0.33
MCF2L-202ENST00000375597 WRNQ14191 1432 aaPredicted RBP eCLIP17.1■□□□□ 0.33
MCF2L-202ENST00000375597 DDX10Q13206 875 aaKnown RBP17.09■□□□□ 0.33
MCF2L-202ENST00000375597 GOLGA3Q08378 1498 aa17.08■□□□□ 0.32
MCF2L-202ENST00000375597 TRIM52Q96A61 297 aa17.06■□□□□ 0.32
MCF2L-202ENST00000375597 SUPT16HQ9Y5B9 1047 aaKnown RBP17.04■□□□□ 0.32
MCF2L-202ENST00000375597 SIN3AQ96ST3 1273 aa17.02■□□□□ 0.32
MCF2L-202ENST00000375597 FKBP8Q14318 412 aa17.01■□□□□ 0.31
MCF2L-202ENST00000375597 RAPGEF2Q9Y4G8 1499 aa17■□□□□ 0.31
MCF2L-202ENST00000375597 EEA1Q15075 1411 aa16.99■□□□□ 0.31
MCF2L-202ENST00000375597 IRX6P78412 446 aaPredicted RBP16.98■□□□□ 0.31
MCF2L-202ENST00000375597 SENP3-EIF4A1A0A087X0R7 540 aa16.98■□□□□ 0.31
MCF2L-202ENST00000375597 ARID3CA6NKF2 412 aa16.95■□□□□ 0.3
MCF2L-202ENST00000375597 PEG3Q9GZU2 1588 aa16.92■□□□□ 0.3
MCF2L-202ENST00000375597 CEP164Q9UPV0 1460 aa16.88■□□□□ 0.29
MCF2L-202ENST00000375597 VPS8Q8N3P4 1428 aa16.88■□□□□ 0.29
MCF2L-202ENST00000375597 ATAD2BQ9ULI0 1458 aa16.87■□□□□ 0.29
MCF2L-202ENST00000375597 NEFLP07196 543 aa16.87■□□□□ 0.29
MCF2L-202ENST00000375597 DHX57Q6P158 1386 aaKnown RBP16.84■□□□□ 0.29
MCF2L-202ENST00000375597 BAZ1BQ9UIG0 1483 aaKnown RBP16.84■□□□□ 0.29
MCF2L-202ENST00000375597 POLR3GLQ9BT43 218 aa16.83■□□□□ 0.29
MCF2L-202ENST00000375597 TSHZ2Q9NRE2 1034 aa16.83■□□□□ 0.29
MCF2L-202ENST00000375597 MYT1Q01538 1121 aa16.79■□□□□ 0.28
MCF2L-202ENST00000375597 SYNJ1O43426 1573 aa16.79■□□□□ 0.28
MCF2L-202ENST00000375597 KIF21BO75037 1637 aa16.78■□□□□ 0.28
MCF2L-202ENST00000375597 CHIC2Q9UKJ5 165 aa16.73■□□□□ 0.27
MCF2L-202ENST00000375597 ANP32CO43423 234 aa16.7■□□□□ 0.26
MCF2L-202ENST00000375597 RAB3GAP2Q9H2M9 1393 aa16.69■□□□□ 0.26
MCF2L-202ENST00000375597 HNRNPUQ00839 825 aaKnown RBP eCLIP16.68■□□□□ 0.26
MCF2L-202ENST00000375597 CCNB3Q8WWL7 1395 aa16.68■□□□□ 0.26
MCF2L-202ENST00000375597 ERICH6Q7L0X2 663 aa16.66■□□□□ 0.26
MCF2L-202ENST00000375597 ARAP1Q96P48 1450 aa16.63■□□□□ 0.25
MCF2L-202ENST00000375597 ZNF326Q5BKZ1 582 aaKnown RBP16.61■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms