RNA–Protein interactions for RNA: ENST00000375340.10

SMC1A-202, Transcript of structural maintenance of chromosomes 1A, humanhuman

TSL 1 (best) BASIC

Gene SMC1A, Length 9,930 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1A-202ENST00000375340 NISCHQ9Y2I1 1504 aa11.65□□□□□ -0.54
SMC1A-202ENST00000375340 DCAF8L2P0C7V8 631 aa11.25□□□□□ -0.61
SMC1A-202ENST00000375340 SHROOM4Q9ULL8 1493 aa11.13□□□□□ -0.63
SMC1A-202ENST00000375340 SUPT5HO00267 1087 aaKnown RBP11.08□□□□□ -0.64
SMC1A-202ENST00000375340 EHMT2Q96KQ7 1210 aa10.74□□□□□ -0.69
SMC1A-202ENST00000375340 PCGF6Q9BYE7 350 aa10.56□□□□□ -0.72
SMC1A-202ENST00000375340 FAM9AQ8IZU1 332 aaPredicted RBP10.42□□□□□ -0.74
SMC1A-202ENST00000375340 TTBK1Q5TCY1 1321 aaPredicted RBP10.4□□□□□ -0.74
SMC1A-202ENST00000375340 PPARGC1BQ86YN6 1023 aaKnown RBP10.19□□□□□ -0.78
SMC1A-202ENST00000375340 HRCP23327 699 aa10.19□□□□□ -0.78
SMC1A-202ENST00000375340 TRIM41Q8WV44 630 aa10.18□□□□□ -0.78
SMC1A-202ENST00000375340 LOC105371045A0A1W2PR82 267 aa10.14□□□□□ -0.79
SMC1A-202ENST00000375340 RANGAP1P46060 587 aaPredicted RBP10.13□□□□□ -0.79
SMC1A-202ENST00000375340 CCER1Q8TC90 406 aaPredicted RBP10.11□□□□□ -0.79
SMC1A-202ENST00000375340 CHIC1Q5VXU3 224 aa10.1□□□□□ -0.79
SMC1A-202ENST00000375340 ZEB1P37275 1124 aaPredicted RBP10.09□□□□□ -0.79
SMC1A-202ENST00000375340 YTHDC1Q96MU7 727 aaKnown RBP10.06□□□□□ -0.8
SMC1A-202ENST00000375340 APLP2Q06481 763 aa10.06□□□□□ -0.8
SMC1A-202ENST00000375340 TRIM26Q12899 539 aaPredicted RBP10.05□□□□□ -0.8
SMC1A-202ENST00000375340 CENPBP07199 599 aaPredicted RBP9.99□□□□□ -0.81
SMC1A-202ENST00000375340 PELP1Q8IZL8 1130 aaKnown RBP9.98□□□□□ -0.81
SMC1A-202ENST00000375340 UBTFP17480 764 aaKnown RBP9.94□□□□□ -0.82
SMC1A-202ENST00000375340 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP9.85□□□□□ -0.83
SMC1A-202ENST00000375340 MYO15BQ96JP2 1530 aa9.85□□□□□ -0.83
SMC1A-202ENST00000375340 ATP1B4Q9UN42 357 aaPredicted RBP9.82□□□□□ -0.84
SMC1A-202ENST00000375340 ZCCHC6Q5VYS8 1495 aaKnown RBP9.76□□□□□ -0.85
SMC1A-202ENST00000375340 SCRIBQ14160 1630 aa9.76□□□□□ -0.85
SMC1A-202ENST00000375340 HNRNPUL2Q1KMD3 747 aaKnown RBP9.76□□□□□ -0.85
SMC1A-202ENST00000375340 DIEXFQ68CQ4 756 aaKnown RBP9.71□□□□□ -0.86
SMC1A-202ENST00000375340 ITGAEP38570 1179 aa9.71□□□□□ -0.86
SMC1A-202ENST00000375340 CCDC180Q9P1Z9 1646 aa9.7□□□□□ -0.86
SMC1A-202ENST00000375340 ERICH6Q7L0X2 663 aa9.7□□□□□ -0.86
SMC1A-202ENST00000375340 ABCC9O60706 1549 aa9.67□□□□□ -0.86
SMC1A-202ENST00000375340 DCAF1Q9Y4B6 1507 aa9.65□□□□□ -0.86
SMC1A-202ENST00000375340 GTF3C3Q9Y5Q9 886 aa9.64□□□□□ -0.87
SMC1A-202ENST00000375340 NEFLP07196 543 aa9.62□□□□□ -0.87
SMC1A-202ENST00000375340 MYT1Q01538 1121 aa9.58□□□□□ -0.88
SMC1A-202ENST00000375340 PABPN1Q86U42 306 aaKnown RBP eCLIP9.54□□□□□ -0.88
SMC1A-202ENST00000375340 ACIN1Q9UKV3 1341 aaKnown RBP9.52□□□□□ -0.89
SMC1A-202ENST00000375340 BCANQ96GW7 911 aa9.51□□□□□ -0.89
SMC1A-202ENST00000375340 CNGB1Q14028 1251 aaPredicted RBP9.5□□□□□ -0.89
SMC1A-202ENST00000375340 SCAF1Q9H7N4 1312 aaKnown RBP9.5□□□□□ -0.89
SMC1A-202ENST00000375340 POLR3GLQ9BT43 218 aa9.48□□□□□ -0.89
SMC1A-202ENST00000375340 ZNF316A6NFI3 1004 aaPredicted RBP9.46□□□□□ -0.89
SMC1A-202ENST00000375340 NEUROD1Q13562 356 aa9.45□□□□□ -0.9
SMC1A-202ENST00000375340 FAM50AQ14320 339 aaKnown RBP9.45□□□□□ -0.9
SMC1A-202ENST00000375340 RB1CC1Q8TDY2 1594 aa9.36□□□□□ -0.91
SMC1A-202ENST00000375340 RSF1Q96T23 1441 aaPredicted RBP9.34□□□□□ -0.91
SMC1A-202ENST00000375340 CSRNP3Q8WYN3 585 aa9.33□□□□□ -0.92
SMC1A-202ENST00000375340 P3H3Q8IVL6 736 aa9.3□□□□□ -0.92
SMC1A-202ENST00000375340 TRIM52Q96A61 297 aa9.29□□□□□ -0.92
SMC1A-202ENST00000375340 MIER1Q8N108 512 aa9.28□□□□□ -0.92
SMC1A-202ENST00000375340 ANP32CO43423 234 aa9.26□□□□□ -0.93
SMC1A-202ENST00000375340 CEP162Q5TB80 1403 aa9.26□□□□□ -0.93
SMC1A-202ENST00000375340 ARID3CA6NKF2 412 aa9.24□□□□□ -0.93
SMC1A-202ENST00000375340 ZNF326Q5BKZ1 582 aaKnown RBP9.22□□□□□ -0.93
SMC1A-202ENST00000375340 ABCC8Q09428 1581 aa9.22□□□□□ -0.93
SMC1A-202ENST00000375340 FKBP8Q14318 412 aa9.21□□□□□ -0.93
SMC1A-202ENST00000375340 DAXXQ9UER7 740 aaPredicted RBP9.2□□□□□ -0.94
SMC1A-202ENST00000375340 WIZO95785 1651 aa9.2□□□□□ -0.94
SMC1A-202ENST00000375340 CECR2Q9BXF3 1484 aa9.19□□□□□ -0.94
SMC1A-202ENST00000375340 CLIP1P30622 1438 aa9.19□□□□□ -0.94
SMC1A-202ENST00000375340 GOLGA3Q08378 1498 aa9.18□□□□□ -0.94
SMC1A-202ENST00000375340 CDK11AQ9UQ88 783 aaPredicted RBP9.17□□□□□ -0.94
SMC1A-202ENST00000375340 DDX10Q13206 875 aaKnown RBP9.17□□□□□ -0.94
SMC1A-202ENST00000375340 HIRIP3Q9BW71 556 aaPredicted RBP9.17□□□□□ -0.94
SMC1A-202ENST00000375340 MYT1LQ9UL68 1186 aa9.16□□□□□ -0.94
SMC1A-202ENST00000375340 RTL5Q5HYW3 569 aaPredicted RBP9.15□□□□□ -0.95
SMC1A-202ENST00000375340 NACADO15069 1562 aa9.14□□□□□ -0.95
SMC1A-202ENST00000375340 MROH2BQ7Z745 1585 aa9.13□□□□□ -0.95
SMC1A-202ENST00000375340 SOGA1O94964 1423 aa9.13□□□□□ -0.95
SMC1A-202ENST00000375340 IRX6P78412 446 aaPredicted RBP9.12□□□□□ -0.95
SMC1A-202ENST00000375340 SLC4A1APQ9BWU0 796 aaKnown RBP9.12□□□□□ -0.95
SMC1A-202ENST00000375340 TONSLQ96HA7 1378 aa9.09□□□□□ -0.95
SMC1A-202ENST00000375340 TNIKQ9UKE5 1360 aa9.08□□□□□ -0.96
SMC1A-202ENST00000375340 WRNQ14191 1432 aaPredicted RBP eCLIP9.08□□□□□ -0.96
SMC1A-202ENST00000375340 NPM2Q86SE8 214 aaKnown RBP9.07□□□□□ -0.96
SMC1A-202ENST00000375340 HNRNPUQ00839 825 aaKnown RBP eCLIP9.07□□□□□ -0.96
SMC1A-202ENST00000375340 BAZ1AQ9NRL2 1556 aaPredicted RBP9.07□□□□□ -0.96
SMC1A-202ENST00000375340 CCDC88BA6NC98 1476 aa9.07□□□□□ -0.96
SMC1A-202ENST00000375340 FAM9BQ8IZU0 186 aa9.06□□□□□ -0.96
SMC1A-202ENST00000375340 CLSPNQ9HAW4 1339 aa9.06□□□□□ -0.96
SMC1A-202ENST00000375340 CHIC2Q9UKJ5 165 aa9.05□□□□□ -0.96
SMC1A-202ENST00000375340 CEP164Q9UPV0 1460 aa9.05□□□□□ -0.96
SMC1A-202ENST00000375340 ZNF777Q9ULD5 760 aaPredicted RBP9.04□□□□□ -0.96
SMC1A-202ENST00000375340 BAZ1BQ9UIG0 1483 aaKnown RBP9.04□□□□□ -0.96
SMC1A-202ENST00000375340 FBLN2P98095 1184 aa9.03□□□□□ -0.96
SMC1A-202ENST00000375340 EEA1Q15075 1411 aa9.03□□□□□ -0.96
SMC1A-202ENST00000375340 NBR1Q14596 966 aa9.02□□□□□ -0.97
SMC1A-202ENST00000375340 SENP3-EIF4A1A0A087X0R7 540 aa9.01□□□□□ -0.97
SMC1A-202ENST00000375340 SUPT16HQ9Y5B9 1047 aaKnown RBP9.01□□□□□ -0.97
SMC1A-202ENST00000375340 TOP2AP11388 1531 aaKnown RBP8.99□□□□□ -0.97
SMC1A-202ENST00000375340 ANP32AP39687 249 aaKnown RBP8.99□□□□□ -0.97
SMC1A-202ENST00000375340 SALL2Q9Y467 1007 aaPredicted RBP8.98□□□□□ -0.97
SMC1A-202ENST00000375340 SIN3AQ96ST3 1273 aa8.97□□□□□ -0.97
SMC1A-202ENST00000375340 RRP7BPQ9NSQ0 103 aa8.96□□□□□ -0.97
SMC1A-202ENST00000375340 BCL11AQ9H165 835 aa8.95□□□□□ -0.98
SMC1A-202ENST00000375340 RUSC2Q8N2Y8 1516 aa8.94□□□□□ -0.98
SMC1A-202ENST00000375340 CANXP27824 592 aaKnown RBP8.94□□□□□ -0.98
SMC1A-202ENST00000375340 MTUS2Q5JR59 1369 aa8.93□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms