RNA–Protein interactions for RNA: ENST00000374767.4

NIPSNAP3A-201, Transcript of nipsnap homolog 3A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NIPSNAP3A, Length 1,633 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIPSNAP3A-201ENST00000374767 NISCHQ9Y2I1 1504 aa31.13■■■□□ 2.57
NIPSNAP3A-201ENST00000374767 CCDC180Q9P1Z9 1646 aa26.97■■□□□ 1.91
NIPSNAP3A-201ENST00000374767 ZCCHC6Q5VYS8 1495 aaKnown RBP26.19■■□□□ 1.78
NIPSNAP3A-201ENST00000374767 DCAF1Q9Y4B6 1507 aa25.83■■□□□ 1.72
NIPSNAP3A-201ENST00000374767 DCAF8L2P0C7V8 631 aa25.51■■□□□ 1.67
NIPSNAP3A-201ENST00000374767 MYO15BQ96JP2 1530 aa25.47■■□□□ 1.67
NIPSNAP3A-201ENST00000374767 SHROOM4Q9ULL8 1493 aa25.38■■□□□ 1.65
NIPSNAP3A-201ENST00000374767 ABCC9O60706 1549 aa25.28■■□□□ 1.64
NIPSNAP3A-201ENST00000374767 NACADO15069 1562 aa25.15■■□□□ 1.62
NIPSNAP3A-201ENST00000374767 RB1CC1Q8TDY2 1594 aa24.82■■□□□ 1.56
NIPSNAP3A-201ENST00000374767 SCRIBQ14160 1630 aa24.74■■□□□ 1.55
NIPSNAP3A-201ENST00000374767 SUPT5HO00267 1087 aaKnown RBP24.57■■□□□ 1.52
NIPSNAP3A-201ENST00000374767 RSF1Q96T23 1441 aaPredicted RBP24.25■■□□□ 1.47
NIPSNAP3A-201ENST00000374767 UNC13AQ9UPW8 1703 aa24.18■■□□□ 1.46
NIPSNAP3A-201ENST00000374767 CECR2Q9BXF3 1484 aa24.12■■□□□ 1.45
NIPSNAP3A-201ENST00000374767 BICRAQ9NZM4 1560 aa24.08■■□□□ 1.45
NIPSNAP3A-201ENST00000374767 MROH2BQ7Z745 1585 aa24.01■■□□□ 1.43
NIPSNAP3A-201ENST00000374767 BAZ1AQ9NRL2 1556 aaPredicted RBP24■■□□□ 1.43
NIPSNAP3A-201ENST00000374767 PABPN1Q86U42 306 aaKnown RBP eCLIP23.91■■□□□ 1.42
NIPSNAP3A-201ENST00000374767 SMARCA4P51532 1647 aa23.81■■□□□ 1.4
NIPSNAP3A-201ENST00000374767 CHIC1Q5VXU3 224 aa23.75■■□□□ 1.39
NIPSNAP3A-201ENST00000374767 WIZO95785 1651 aa23.75■■□□□ 1.39
NIPSNAP3A-201ENST00000374767 PEG3Q9GZU2 1588 aa23.62■■□□□ 1.37
NIPSNAP3A-201ENST00000374767 TOP2AP11388 1531 aaKnown RBP23.59■■□□□ 1.37
NIPSNAP3A-201ENST00000374767 ATAD2BQ9ULI0 1458 aa23.45■■□□□ 1.35
NIPSNAP3A-201ENST00000374767 SMARCA2P51531 1590 aa23.42■■□□□ 1.34
NIPSNAP3A-201ENST00000374767 CCDC88BA6NC98 1476 aa23.38■■□□□ 1.33
NIPSNAP3A-201ENST00000374767 EIF4G1Q04637 1599 aaKnown RBP23.32■■□□□ 1.32
NIPSNAP3A-201ENST00000374767 NCAPD3P42695 1498 aa23.27■■□□□ 1.32
NIPSNAP3A-201ENST00000374767 BAZ1BQ9UIG0 1483 aaKnown RBP23.27■■□□□ 1.32
NIPSNAP3A-201ENST00000374767 HMGXB3Q12766 1538 aa23.19■■□□□ 1.3
NIPSNAP3A-201ENST00000374767 TRIM41Q8WV44 630 aa23.17■■□□□ 1.3
NIPSNAP3A-201ENST00000374767 CC2D2AQ9P2K1 1620 aa22.89■■□□□ 1.25
NIPSNAP3A-201ENST00000374767 ABCC8Q09428 1581 aa22.84■■□□□ 1.25
NIPSNAP3A-201ENST00000374767 WRNQ14191 1432 aaPredicted RBP eCLIP22.79■■□□□ 1.24
NIPSNAP3A-201ENST00000374767 CFTRP13569 1480 aa22.78■■□□□ 1.24
NIPSNAP3A-201ENST00000374767 LOC105371045A0A1W2PR82 267 aa22.78■■□□□ 1.24
NIPSNAP3A-201ENST00000374767 CADPSQ9ULU8 1353 aa22.66■■□□□ 1.22
NIPSNAP3A-201ENST00000374767 EEA1Q15075 1411 aa22.64■■□□□ 1.21
NIPSNAP3A-201ENST00000374767 FAM9AQ8IZU1 332 aaPredicted RBP22.63■■□□□ 1.21
NIPSNAP3A-201ENST00000374767 SYNJ1O43426 1573 aa22.61■■□□□ 1.21
NIPSNAP3A-201ENST00000374767 TOP2BQ02880 1626 aa22.55■■□□□ 1.2
NIPSNAP3A-201ENST00000374767 SOGA1O94964 1423 aa22.55■■□□□ 1.2
NIPSNAP3A-201ENST00000374767 BIVM-ERCC5R4GMW8 1640 aa22.49■■□□□ 1.19
NIPSNAP3A-201ENST00000374767 PRDM2Q13029 1718 aa22.48■■□□□ 1.19
NIPSNAP3A-201ENST00000374767 CSRNP3Q8WYN3 585 aa22.47■■□□□ 1.19
NIPSNAP3A-201ENST00000374767 CUX1P39880 1505 aa22.43■■□□□ 1.18
NIPSNAP3A-201ENST00000374767 RUSC2Q8N2Y8 1516 aa22.42■■□□□ 1.18
NIPSNAP3A-201ENST00000374767 LAMC3Q9Y6N6 1575 aa22.35■■□□□ 1.17
NIPSNAP3A-201ENST00000374767 FANCD2Q9BXW9 1451 aa22.35■■□□□ 1.17
NIPSNAP3A-201ENST00000374767 TNIKQ9UKE5 1360 aa22.3■■□□□ 1.16
NIPSNAP3A-201ENST00000374767 DNAJC5BQ9UF47 199 aa22.28■■□□□ 1.16
NIPSNAP3A-201ENST00000374767 NESP48681 1621 aa22.26■■□□□ 1.15
NIPSNAP3A-201ENST00000374767 GOLGA3Q08378 1498 aa22.26■■□□□ 1.15
NIPSNAP3A-201ENST00000374767 CEP164Q9UPV0 1460 aa22.26■■□□□ 1.15
NIPSNAP3A-201ENST00000374767 KIF21BO75037 1637 aa22.24■■□□□ 1.15
NIPSNAP3A-201ENST00000374767 PDS5BQ9NTI5 1447 aa22.22■■□□□ 1.15
NIPSNAP3A-201ENST00000374767 KIF27Q86VH2 1401 aa22.21■■□□□ 1.15
NIPSNAP3A-201ENST00000374767 EHMT2Q96KQ7 1210 aa22.2■■□□□ 1.15
NIPSNAP3A-201ENST00000374767 DNMBPQ6XZF7 1577 aa22.17■■□□□ 1.14
NIPSNAP3A-201ENST00000374767 PRXQ9BXM0 1461 aa22.15■■□□□ 1.14
NIPSNAP3A-201ENST00000374767 FGD5Q6ZNL6 1462 aa22.14■■□□□ 1.14
NIPSNAP3A-201ENST00000374767 TOPBP1Q92547 1522 aa22.13■■□□□ 1.13
NIPSNAP3A-201ENST00000374767 UBTFP17480 764 aaKnown RBP22.12■■□□□ 1.13
NIPSNAP3A-201ENST00000374767 CEP162Q5TB80 1403 aa22.11■■□□□ 1.13
NIPSNAP3A-201ENST00000374767 ERICH3Q5RHP9 1530 aa22.09■■□□□ 1.13
NIPSNAP3A-201ENST00000374767 RAPGEF2Q9Y4G8 1499 aa22.07■■□□□ 1.12
NIPSNAP3A-201ENST00000374767 CUX2O14529 1486 aa22.05■■□□□ 1.12
NIPSNAP3A-201ENST00000374767 URB2Q14146 1524 aaKnown RBP22.04■■□□□ 1.12
NIPSNAP3A-201ENST00000374767 IGF1RP08069 1367 aa22.04■■□□□ 1.12
NIPSNAP3A-201ENST00000374767 POLA1P09884 1462 aaPredicted RBP22.04■■□□□ 1.12
NIPSNAP3A-201ENST00000374767 ABCA10Q8WWZ4 1543 aa22.02■■□□□ 1.12
NIPSNAP3A-201ENST00000374767 TRIM26Q12899 539 aaPredicted RBP21.98■■□□□ 1.11
NIPSNAP3A-201ENST00000374767 RAD54L2Q9Y4B4 1467 aa21.93■■□□□ 1.1
NIPSNAP3A-201ENST00000374767 PCGF6Q9BYE7 350 aa21.93■■□□□ 1.1
NIPSNAP3A-201ENST00000374767 KIF21AQ7Z4S6 1674 aa21.91■■□□□ 1.1
NIPSNAP3A-201ENST00000374767 CLIP1P30622 1438 aa21.9■■□□□ 1.1
NIPSNAP3A-201ENST00000374767 CARMIL1Q5VZK9 1371 aa21.89■■□□□ 1.1
NIPSNAP3A-201ENST00000374767 MRC2Q9UBG0 1479 aa21.87■■□□□ 1.09
NIPSNAP3A-201ENST00000374767 WDR97A6NE52 1622 aa21.81■■□□□ 1.08
NIPSNAP3A-201ENST00000374767 VPS8Q8N3P4 1428 aa21.76■■□□□ 1.07
NIPSNAP3A-201ENST00000374767 WDR62O43379 1518 aa21.76■■□□□ 1.07
NIPSNAP3A-201ENST00000374767 TARBP1Q13395 1621 aaKnown RBP21.76■■□□□ 1.07
NIPSNAP3A-201ENST00000374767 ABCA5Q8WWZ7 1642 aa21.75■■□□□ 1.07
NIPSNAP3A-201ENST00000374767 GAPVD1Q14C86 1478 aa21.74■■□□□ 1.07
NIPSNAP3A-201ENST00000374767 CUL7Q14999 1698 aa21.73■■□□□ 1.07
NIPSNAP3A-201ENST00000374767 TDRD9Q8NDG6 1382 aaKnown RBP21.72■■□□□ 1.07
NIPSNAP3A-201ENST00000374767 IFT140Q96RY7 1462 aa21.67■■□□□ 1.06
NIPSNAP3A-201ENST00000374767 ERCC6Q03468 1493 aa21.66■■□□□ 1.06
NIPSNAP3A-201ENST00000374767 ARAP1Q96P48 1450 aa21.65■■□□□ 1.06
NIPSNAP3A-201ENST00000374767 ARHGAP35Q9NRY4 1499 aa21.63■■□□□ 1.05
NIPSNAP3A-201ENST00000374767 PPARGC1BQ86YN6 1023 aaKnown RBP21.58■■□□□ 1.04
NIPSNAP3A-201ENST00000374767 THOC2Q8NI27 1593 aaKnown RBP21.58■■□□□ 1.04
NIPSNAP3A-201ENST00000374767 RANGAP1P46060 587 aaPredicted RBP21.55■■□□□ 1.04
NIPSNAP3A-201ENST00000374767 GRIN2BQ13224 1484 aa21.55■■□□□ 1.04
NIPSNAP3A-201ENST00000374767 HRCP23327 699 aa21.55■■□□□ 1.04
NIPSNAP3A-201ENST00000374767 FHAD1B1AJZ9 1412 aa21.55■■□□□ 1.04
NIPSNAP3A-201ENST00000374767 AQRO60306 1485 aaKnown RBP eCLIP21.54■■□□□ 1.04
NIPSNAP3A-201ENST00000374767 APLP2Q06481 763 aa21.52■■□□□ 1.04
NIPSNAP3A-201ENST00000374767 EFCAB5A4FU69 1503 aa21.48■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 6.6 ms