RNA–Protein interactions for RNA: ENST00000372484.7

CTSA-204, Transcript of cathepsin A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CTSA, Length 2,149 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTSA-204ENST00000372484 NISCHQ9Y2I1 1504 aa39.07■■■■□ 3.84
CTSA-204ENST00000372484 CCDC180Q9P1Z9 1646 aa33.73■■■□□ 2.99
CTSA-204ENST00000372484 ZCCHC6Q5VYS8 1495 aaKnown RBP32.91■■■□□ 2.86
CTSA-204ENST00000372484 SHROOM4Q9ULL8 1493 aa32.48■■■□□ 2.79
CTSA-204ENST00000372484 DCAF8L2P0C7V8 631 aa32.32■■■□□ 2.76
CTSA-204ENST00000372484 DCAF1Q9Y4B6 1507 aa32.2■■■□□ 2.75
CTSA-204ENST00000372484 MYO15BQ96JP2 1530 aa31.58■■■□□ 2.65
CTSA-204ENST00000372484 ABCC9O60706 1549 aa31.57■■■□□ 2.64
CTSA-204ENST00000372484 SUPT5HO00267 1087 aaKnown RBP31.54■■■□□ 2.64
CTSA-204ENST00000372484 NACADO15069 1562 aa31.3■■■□□ 2.6
CTSA-204ENST00000372484 SCRIBQ14160 1630 aa31.25■■■□□ 2.59
CTSA-204ENST00000372484 RB1CC1Q8TDY2 1594 aa30.93■■■□□ 2.54
CTSA-204ENST00000372484 RSF1Q96T23 1441 aaPredicted RBP30.56■■■□□ 2.48
CTSA-204ENST00000372484 UNC13AQ9UPW8 1703 aa30.4■■■□□ 2.46
CTSA-204ENST00000372484 CHIC1Q5VXU3 224 aa30.39■■■□□ 2.46
CTSA-204ENST00000372484 CECR2Q9BXF3 1484 aa30.39■■■□□ 2.46
CTSA-204ENST00000372484 MROH2BQ7Z745 1585 aa30.26■■■□□ 2.43
CTSA-204ENST00000372484 BAZ1AQ9NRL2 1556 aaPredicted RBP30.11■■■□□ 2.41
CTSA-204ENST00000372484 WIZO95785 1651 aa30.07■■■□□ 2.4
CTSA-204ENST00000372484 BICRAQ9NZM4 1560 aa30.01■■■□□ 2.4
CTSA-204ENST00000372484 PABPN1Q86U42 306 aaKnown RBP eCLIP29.94■■■□□ 2.381e-6■■□□□ 12.3
CTSA-204ENST00000372484 SMARCA4P51532 1647 aa29.92■■■□□ 2.38
CTSA-204ENST00000372484 TOP2AP11388 1531 aaKnown RBP29.68■■■□□ 2.34
CTSA-204ENST00000372484 TRIM41Q8WV44 630 aa29.54■■■□□ 2.32
CTSA-204ENST00000372484 PEG3Q9GZU2 1588 aa29.46■■■□□ 2.31
CTSA-204ENST00000372484 SMARCA2P51531 1590 aa29.45■■■□□ 2.31
CTSA-204ENST00000372484 CCDC88BA6NC98 1476 aa29.44■■■□□ 2.3
CTSA-204ENST00000372484 EIF4G1Q04637 1599 aaKnown RBP29.41■■■□□ 2.3
CTSA-204ENST00000372484 LOC105371045A0A1W2PR82 267 aa29.35■■■□□ 2.29
CTSA-204ENST00000372484 ATAD2BQ9ULI0 1458 aa29.29■■■□□ 2.28
CTSA-204ENST00000372484 BAZ1BQ9UIG0 1483 aaKnown RBP29.18■■■□□ 2.26
CTSA-204ENST00000372484 FAM9AQ8IZU1 332 aaPredicted RBP29.11■■■□□ 2.25
CTSA-204ENST00000372484 ABCC8Q09428 1581 aa29.07■■■□□ 2.24
CTSA-204ENST00000372484 NCAPD3P42695 1498 aa28.9■■■□□ 2.22
CTSA-204ENST00000372484 HMGXB3Q12766 1538 aa28.89■■■□□ 2.22
CTSA-204ENST00000372484 EHMT2Q96KQ7 1210 aa28.78■■■□□ 2.2
CTSA-204ENST00000372484 WRNQ14191 1432 aaPredicted RBP eCLIP28.76■■■□□ 2.19
CTSA-204ENST00000372484 SOGA1O94964 1423 aa28.64■■■□□ 2.17
CTSA-204ENST00000372484 SYNJ1O43426 1573 aa28.63■■■□□ 2.17
CTSA-204ENST00000372484 PCGF6Q9BYE7 350 aa28.62■■■□□ 2.17
CTSA-204ENST00000372484 EEA1Q15075 1411 aa28.58■■■□□ 2.17
CTSA-204ENST00000372484 CC2D2AQ9P2K1 1620 aa28.53■■■□□ 2.16
CTSA-204ENST00000372484 RUSC2Q8N2Y8 1516 aa28.5■■■□□ 2.15
CTSA-204ENST00000372484 CSRNP3Q8WYN3 585 aa28.46■■■□□ 2.15
CTSA-204ENST00000372484 CFTRP13569 1480 aa28.45■■■□□ 2.14
CTSA-204ENST00000372484 TOP2BQ02880 1626 aa28.43■■■□□ 2.14
CTSA-204ENST00000372484 TRIM26Q12899 539 aaPredicted RBP28.38■■■□□ 2.13
CTSA-204ENST00000372484 BIVM-ERCC5R4GMW8 1640 aa28.37■■■□□ 2.13
CTSA-204ENST00000372484 PRDM2Q13029 1718 aa28.32■■■□□ 2.12
CTSA-204ENST00000372484 TNIKQ9UKE5 1360 aa28.27■■■□□ 2.12
CTSA-204ENST00000372484 GOLGA3Q08378 1498 aa28.27■■■□□ 2.12
CTSA-204ENST00000372484 CADPSQ9ULU8 1353 aa28.25■■■□□ 2.11
CTSA-204ENST00000372484 CUX1P39880 1505 aa28.24■■■□□ 2.11
CTSA-204ENST00000372484 UBTFP17480 764 aaKnown RBP28.23■■■□□ 2.11
CTSA-204ENST00000372484 CEP162Q5TB80 1403 aa28.22■■■□□ 2.11
CTSA-204ENST00000372484 CEP164Q9UPV0 1460 aa28.2■■■□□ 2.11
CTSA-204ENST00000372484 KIF21BO75037 1637 aa28.2■■■□□ 2.1
CTSA-204ENST00000372484 HRCP23327 699 aa28.18■■■□□ 2.1
CTSA-204ENST00000372484 RAPGEF2Q9Y4G8 1499 aa28.01■■■□□ 2.07
CTSA-204ENST00000372484 PPARGC1BQ86YN6 1023 aaKnown RBP27.99■■■□□ 2.07
CTSA-204ENST00000372484 KIF27Q86VH2 1401 aa27.97■■■□□ 2.07
CTSA-204ENST00000372484 FANCD2Q9BXW9 1451 aa27.96■■■□□ 2.07
CTSA-204ENST00000372484 PRXQ9BXM0 1461 aa27.9■■■□□ 2.06
CTSA-204ENST00000372484 NESP48681 1621 aa27.9■■■□□ 2.06
CTSA-204ENST00000372484 ERICH3Q5RHP9 1530 aa27.89■■■□□ 2.06
CTSA-204ENST00000372484 CLIP1P30622 1438 aa27.87■■■□□ 2.05
CTSA-204ENST00000372484 FGD5Q6ZNL6 1462 aa27.85■■■□□ 2.05
CTSA-204ENST00000372484 LAMC3Q9Y6N6 1575 aa27.83■■■□□ 2.05
CTSA-204ENST00000372484 CUX2O14529 1486 aa27.8■■■□□ 2.04
CTSA-204ENST00000372484 DNMBPQ6XZF7 1577 aa27.77■■■□□ 2.04
CTSA-204ENST00000372484 DNAJC5BQ9UF47 199 aa27.74■■■□□ 2.03
CTSA-204ENST00000372484 TOPBP1Q92547 1522 aa27.71■■■□□ 2.03
CTSA-204ENST00000372484 RANGAP1P46060 587 aaPredicted RBP27.71■■■□□ 2.03
CTSA-204ENST00000372484 VPS8Q8N3P4 1428 aa27.68■■■□□ 2.02
CTSA-204ENST00000372484 TTBK1Q5TCY1 1321 aaPredicted RBP27.68■■■□□ 2.02
CTSA-204ENST00000372484 IGF1RP08069 1367 aa27.67■■■□□ 2.02
CTSA-204ENST00000372484 POLA1P09884 1462 aaPredicted RBP27.63■■■□□ 2.01
CTSA-204ENST00000372484 PDS5BQ9NTI5 1447 aa27.63■■■□□ 2.01
CTSA-204ENST00000372484 RAD54L2Q9Y4B4 1467 aa27.59■■■□□ 2.01
CTSA-204ENST00000372484 URB2Q14146 1524 aaKnown RBP27.58■■■□□ 2
CTSA-204ENST00000372484 ABCA10Q8WWZ4 1543 aa27.58■■■□□ 2
CTSA-204ENST00000372484 CARMIL1Q5VZK9 1371 aa27.56■■■□□ 2
CTSA-204ENST00000372484 KIF21AQ7Z4S6 1674 aa27.53■■■□□ 2
CTSA-204ENST00000372484 ARAP1Q96P48 1450 aa27.5■■□□□ 1.99
CTSA-204ENST00000372484 ZEB1P37275 1124 aaPredicted RBP27.5■■□□□ 1.99
CTSA-204ENST00000372484 APLP2Q06481 763 aa27.5■■□□□ 1.99
CTSA-204ENST00000372484 WDR97A6NE52 1622 aa27.42■■□□□ 1.98
CTSA-204ENST00000372484 ARHGAP35Q9NRY4 1499 aa27.39■■□□□ 1.98
CTSA-204ENST00000372484 CUL7Q14999 1698 aa27.36■■□□□ 1.97
CTSA-204ENST00000372484 ABCA5Q8WWZ7 1642 aa27.3■■□□□ 1.96
CTSA-204ENST00000372484 TDRD9Q8NDG6 1382 aaKnown RBP27.29■■□□□ 1.96
CTSA-204ENST00000372484 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP27.28■■□□□ 1.96
CTSA-204ENST00000372484 GAPVD1Q14C86 1478 aa27.26■■□□□ 1.95
CTSA-204ENST00000372484 TARBP1Q13395 1621 aaKnown RBP27.23■■□□□ 1.95
CTSA-204ENST00000372484 MRC2Q9UBG0 1479 aa27.23■■□□□ 1.95
CTSA-204ENST00000372484 CCER1Q8TC90 406 aaPredicted RBP27.23■■□□□ 1.95
CTSA-204ENST00000372484 CTTNBP2Q8WZ74 1663 aa27.18■■□□□ 1.94
CTSA-204ENST00000372484 KANK4Q5T7N3 995 aaPredicted RBP27.15■■□□□ 1.94
CTSA-204ENST00000372484 HNRNPUL2Q1KMD3 747 aaKnown RBP27.09■■□□□ 1.93
CTSA-204ENST00000372484 EFCAB5A4FU69 1503 aa27.08■■□□□ 1.93
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms