RNA–Protein interactions for RNA: ENST00000371429.3

NDC1-201, Transcript of NDC1 transmembrane nucleoporin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NDC1, Length 5,134 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NDC1-201ENST00000371429 DCAF8L2P0C7V8 631 aa26.49■■□□□ 1.83
NDC1-201ENST00000371429 NISCHQ9Y2I1 1504 aa25.43■■□□□ 1.66
NDC1-201ENST00000371429 SUPT5HO00267 1087 aaKnown RBP24.71■■□□□ 1.55
NDC1-201ENST00000371429 SHROOM4Q9ULL8 1493 aa24.43■■□□□ 1.5
NDC1-201ENST00000371429 EHMT2Q96KQ7 1210 aa23.84■■□□□ 1.41
NDC1-201ENST00000371429 APLP2Q06481 763 aa23.43■■□□□ 1.34
NDC1-201ENST00000371429 FAM9AQ8IZU1 332 aaPredicted RBP23.33■■□□□ 1.33
NDC1-201ENST00000371429 RANGAP1P46060 587 aaPredicted RBP22.98■■□□□ 1.27
NDC1-201ENST00000371429 TTBK1Q5TCY1 1321 aaPredicted RBP22.94■■□□□ 1.26
NDC1-201ENST00000371429 TRIM41Q8WV44 630 aa22.94■■□□□ 1.26
NDC1-201ENST00000371429 ATP1B4Q9UN42 357 aaPredicted RBP22.82■■□□□ 1.24
NDC1-201ENST00000371429 UBTFP17480 764 aaKnown RBP22.7■■□□□ 1.22
NDC1-201ENST00000371429 PCGF6Q9BYE7 350 aa22.52■■□□□ 1.2
NDC1-201ENST00000371429 PELP1Q8IZL8 1130 aaKnown RBP22.4■■□□□ 1.18
NDC1-201ENST00000371429 ABCC9O60706 1549 aa22.31■■□□□ 1.16
NDC1-201ENST00000371429 CCER1Q8TC90 406 aaPredicted RBP22.27■■□□□ 1.15
NDC1-201ENST00000371429 PABPN1Q86U42 306 aaKnown RBP eCLIP22.18■■□□□ 1.14
NDC1-201ENST00000371429 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.16■■□□□ 1.14
NDC1-201ENST00000371429 HNRNPUL2Q1KMD3 747 aaKnown RBP22.16■■□□□ 1.14
NDC1-201ENST00000371429 MYT1LQ9UL68 1186 aa22.08■■□□□ 1.13
NDC1-201ENST00000371429 ZEB1P37275 1124 aaPredicted RBP22.07■■□□□ 1.12
NDC1-201ENST00000371429 PPARGC1BQ86YN6 1023 aaKnown RBP22.05■■□□□ 1.12
NDC1-201ENST00000371429 ITGAEP38570 1179 aa21.88■■□□□ 1.09
NDC1-201ENST00000371429 CHIC1Q5VXU3 224 aa21.79■■□□□ 1.08
NDC1-201ENST00000371429 CENPBP07199 599 aaPredicted RBP21.77■■□□□ 1.08
NDC1-201ENST00000371429 LOC105371045A0A1W2PR82 267 aa21.74■■□□□ 1.07
NDC1-201ENST00000371429 TRIM26Q12899 539 aaPredicted RBP21.66■■□□□ 1.06
NDC1-201ENST00000371429 POLR3GLQ9BT43 218 aa21.56■■□□□ 1.04
NDC1-201ENST00000371429 FBLN2P98095 1184 aa21.56■■□□□ 1.04
NDC1-201ENST00000371429 NEFLP07196 543 aa21.5■■□□□ 1.03
NDC1-201ENST00000371429 YTHDC1Q96MU7 727 aaKnown RBP21.48■■□□□ 1.03
NDC1-201ENST00000371429 ERICH6Q7L0X2 663 aa21.39■■□□□ 1.02
NDC1-201ENST00000371429 FAM50AQ14320 339 aaKnown RBP21.39■■□□□ 1.01
NDC1-201ENST00000371429 CNGB1Q14028 1251 aaPredicted RBP21.3■■□□□ 1
NDC1-201ENST00000371429 SLC4A1APQ9BWU0 796 aaKnown RBP21.29■■□□□ 1
NDC1-201ENST00000371429 TRIM52Q96A61 297 aa21.26■□□□□ 0.99
NDC1-201ENST00000371429 SCRIBQ14160 1630 aa21.2■□□□□ 0.98
NDC1-201ENST00000371429 HRCP23327 699 aa21.14■□□□□ 0.97
NDC1-201ENST00000371429 P3H3Q8IVL6 736 aa21.12■□□□□ 0.97
NDC1-201ENST00000371429 ARID3CA6NKF2 412 aa21.1■□□□□ 0.97
NDC1-201ENST00000371429 CSRNP3Q8WYN3 585 aa21.07■□□□□ 0.96
NDC1-201ENST00000371429 NEUROD1Q13562 356 aa21.01■□□□□ 0.95
NDC1-201ENST00000371429 ZNF326Q5BKZ1 582 aaKnown RBP20.97■□□□□ 0.95
NDC1-201ENST00000371429 ZCCHC6Q5VYS8 1495 aaKnown RBP20.96■□□□□ 0.95
NDC1-201ENST00000371429 CDK11AQ9UQ88 783 aaPredicted RBP20.94■□□□□ 0.94
NDC1-201ENST00000371429 ZNF777Q9ULD5 760 aaPredicted RBP20.92■□□□□ 0.94
NDC1-201ENST00000371429 NPM1P06748 294 aaKnown RBP eCLIP20.87■□□□□ 0.93
NDC1-201ENST00000371429 BCANQ96GW7 911 aa20.86■□□□□ 0.93
NDC1-201ENST00000371429 CCDC180Q9P1Z9 1646 aa20.82■□□□□ 0.92
NDC1-201ENST00000371429 DAXXQ9UER7 740 aaPredicted RBP20.81■□□□□ 0.92
NDC1-201ENST00000371429 ESF1Q9H501 851 aaKnown RBP20.8■□□□□ 0.92
NDC1-201ENST00000371429 RB1CC1Q8TDY2 1594 aa20.74■□□□□ 0.91
NDC1-201ENST00000371429 DIEXFQ68CQ4 756 aaKnown RBP20.72■□□□□ 0.91
NDC1-201ENST00000371429 CHMP7Q8WUX9 453 aaPredicted RBP20.67■□□□□ 0.9
NDC1-201ENST00000371429 CLSPNQ9HAW4 1339 aa20.61■□□□□ 0.89
NDC1-201ENST00000371429 PLPPR3Q6T4P5 718 aa20.6■□□□□ 0.89
NDC1-201ENST00000371429 STAG3Q9UJ98 1225 aa20.59■□□□□ 0.89
NDC1-201ENST00000371429 ANP32CO43423 234 aa20.58■□□□□ 0.89
NDC1-201ENST00000371429 CHGAP10645 457 aaKnown RBP20.58■□□□□ 0.88
NDC1-201ENST00000371429 SLC24A1O60721 1099 aa20.54■□□□□ 0.88
NDC1-201ENST00000371429 NEFMP07197 916 aa20.51■□□□□ 0.87
NDC1-201ENST00000371429 NACADO15069 1562 aa20.47■□□□□ 0.87
NDC1-201ENST00000371429 TSPY4P0CV99 314 aa20.44■□□□□ 0.86
NDC1-201ENST00000371429 TSPY10P0CW01 314 aa20.44■□□□□ 0.86
NDC1-201ENST00000371429 CHIC2Q9UKJ5 165 aa20.43■□□□□ 0.86
NDC1-201ENST00000371429 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.42■□□□□ 0.86
NDC1-201ENST00000371429 ZBTB47Q9UFB7 747 aaPredicted RBP20.4■□□□□ 0.86
NDC1-201ENST00000371429 MTUS2Q5JR59 1369 aa20.38■□□□□ 0.85
NDC1-201ENST00000371429 BAZ1BQ9UIG0 1483 aaKnown RBP20.37■□□□□ 0.85
NDC1-201ENST00000371429 ZNF316A6NFI3 1004 aaPredicted RBP20.37■□□□□ 0.85
NDC1-201ENST00000371429 TONSLQ96HA7 1378 aa20.35■□□□□ 0.85
NDC1-201ENST00000371429 KCNH8Q96L42 1107 aa20.33■□□□□ 0.85
NDC1-201ENST00000371429 RSF1Q96T23 1441 aaPredicted RBP20.33■□□□□ 0.85
NDC1-201ENST00000371429 CANXP27824 592 aaKnown RBP20.32■□□□□ 0.84
NDC1-201ENST00000371429 PLEKHD1A6NEE1 506 aa20.27■□□□□ 0.84
NDC1-201ENST00000371429 ERCC6Q03468 1493 aa20.27■□□□□ 0.84
NDC1-201ENST00000371429 BCL11AQ9H165 835 aa20.26■□□□□ 0.83
NDC1-201ENST00000371429 CLIP1P30622 1438 aa20.23■□□□□ 0.83
NDC1-201ENST00000371429 WRNQ14191 1432 aaPredicted RBP eCLIP20.21■□□□□ 0.83
NDC1-201ENST00000371429 KDM2AQ9Y2K7 1162 aa20.16■□□□□ 0.82
NDC1-201ENST00000371429 KIF27Q86VH2 1401 aa20.14■□□□□ 0.81
NDC1-201ENST00000371429 EEA1Q15075 1411 aa20.14■□□□□ 0.81
NDC1-201ENST00000371429 RRP7BPQ9NSQ0 103 aa20.1■□□□□ 0.81
NDC1-201ENST00000371429 ARID4BQ4LE39 1312 aaPredicted RBP20.08■□□□□ 0.81
NDC1-201ENST00000371429 RTL5Q5HYW3 569 aaPredicted RBP20.08■□□□□ 0.8
NDC1-201ENST00000371429 DCAF1Q9Y4B6 1507 aa20.07■□□□□ 0.8
NDC1-201ENST00000371429 BAZ1AQ9NRL2 1556 aaPredicted RBP20.07■□□□□ 0.8
NDC1-201ENST00000371429 PPP1R15AO75807 674 aaPredicted RBP20.07■□□□□ 0.8
NDC1-201ENST00000371429 GOLGA3Q08378 1498 aa20.06■□□□□ 0.8
NDC1-201ENST00000371429 CFDP1Q9UEE9 299 aaPredicted RBP20.05■□□□□ 0.8
NDC1-201ENST00000371429 SCAF1Q9H7N4 1312 aaKnown RBP20.03■□□□□ 0.8
NDC1-201ENST00000371429 SENP3Q9H4L4 574 aaPredicted RBP20.03■□□□□ 0.8
NDC1-201ENST00000371429 DDX10Q13206 875 aaKnown RBP20.02■□□□□ 0.8
NDC1-201ENST00000371429 CECR2Q9BXF3 1484 aa20■□□□□ 0.79
NDC1-201ENST00000371429 C14orf37Q86TY3 774 aa19.97■□□□□ 0.79
NDC1-201ENST00000371429 GTF3C3Q9Y5Q9 886 aa19.96■□□□□ 0.79
NDC1-201ENST00000371429 CEP162Q5TB80 1403 aa19.96■□□□□ 0.79
NDC1-201ENST00000371429 FAM9BQ8IZU0 186 aa19.95■□□□□ 0.78
NDC1-201ENST00000371429 TMC1Q8TDI8 760 aa19.94■□□□□ 0.78
NDC1-201ENST00000371429 RGL3Q3MIN7 710 aa19.93■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms