RNA–Protein interactions for RNA: ENST00000370966.9

DEPDC1-201, Transcript of DEP domain containing 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene DEPDC1, Length 4,586 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC1-201ENST00000370966 NISCHQ9Y2I1 1504 aa20.66■□□□□ 0.9
DEPDC1-201ENST00000370966 DCAF8L2P0C7V8 631 aa20.51■□□□□ 0.87
DEPDC1-201ENST00000370966 SUPT5HO00267 1087 aaKnown RBP19.73■□□□□ 0.75
DEPDC1-201ENST00000370966 SHROOM4Q9ULL8 1493 aa19.43■□□□□ 0.7
DEPDC1-201ENST00000370966 EHMT2Q96KQ7 1210 aa18.71■□□□□ 0.59
DEPDC1-201ENST00000370966 APLP2Q06481 763 aa18.56■□□□□ 0.56
DEPDC1-201ENST00000370966 FAM9AQ8IZU1 332 aaPredicted RBP18.5■□□□□ 0.55
DEPDC1-201ENST00000370966 PCGF6Q9BYE7 350 aa18.44■□□□□ 0.54
DEPDC1-201ENST00000370966 TRIM41Q8WV44 630 aa18.38■□□□□ 0.53
DEPDC1-201ENST00000370966 PELP1Q8IZL8 1130 aaKnown RBP18.3■□□□□ 0.52
DEPDC1-201ENST00000370966 ZEB1P37275 1124 aaPredicted RBP18.25■□□□□ 0.51
DEPDC1-201ENST00000370966 TTBK1Q5TCY1 1321 aaPredicted RBP18.11■□□□□ 0.49
DEPDC1-201ENST00000370966 CCER1Q8TC90 406 aaPredicted RBP18.03■□□□□ 0.48
DEPDC1-201ENST00000370966 UBTFP17480 764 aaKnown RBP18.03■□□□□ 0.48
DEPDC1-201ENST00000370966 CENPBP07199 599 aaPredicted RBP17.95■□□□□ 0.46
DEPDC1-201ENST00000370966 RANGAP1P46060 587 aaPredicted RBP17.94■□□□□ 0.46
DEPDC1-201ENST00000370966 CHIC1Q5VXU3 224 aa17.89■□□□□ 0.46
DEPDC1-201ENST00000370966 TRIM26Q12899 539 aaPredicted RBP17.86■□□□□ 0.45
DEPDC1-201ENST00000370966 ATP1B4Q9UN42 357 aaPredicted RBP17.77■□□□□ 0.44
DEPDC1-201ENST00000370966 HRCP23327 699 aa17.71■□□□□ 0.43
DEPDC1-201ENST00000370966 LOC105371045A0A1W2PR82 267 aa17.67■□□□□ 0.42
DEPDC1-201ENST00000370966 MYT1Q01538 1121 aa17.65■□□□□ 0.42
DEPDC1-201ENST00000370966 PPARGC1BQ86YN6 1023 aaKnown RBP17.63■□□□□ 0.41
DEPDC1-201ENST00000370966 NEFLP07196 543 aa17.43■□□□□ 0.38
DEPDC1-201ENST00000370966 YTHDC1Q96MU7 727 aaKnown RBP17.4■□□□□ 0.38
DEPDC1-201ENST00000370966 ABCC9O60706 1549 aa17.38■□□□□ 0.37
DEPDC1-201ENST00000370966 ERICH6Q7L0X2 663 aa17.37■□□□□ 0.37
DEPDC1-201ENST00000370966 HNRNPUL2Q1KMD3 747 aaKnown RBP17.33■□□□□ 0.36
DEPDC1-201ENST00000370966 ITGAEP38570 1179 aa17.3■□□□□ 0.36
DEPDC1-201ENST00000370966 PABPN1Q86U42 306 aaKnown RBP eCLIP17.2■□□□□ 0.34
DEPDC1-201ENST00000370966 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.19■□□□□ 0.34
DEPDC1-201ENST00000370966 ZCCHC6Q5VYS8 1495 aaKnown RBP17.16■□□□□ 0.34
DEPDC1-201ENST00000370966 DIEXFQ68CQ4 756 aaKnown RBP17.09■□□□□ 0.33
DEPDC1-201ENST00000370966 CSRNP3Q8WYN3 585 aa16.99■□□□□ 0.31
DEPDC1-201ENST00000370966 FAM50AQ14320 339 aaKnown RBP16.97■□□□□ 0.31
DEPDC1-201ENST00000370966 POLR3GLQ9BT43 218 aa16.96■□□□□ 0.31
DEPDC1-201ENST00000370966 CCDC180Q9P1Z9 1646 aa16.95■□□□□ 0.3
DEPDC1-201ENST00000370966 MYT1LQ9UL68 1186 aa16.95■□□□□ 0.3
DEPDC1-201ENST00000370966 SCRIBQ14160 1630 aa16.85■□□□□ 0.29
DEPDC1-201ENST00000370966 DCAF1Q9Y4B6 1507 aa16.82■□□□□ 0.28
DEPDC1-201ENST00000370966 TRIM52Q96A61 297 aa16.81■□□□□ 0.28
DEPDC1-201ENST00000370966 ZNF316A6NFI3 1004 aaPredicted RBP16.8■□□□□ 0.28
DEPDC1-201ENST00000370966 NEUROD1Q13562 356 aa16.78■□□□□ 0.28
DEPDC1-201ENST00000370966 DAXXQ9UER7 740 aaPredicted RBP16.74■□□□□ 0.27
DEPDC1-201ENST00000370966 CNGB1Q14028 1251 aaPredicted RBP16.74■□□□□ 0.27
DEPDC1-201ENST00000370966 ANP32CO43423 234 aa16.69■□□□□ 0.26
DEPDC1-201ENST00000370966 GTF3C3Q9Y5Q9 886 aa16.65■□□□□ 0.26
DEPDC1-201ENST00000370966 P3H3Q8IVL6 736 aa16.62■□□□□ 0.25
DEPDC1-201ENST00000370966 FBLN2P98095 1184 aa16.57■□□□□ 0.24
DEPDC1-201ENST00000370966 RSF1Q96T23 1441 aaPredicted RBP16.56■□□□□ 0.24
DEPDC1-201ENST00000370966 ACIN1Q9UKV3 1341 aaKnown RBP16.55■□□□□ 0.24
DEPDC1-201ENST00000370966 SLC4A1APQ9BWU0 796 aaKnown RBP16.55■□□□□ 0.24
DEPDC1-201ENST00000370966 CDK11AQ9UQ88 783 aaPredicted RBP16.55■□□□□ 0.24
DEPDC1-201ENST00000370966 ZNF326Q5BKZ1 582 aaKnown RBP16.53■□□□□ 0.24
DEPDC1-201ENST00000370966 RB1CC1Q8TDY2 1594 aa16.48■□□□□ 0.23
DEPDC1-201ENST00000370966 EEA1Q15075 1411 aa16.48■□□□□ 0.23
DEPDC1-201ENST00000370966 CLSPNQ9HAW4 1339 aa16.45■□□□□ 0.22
DEPDC1-201ENST00000370966 NACADO15069 1562 aa16.45■□□□□ 0.22
DEPDC1-201ENST00000370966 RTL5Q5HYW3 569 aaPredicted RBP16.43■□□□□ 0.22
DEPDC1-201ENST00000370966 BCANQ96GW7 911 aa16.43■□□□□ 0.22
DEPDC1-201ENST00000370966 ARID3CA6NKF2 412 aa16.41■□□□□ 0.22
DEPDC1-201ENST00000370966 MYO15BQ96JP2 1530 aa16.41■□□□□ 0.22
DEPDC1-201ENST00000370966 TONSLQ96HA7 1378 aa16.4■□□□□ 0.22
DEPDC1-201ENST00000370966 CLIP1P30622 1438 aa16.4■□□□□ 0.22
DEPDC1-201ENST00000370966 ZNF777Q9ULD5 760 aaPredicted RBP16.37■□□□□ 0.21
DEPDC1-201ENST00000370966 GOLGA3Q08378 1498 aa16.33■□□□□ 0.2
DEPDC1-201ENST00000370966 CEP162Q5TB80 1403 aa16.31■□□□□ 0.2
DEPDC1-201ENST00000370966 WRNQ14191 1432 aaPredicted RBP eCLIP16.3■□□□□ 0.2
DEPDC1-201ENST00000370966 TNIKQ9UKE5 1360 aa16.27■□□□□ 0.2
DEPDC1-201ENST00000370966 MTUS2Q5JR59 1369 aa16.26■□□□□ 0.19
DEPDC1-201ENST00000370966 DDX10Q13206 875 aaKnown RBP16.26■□□□□ 0.19
DEPDC1-201ENST00000370966 BAZ1AQ9NRL2 1556 aaPredicted RBP16.23■□□□□ 0.19
DEPDC1-201ENST00000370966 BAZ1BQ9UIG0 1483 aaKnown RBP16.21■□□□□ 0.19
DEPDC1-201ENST00000370966 CEP164Q9UPV0 1460 aa16.2■□□□□ 0.18
DEPDC1-201ENST00000370966 CHIC2Q9UKJ5 165 aa16.18■□□□□ 0.18
DEPDC1-201ENST00000370966 KIF27Q86VH2 1401 aa16.17■□□□□ 0.18
DEPDC1-201ENST00000370966 NEFMP07197 916 aa16.17■□□□□ 0.18
DEPDC1-201ENST00000370966 HNRNPUQ00839 825 aaKnown RBP eCLIP16.17■□□□□ 0.18
DEPDC1-201ENST00000370966 TSPY4P0CV99 314 aa16.16■□□□□ 0.18
DEPDC1-201ENST00000370966 TSPY10P0CW01 314 aa16.16■□□□□ 0.18
DEPDC1-201ENST00000370966 CANXP27824 592 aaKnown RBP16.16■□□□□ 0.18
DEPDC1-201ENST00000370966 FKBP8Q14318 412 aa16.16■□□□□ 0.18
DEPDC1-201ENST00000370966 ZBTB47Q9UFB7 747 aaPredicted RBP16.16■□□□□ 0.18
DEPDC1-201ENST00000370966 CECR2Q9BXF3 1484 aa16.14■□□□□ 0.17
DEPDC1-201ENST00000370966 MIER1Q8N108 512 aa16.11■□□□□ 0.17
DEPDC1-201ENST00000370966 ANP32AP39687 249 aaKnown RBP16.11■□□□□ 0.17
DEPDC1-201ENST00000370966 CHMP7Q8WUX9 453 aaPredicted RBP16.09■□□□□ 0.17
DEPDC1-201ENST00000370966 FAM9BQ8IZU0 186 aa16.08■□□□□ 0.17
DEPDC1-201ENST00000370966 NPM1P06748 294 aaKnown RBP eCLIP16.07■□□□□ 0.16
DEPDC1-201ENST00000370966 TMC1Q8TDI8 760 aa16.06■□□□□ 0.16
DEPDC1-201ENST00000370966 EIF4G2P78344 907 aaKnown RBP eCLIP16.05■□□□□ 0.16
DEPDC1-201ENST00000370966 MRS2Q9HD23 443 aa16.02■□□□□ 0.16
DEPDC1-201ENST00000370966 RRP7BPQ9NSQ0 103 aa16.01■□□□□ 0.15
DEPDC1-201ENST00000370966 CHGAP10645 457 aaKnown RBP16.01■□□□□ 0.15
DEPDC1-201ENST00000370966 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16■□□□□ 0.15
DEPDC1-201ENST00000370966 SCAF1Q9H7N4 1312 aaKnown RBP15.99■□□□□ 0.15
DEPDC1-201ENST00000370966 PLEKHD1A6NEE1 506 aa15.98■□□□□ 0.15
DEPDC1-201ENST00000370966 ESF1Q9H501 851 aaKnown RBP15.98■□□□□ 0.15
DEPDC1-201ENST00000370966 MROH2BQ7Z745 1585 aa15.96■□□□□ 0.15
DEPDC1-201ENST00000370966 KDM2AQ9Y2K7 1162 aa15.95■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms