RNA–Protein interactions for RNA: ENST00000369603.9

SMNDC1-202, Transcript of survival motor neuron domain containing 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMNDC1, Length 4,341 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMNDC1-202ENST00000369603 NISCHQ9Y2I1 1504 aa10.33□□□□□ -0.76
SMNDC1-202ENST00000369603 DCAF8L2P0C7V8 631 aa9.42□□□□□ -0.9
SMNDC1-202ENST00000369603 SHROOM4Q9ULL8 1493 aa9.08□□□□□ -0.96
SMNDC1-202ENST00000369603 SUPT5HO00267 1087 aaKnown RBP9.04□□□□□ -0.96
SMNDC1-202ENST00000369603 CCDC180Q9P1Z9 1646 aa8.75□□□□□ -1.01
SMNDC1-202ENST00000369603 ZCCHC6Q5VYS8 1495 aaKnown RBP8.63□□□□□ -1.03
SMNDC1-202ENST00000369603 ABCC9O60706 1549 aa8.56□□□□□ -1.04
SMNDC1-202ENST00000369603 TRIM41Q8WV44 630 aa8.48□□□□□ -1.05
SMNDC1-202ENST00000369603 FAM9AQ8IZU1 332 aaPredicted RBP8.41□□□□□ -1.06
SMNDC1-202ENST00000369603 DCAF1Q9Y4B6 1507 aa8.4□□□□□ -1.06
SMNDC1-202ENST00000369603 CHIC1Q5VXU3 224 aa8.4□□□□□ -1.06
SMNDC1-202ENST00000369603 EHMT2Q96KQ7 1210 aa8.39□□□□□ -1.07
SMNDC1-202ENST00000369603 SCRIBQ14160 1630 aa8.34□□□□□ -1.07
SMNDC1-202ENST00000369603 NACADO15069 1562 aa8.32□□□□□ -1.08
SMNDC1-202ENST00000369603 APLP2Q06481 763 aa8.32□□□□□ -1.08
SMNDC1-202ENST00000369603 RB1CC1Q8TDY2 1594 aa8.29□□□□□ -1.08
SMNDC1-202ENST00000369603 PABPN1Q86U42 306 aaKnown RBP eCLIP8.28□□□□□ -1.08
SMNDC1-202ENST00000369603 PCGF6Q9BYE7 350 aa8.27□□□□□ -1.09
SMNDC1-202ENST00000369603 UBTFP17480 764 aaKnown RBP8.23□□□□□ -1.09
SMNDC1-202ENST00000369603 MYO15BQ96JP2 1530 aa8.22□□□□□ -1.09
SMNDC1-202ENST00000369603 LOC105371045A0A1W2PR82 267 aa8.17□□□□□ -1.1
SMNDC1-202ENST00000369603 ZEB1P37275 1124 aaPredicted RBP8.17□□□□□ -1.1
SMNDC1-202ENST00000369603 RSF1Q96T23 1441 aaPredicted RBP8.15□□□□□ -1.11
SMNDC1-202ENST00000369603 TRIM26Q12899 539 aaPredicted RBP8.14□□□□□ -1.11
SMNDC1-202ENST00000369603 HRCP23327 699 aa8.12□□□□□ -1.11
SMNDC1-202ENST00000369603 RANGAP1P46060 587 aaPredicted RBP8.11□□□□□ -1.11
SMNDC1-202ENST00000369603 TTBK1Q5TCY1 1321 aaPredicted RBP8.1□□□□□ -1.11
SMNDC1-202ENST00000369603 BAZ1AQ9NRL2 1556 aaPredicted RBP8.07□□□□□ -1.12
SMNDC1-202ENST00000369603 CCER1Q8TC90 406 aaPredicted RBP8.05□□□□□ -1.12
SMNDC1-202ENST00000369603 PELP1Q8IZL8 1130 aaKnown RBP8.02□□□□□ -1.13
SMNDC1-202ENST00000369603 CECR2Q9BXF3 1484 aa8.01□□□□□ -1.13
SMNDC1-202ENST00000369603 ATP1B4Q9UN42 357 aaPredicted RBP8.01□□□□□ -1.13
SMNDC1-202ENST00000369603 CSRNP3Q8WYN3 585 aa8□□□□□ -1.13
SMNDC1-202ENST00000369603 PPARGC1BQ86YN6 1023 aaKnown RBP7.99□□□□□ -1.13
SMNDC1-202ENST00000369603 MROH2BQ7Z745 1585 aa7.96□□□□□ -1.14
SMNDC1-202ENST00000369603 BAZ1BQ9UIG0 1483 aaKnown RBP7.95□□□□□ -1.14
SMNDC1-202ENST00000369603 EEA1Q15075 1411 aa7.93□□□□□ -1.14
SMNDC1-202ENST00000369603 SMARCA2P51531 1590 aa7.88□□□□□ -1.15
SMNDC1-202ENST00000369603 WRNQ14191 1432 aaPredicted RBP eCLIP7.88□□□□□ -1.15
SMNDC1-202ENST00000369603 TOP2AP11388 1531 aaKnown RBP7.87□□□□□ -1.15
SMNDC1-202ENST00000369603 WIZO95785 1651 aa7.86□□□□□ -1.15
SMNDC1-202ENST00000369603 HNRNPUL2Q1KMD3 747 aaKnown RBP7.85□□□□□ -1.15
SMNDC1-202ENST00000369603 CCDC88BA6NC98 1476 aa7.85□□□□□ -1.15
SMNDC1-202ENST00000369603 SMARCA4P51532 1647 aa7.85□□□□□ -1.15
SMNDC1-202ENST00000369603 CENPBP07199 599 aaPredicted RBP7.83□□□□□ -1.16
SMNDC1-202ENST00000369603 GOLGA3Q08378 1498 aa7.81□□□□□ -1.16
SMNDC1-202ENST00000369603 ITGAEP38570 1179 aa7.81□□□□□ -1.16
SMNDC1-202ENST00000369603 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP7.8□□□□□ -1.16
SMNDC1-202ENST00000369603 ATAD2BQ9ULI0 1458 aa7.78□□□□□ -1.16
SMNDC1-202ENST00000369603 TNIKQ9UKE5 1360 aa7.78□□□□□ -1.16
SMNDC1-202ENST00000369603 CEP164Q9UPV0 1460 aa7.78□□□□□ -1.16
SMNDC1-202ENST00000369603 MYT1Q01538 1121 aa7.78□□□□□ -1.16
SMNDC1-202ENST00000369603 KIF27Q86VH2 1401 aa7.77□□□□□ -1.17
SMNDC1-202ENST00000369603 CLIP1P30622 1438 aa7.77□□□□□ -1.17
SMNDC1-202ENST00000369603 CEP162Q5TB80 1403 aa7.76□□□□□ -1.17
SMNDC1-202ENST00000369603 FAM50AQ14320 339 aaKnown RBP7.74□□□□□ -1.17
SMNDC1-202ENST00000369603 ABCC8Q09428 1581 aa7.73□□□□□ -1.17
SMNDC1-202ENST00000369603 SOGA1O94964 1423 aa7.71□□□□□ -1.17
SMNDC1-202ENST00000369603 P3H3Q8IVL6 736 aa7.71□□□□□ -1.18
SMNDC1-202ENST00000369603 FBLN2P98095 1184 aa7.69□□□□□ -1.18
SMNDC1-202ENST00000369603 YTHDC1Q96MU7 727 aaKnown RBP7.68□□□□□ -1.18
SMNDC1-202ENST00000369603 CADPSQ9ULU8 1353 aa7.67□□□□□ -1.18
SMNDC1-202ENST00000369603 NCAPD3P42695 1498 aa7.67□□□□□ -1.18
SMNDC1-202ENST00000369603 CDK11AQ9UQ88 783 aaPredicted RBP7.67□□□□□ -1.18
SMNDC1-202ENST00000369603 CUX2O14529 1486 aa7.65□□□□□ -1.19
SMNDC1-202ENST00000369603 DIEXFQ68CQ4 756 aaKnown RBP7.65□□□□□ -1.19
SMNDC1-202ENST00000369603 EIF4G1Q04637 1599 aaKnown RBP7.64□□□□□ -1.19
SMNDC1-202ENST00000369603 PDS5BQ9NTI5 1447 aa7.64□□□□□ -1.19
SMNDC1-202ENST00000369603 CARMIL1Q5VZK9 1371 aa7.63□□□□□ -1.19
SMNDC1-202ENST00000369603 BICRAQ9NZM4 1560 aa7.62□□□□□ -1.19
SMNDC1-202ENST00000369603 TRIM52Q96A61 297 aa7.62□□□□□ -1.19
SMNDC1-202ENST00000369603 ZNF316A6NFI3 1004 aaPredicted RBP7.6□□□□□ -1.19
SMNDC1-202ENST00000369603 VPS8Q8N3P4 1428 aa7.6□□□□□ -1.19
SMNDC1-202ENST00000369603 MYT1LQ9UL68 1186 aa7.6□□□□□ -1.19
SMNDC1-202ENST00000369603 MTUS2Q5JR59 1369 aa7.6□□□□□ -1.19
SMNDC1-202ENST00000369603 HMGXB3Q12766 1538 aa7.6□□□□□ -1.19
SMNDC1-202ENST00000369603 FHAD1B1AJZ9 1412 aa7.59□□□□□ -1.19
SMNDC1-202ENST00000369603 CHMP7Q8WUX9 453 aaPredicted RBP7.59□□□□□ -1.19
SMNDC1-202ENST00000369603 GTF3C3Q9Y5Q9 886 aa7.59□□□□□ -1.19
SMNDC1-202ENST00000369603 SCAF1Q9H7N4 1312 aaKnown RBP7.58□□□□□ -1.2
SMNDC1-202ENST00000369603 NEUROD1Q13562 356 aa7.58□□□□□ -1.2
SMNDC1-202ENST00000369603 ERCC6Q03468 1493 aa7.57□□□□□ -1.2
SMNDC1-202ENST00000369603 ACIN1Q9UKV3 1341 aaKnown RBP7.57□□□□□ -1.2
SMNDC1-202ENST00000369603 UNC13AQ9UPW8 1703 aa7.57□□□□□ -1.2
SMNDC1-202ENST00000369603 PEG3Q9GZU2 1588 aa7.56□□□□□ -1.2
SMNDC1-202ENST00000369603 FANCD2Q9BXW9 1451 aa7.56□□□□□ -1.2
SMNDC1-202ENST00000369603 ARID3CA6NKF2 412 aa7.56□□□□□ -1.2
SMNDC1-202ENST00000369603 NEFLP07196 543 aa7.56□□□□□ -1.2
SMNDC1-202ENST00000369603 CFTRP13569 1480 aa7.54□□□□□ -1.2
SMNDC1-202ENST00000369603 RAPGEF2Q9Y4G8 1499 aa7.54□□□□□ -1.2
SMNDC1-202ENST00000369603 RUSC2Q8N2Y8 1516 aa7.54□□□□□ -1.2
SMNDC1-202ENST00000369603 ZNF777Q9ULD5 760 aaPredicted RBP7.51□□□□□ -1.21
SMNDC1-202ENST00000369603 CLSPNQ9HAW4 1339 aa7.51□□□□□ -1.21
SMNDC1-202ENST00000369603 TDRD9Q8NDG6 1382 aaKnown RBP7.5□□□□□ -1.21
SMNDC1-202ENST00000369603 CCNB3Q8WWL7 1395 aa7.5□□□□□ -1.21
SMNDC1-202ENST00000369603 TONSLQ96HA7 1378 aa7.5□□□□□ -1.21
SMNDC1-202ENST00000369603 FMN1Q68DA7 1419 aa7.49□□□□□ -1.21
SMNDC1-202ENST00000369603 SYNJ1O43426 1573 aa7.49□□□□□ -1.21
SMNDC1-202ENST00000369603 KIF21BO75037 1637 aa7.49□□□□□ -1.21
SMNDC1-202ENST00000369603 FGD5Q6ZNL6 1462 aa7.49□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 7.9 ms