RNA–Protein interactions for RNA: ENST00000364738.1

RNU4-42P-201, Transcript of RNA, U4 small nuclear 42, pseudogene, humanhuman

BASIC

Gene RNU4-42P, Length 142 nt, Biotype snRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-42P-201ENST00000364738 AEBP2Q6ZN18 517 aaPredicted RBP17.29■□□□□ 0.36
RNU4-42P-201ENST00000364738 CHIC1Q5VXU3 224 aa16.54■□□□□ 0.24
RNU4-42P-201ENST00000364738 SENP3Q9H4L4 574 aaPredicted RBP14.77□□□□□ -0.05
RNU4-42P-201ENST00000364738 PHF23Q9BUL5 403 aaPredicted RBP14.57□□□□□ -0.08
RNU4-42P-201ENST00000364738 FOXD1Q16676 465 aa13.72□□□□□ -0.21
RNU4-42P-201ENST00000364738 PLPPR3Q6T4P5 718 aa13.28□□□□□ -0.28
RNU4-42P-201ENST00000364738 PPP6R1Q9UPN7 881 aa12.91□□□□□ -0.34
RNU4-42P-201ENST00000364738 ADRA2BP18089 450 aa12.89□□□□□ -0.35
RNU4-42P-201ENST00000364738 PIAS4Q8N2W9 510 aaPredicted RBP12.89□□□□□ -0.35
RNU4-42P-201ENST00000364738 MSH5O43196 834 aa12.82□□□□□ -0.36
RNU4-42P-201ENST00000364738 POTEDQ86YR6 584 aa12.31□□□□□ -0.44
RNU4-42P-201ENST00000364738 SCAF1Q9H7N4 1312 aaKnown RBP11.8□□□□□ -0.52
RNU4-42P-201ENST00000364738 MAPK8IP2Q13387 824 aaPredicted RBP11.79□□□□□ -0.52
RNU4-42P-201ENST00000364738 DMRT2Q9Y5R5 561 aa11.72□□□□□ -0.53
RNU4-42P-201ENST00000364738 PPP4R3CPQ6ZMV5 832 aa11.64□□□□□ -0.55
RNU4-42P-201ENST00000364738 CNKSR2Q8WXI2 1034 aa11.4□□□□□ -0.58
RNU4-42P-201ENST00000364738 HOXD11P31277 338 aaPredicted RBP11.31□□□□□ -0.6
RNU4-42P-201ENST00000364738 DCAF8L1A6NGE4 600 aa11.28□□□□□ -0.6
RNU4-42P-201ENST00000364738 RNF216Q9NWF9 866 aaPredicted RBP11.27□□□□□ -0.61
RNU4-42P-201ENST00000364738 NCBP3Q53F19 620 aaKnown RBP11.25□□□□□ -0.61
RNU4-42P-201ENST00000364738 NPM3O75607 178 aaKnown RBP11.08□□□□□ -0.64
RNU4-42P-201ENST00000364738 KCNA4P22459 653 aa10.97□□□□□ -0.65
RNU4-42P-201ENST00000364738 CACNB1Q02641 598 aaPredicted RBP10.94□□□□□ -0.66
RNU4-42P-201ENST00000364738 RNF39Q9H2S5 420 aa10.94□□□□□ -0.66
RNU4-42P-201ENST00000364738 DNAJC5BQ9UF47 199 aa10.88□□□□□ -0.67
RNU4-42P-201ENST00000364738 GRWD1Q9BQ67 446 aaKnown RBP eCLIP10.82□□□□□ -0.68
RNU4-42P-201ENST00000364738 C1QBPQ07021 282 aaKnown RBP10.79□□□□□ -0.68
RNU4-42P-201ENST00000364738 U3KPZ7 1027 aaPredicted RBP10.59□□□□□ -0.71
RNU4-42P-201ENST00000364738 SLC4A2P04920 1241 aa10.53□□□□□ -0.72
RNU4-42P-201ENST00000364738 CAPN15O75808 1086 aa10.4□□□□□ -0.74
RNU4-42P-201ENST00000364738 SPINK5Q9NQ38 1064 aaPredicted RBP10.4□□□□□ -0.74
RNU4-42P-201ENST00000364738 SLC4A1APQ9BWU0 796 aaKnown RBP10.39□□□□□ -0.75
RNU4-42P-201ENST00000364738 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.34□□□□□ -0.75
RNU4-42P-201ENST00000364738 HNRNPUL2Q1KMD3 747 aaKnown RBP10.34□□□□□ -0.75
RNU4-42P-201ENST00000364738 APLP2Q06481 763 aa10.33□□□□□ -0.76
RNU4-42P-201ENST00000364738 DSG3P32926 999 aa10.28□□□□□ -0.76
RNU4-42P-201ENST00000364738 SAMD1Q6SPF0 538 aaPredicted RBP10.28□□□□□ -0.76
RNU4-42P-201ENST00000364738 MYCNP04198 464 aaPredicted RBP10.26□□□□□ -0.77
RNU4-42P-201ENST00000364738 TRHP20396 242 aaPredicted RBP10.26□□□□□ -0.77
RNU4-42P-201ENST00000364738 ZNF219Q9P2Y4 722 aaPredicted RBP10.24□□□□□ -0.77
RNU4-42P-201ENST00000364738 FOXD4L1Q9NU39 408 aa10.21□□□□□ -0.77
RNU4-42P-201ENST00000364738 ABCB7O75027 752 aa10.17□□□□□ -0.78
RNU4-42P-201ENST00000364738 ZBTB22O15209 634 aa10.08□□□□□ -0.8
RNU4-42P-201ENST00000364738 POLA2Q14181 598 aa9.99□□□□□ -0.81
RNU4-42P-201ENST00000364738 ATF5Q9Y2D1 282 aaPredicted RBP9.98□□□□□ -0.81
RNU4-42P-201ENST00000364738 ATXN8OSP0DMR3 200 aa9.87□□□□□ -0.83
RNU4-42P-201ENST00000364738 RBM42Q9BTD8 480 aaKnown RBP9.84□□□□□ -0.83
RNU4-42P-201ENST00000364738 ZBTB12Q9Y330 459 aaPredicted RBP9.83□□□□□ -0.84
RNU4-42P-201ENST00000364738 CSRNP3Q8WYN3 585 aa9.7□□□□□ -0.86
RNU4-42P-201ENST00000364738 OSCARQ8IYS5 282 aa9.69□□□□□ -0.86
RNU4-42P-201ENST00000364738 EHMT2Q96KQ7 1210 aa9.69□□□□□ -0.86
RNU4-42P-201ENST00000364738 POTEHQ6S545 545 aa9.68□□□□□ -0.86
RNU4-42P-201ENST00000364738 FBLN2P98095 1184 aa9.63□□□□□ -0.87
RNU4-42P-201ENST00000364738 AKT1S1Q96B36 256 aa9.62□□□□□ -0.87
RNU4-42P-201ENST00000364738 CHRDL2Q6WN34 429 aa9.57□□□□□ -0.88
RNU4-42P-201ENST00000364738 MKRN4PQ13434 485 aaPredicted RBP9.54□□□□□ -0.88
RNU4-42P-201ENST00000364738 REM2Q8IYK8 340 aaPredicted RBP9.52□□□□□ -0.89
RNU4-42P-201ENST00000364738 SPDYE2BA6NHP3 402 aa9.51□□□□□ -0.89
RNU4-42P-201ENST00000364738 SPDYE6P0CI01 402 aa9.51□□□□□ -0.89
RNU4-42P-201ENST00000364738 SPDYE2Q495Y8 402 aa9.51□□□□□ -0.89
RNU4-42P-201ENST00000364738 PITPNM1O00562 1244 aa9.44□□□□□ -0.9
RNU4-42P-201ENST00000364738 ZNF692Q9BU19 519 aaPredicted RBP9.42□□□□□ -0.9
RNU4-42P-201ENST00000364738 SSUH2Q9Y2M2 353 aa9.38□□□□□ -0.91
RNU4-42P-201ENST00000364738 PIP4P2Q8N4L2 257 aa9.35□□□□□ -0.91
RNU4-42P-201ENST00000364738 SPDYE1Q8NFV5 336 aaPredicted RBP9.33□□□□□ -0.92
RNU4-42P-201ENST00000364738 CLEC11AQ9Y240 323 aa9.31□□□□□ -0.92
RNU4-42P-201ENST00000364738 FXR2P51116 673 aaKnown RBP eCLIP9.3□□□□□ -0.92
RNU4-42P-201ENST00000364738 PABPN1Q86U42 306 aaKnown RBP eCLIP9.28□□□□□ -0.92
RNU4-42P-201ENST00000364738 PRKAR2AP13861 404 aaKnown RBP9.19□□□□□ -0.94
RNU4-42P-201ENST00000364738 SPDYE4A6NLX3 237 aa9.17□□□□□ -0.94
RNU4-42P-201ENST00000364738 HAX1O00165 279 aa9.17□□□□□ -0.94
RNU4-42P-201ENST00000364738 PRR29P0C7W0 189 aa9.16□□□□□ -0.94
RNU4-42P-201ENST00000364738 SP7Q8TDD2 431 aaPredicted RBP9.13□□□□□ -0.95
RNU4-42P-201ENST00000364738 CHADLQ6NUI6 762 aa9.11□□□□□ -0.95
RNU4-42P-201ENST00000364738 STAG3Q9UJ98 1225 aa9.05□□□□□ -0.96
RNU4-42P-201ENST00000364738 EVX2Q03828 476 aa9.03□□□□□ -0.96
RNU4-42P-201ENST00000364738 C19orf67A6NJJ6 358 aa9□□□□□ -0.97
RNU4-42P-201ENST00000364738 FARP1Q9Y4F1 1045 aaPredicted RBP8.98□□□□□ -0.97
RNU4-42P-201ENST00000364738 CREBZFQ9NS37 354 aa8.94□□□□□ -0.98
RNU4-42P-201ENST00000364738 PROM2Q8N271 834 aa8.93□□□□□ -0.98
RNU4-42P-201ENST00000364738 CD44P16070 742 aaKnown RBP8.91□□□□□ -0.98
RNU4-42P-201ENST00000364738 GABBR2O75899 941 aa8.84□□□□□ -0.99
RNU4-42P-201ENST00000364738 FKBP8Q14318 412 aa8.83□□□□□ -1
RNU4-42P-201ENST00000364738 NPM1P06748 294 aaKnown RBP eCLIP8.8□□□□□ -1
RNU4-42P-201ENST00000364738 ZRANB1Q9UGI0 708 aa8.8□□□□□ -1
RNU4-42P-201ENST00000364738 MNX1P50219 401 aaPredicted RBP8.79□□□□□ -1
RNU4-42P-201ENST00000364738 PAK3O75914 559 aaPredicted RBP8.78□□□□□ -1
RNU4-42P-201ENST00000364738 ZNF579Q8NAF0 562 aaKnown RBP8.77□□□□□ -1.01
RNU4-42P-201ENST00000364738 PLEKHG5O94827 1062 aa8.74□□□□□ -1.01
RNU4-42P-201ENST00000364738 CLCN6P51797 869 aa8.74□□□□□ -1.01
RNU4-42P-201ENST00000364738 MIER1Q8N108 512 aa8.74□□□□□ -1.01
RNU4-42P-201ENST00000364738 PLCD3Q8N3E9 789 aa8.69□□□□□ -1.02
RNU4-42P-201ENST00000364738 PHF12Q96QT6 1004 aa8.69□□□□□ -1.02
RNU4-42P-201ENST00000364738 GALR2O43603 387 aaPredicted RBP8.66□□□□□ -1.02
RNU4-42P-201ENST00000364738 DCBLD2Q96PD2 775 aa8.66□□□□□ -1.02
RNU4-42P-201ENST00000364738 TSPYL2Q9H2G4 693 aaPredicted RBP8.66□□□□□ -1.02
RNU4-42P-201ENST00000364738 POTEIP0CG38 1075 aa8.65□□□□□ -1.02
RNU4-42P-201ENST00000364738 ZBTB47Q9UFB7 747 aaPredicted RBP8.62□□□□□ -1.03
RNU4-42P-201ENST00000364738 FBXO3Q9UK99 471 aa8.61□□□□□ -1.03
RNU4-42P-201ENST00000364738 RASEFQ8IZ41 740 aa8.59□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 6.8 ms