RNA–Protein interactions for RNA: ENST00000361587.3

HIPK1-202, Transcript of homeodomain interacting protein kinase 1, humanhuman

TSL 1 (best)

Gene HIPK1, Length 5,766 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIPK1-202ENST00000361587 DCAF8L2P0C7V8 631 aa17.78■□□□□ 0.44
HIPK1-202ENST00000361587 PELP1Q8IZL8 1130 aaKnown RBP17.13■□□□□ 0.33
HIPK1-202ENST00000361587 SUPT5HO00267 1087 aaKnown RBP17■□□□□ 0.31
HIPK1-202ENST00000361587 NISCHQ9Y2I1 1504 aa16.99■□□□□ 0.31
HIPK1-202ENST00000361587 APLP2Q06481 763 aa16.59■□□□□ 0.25
HIPK1-202ENST00000361587 SHROOM4Q9ULL8 1493 aa16.52■□□□□ 0.23
HIPK1-202ENST00000361587 EHMT2Q96KQ7 1210 aa16.41■□□□□ 0.22
HIPK1-202ENST00000361587 FAM9AQ8IZU1 332 aaPredicted RBP16.39■□□□□ 0.21
HIPK1-202ENST00000361587 CCER1Q8TC90 406 aaPredicted RBP16.34■□□□□ 0.21
HIPK1-202ENST00000361587 ERICH6Q7L0X2 663 aa16.3■□□□□ 0.2
HIPK1-202ENST00000361587 CENPBP07199 599 aaPredicted RBP16.28■□□□□ 0.2
HIPK1-202ENST00000361587 ZEB1P37275 1124 aaPredicted RBP16.24■□□□□ 0.19
HIPK1-202ENST00000361587 MYT1Q01538 1121 aa16.12■□□□□ 0.17
HIPK1-202ENST00000361587 PCGF6Q9BYE7 350 aa16.07■□□□□ 0.16
HIPK1-202ENST00000361587 NEFLP07196 543 aa15.95■□□□□ 0.14
HIPK1-202ENST00000361587 TTBK1Q5TCY1 1321 aaPredicted RBP15.94■□□□□ 0.14
HIPK1-202ENST00000361587 TRIM41Q8WV44 630 aa15.85■□□□□ 0.13
HIPK1-202ENST00000361587 ATP1B4Q9UN42 357 aaPredicted RBP15.74■□□□□ 0.11
HIPK1-202ENST00000361587 RANGAP1P46060 587 aaPredicted RBP15.73■□□□□ 0.11
HIPK1-202ENST00000361587 UBTFP17480 764 aaKnown RBP15.7■□□□□ 0.1
HIPK1-202ENST00000361587 YTHDC1Q96MU7 727 aaKnown RBP15.61■□□□□ 0.09
HIPK1-202ENST00000361587 DAXXQ9UER7 740 aaPredicted RBP15.57■□□□□ 0.08
HIPK1-202ENST00000361587 TRIM26Q12899 539 aaPredicted RBP15.49■□□□□ 0.07
HIPK1-202ENST00000361587 HRCP23327 699 aa15.32■□□□□ 0.04
HIPK1-202ENST00000361587 PPARGC1BQ86YN6 1023 aaKnown RBP15.23■□□□□ 0.03
HIPK1-202ENST00000361587 POLR3GLQ9BT43 218 aa15.23■□□□□ 0.03
HIPK1-202ENST00000361587 RTL5Q5HYW3 569 aaPredicted RBP15.22■□□□□ 0.03
HIPK1-202ENST00000361587 MYT1LQ9UL68 1186 aa15.21■□□□□ 0.02
HIPK1-202ENST00000361587 ZNF316A6NFI3 1004 aaPredicted RBP15.17■□□□□ 0.02
HIPK1-202ENST00000361587 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.17■□□□□ 0.02
HIPK1-202ENST00000361587 HNRNPUL2Q1KMD3 747 aaKnown RBP15.17■□□□□ 0.02
HIPK1-202ENST00000361587 ITGAEP38570 1179 aa15.17■□□□□ 0.02
HIPK1-202ENST00000361587 CLSPNQ9HAW4 1339 aa15.07■□□□□ 0
HIPK1-202ENST00000361587 DIEXFQ68CQ4 756 aaKnown RBP15.01□□□□□ -0.01
HIPK1-202ENST00000361587 SLC4A1APQ9BWU0 796 aaKnown RBP14.98□□□□□ -0.01
HIPK1-202ENST00000361587 CHIC1Q5VXU3 224 aa14.98□□□□□ -0.01
HIPK1-202ENST00000361587 CNGB1Q14028 1251 aaPredicted RBP14.94□□□□□ -0.02
HIPK1-202ENST00000361587 LOC105371045A0A1W2PR82 267 aa14.93□□□□□ -0.02
HIPK1-202ENST00000361587 ZBTB47Q9UFB7 747 aaPredicted RBP14.86□□□□□ -0.03
HIPK1-202ENST00000361587 CDK11AQ9UQ88 783 aaPredicted RBP14.85□□□□□ -0.03
HIPK1-202ENST00000361587 FAM50AQ14320 339 aaKnown RBP14.84□□□□□ -0.03
HIPK1-202ENST00000361587 ANP32CO43423 234 aa14.83□□□□□ -0.04
HIPK1-202ENST00000361587 TRIM52Q96A61 297 aa14.82□□□□□ -0.04
HIPK1-202ENST00000361587 NEUROD1Q13562 356 aa14.71□□□□□ -0.05
HIPK1-202ENST00000361587 GTF3C3Q9Y5Q9 886 aa14.71□□□□□ -0.05
HIPK1-202ENST00000361587 BCANQ96GW7 911 aa14.68□□□□□ -0.06
HIPK1-202ENST00000361587 CANXP27824 592 aaKnown RBP14.68□□□□□ -0.06
HIPK1-202ENST00000361587 NEFMP07197 916 aa14.66□□□□□ -0.06
HIPK1-202ENST00000361587 ANP32AP39687 249 aaKnown RBP14.65□□□□□ -0.06
HIPK1-202ENST00000361587 ZNF326Q5BKZ1 582 aaKnown RBP14.61□□□□□ -0.07
HIPK1-202ENST00000361587 ANP32BQ92688 251 aaKnown RBP14.55□□□□□ -0.08
HIPK1-202ENST00000361587 ACIN1Q9UKV3 1341 aaKnown RBP14.52□□□□□ -0.08
HIPK1-202ENST00000361587 SLC24A1O60721 1099 aa14.47□□□□□ -0.09
HIPK1-202ENST00000361587 UPF2Q9HAU5 1272 aaKnown RBP14.44□□□□□ -0.1
HIPK1-202ENST00000361587 GLIPR1L2Q4G1C9 344 aa14.41□□□□□ -0.1
HIPK1-202ENST00000361587 HSP90AA1P07900 732 aaKnown RBP14.39□□□□□ -0.11
HIPK1-202ENST00000361587 NPM2Q86SE8 214 aaKnown RBP14.39□□□□□ -0.11
HIPK1-202ENST00000361587 BCL11AQ9H165 835 aa14.37□□□□□ -0.11
HIPK1-202ENST00000361587 CCDC180Q9P1Z9 1646 aa14.37□□□□□ -0.11
HIPK1-202ENST00000361587 TONSLQ96HA7 1378 aa14.34□□□□□ -0.11
HIPK1-202ENST00000361587 CSRNP3Q8WYN3 585 aa14.34□□□□□ -0.11
HIPK1-202ENST00000361587 FBLN2P98095 1184 aa14.34□□□□□ -0.11
HIPK1-202ENST00000361587 EIF5BO60841 1220 aaKnown RBP14.32□□□□□ -0.12
HIPK1-202ENST00000361587 FKBP8Q14318 412 aa14.32□□□□□ -0.12
HIPK1-202ENST00000361587 PABPN1Q86U42 306 aaKnown RBP eCLIP14.32□□□□□ -0.12
HIPK1-202ENST00000361587 GOLGA6L2Q8N9W4 650 aaPredicted RBP14.31□□□□□ -0.12
HIPK1-202ENST00000361587 ABCC9O60706 1549 aa14.27□□□□□ -0.13
HIPK1-202ENST00000361587 HNRNPUQ00839 825 aaKnown RBP eCLIP14.26□□□□□ -0.13
HIPK1-202ENST00000361587 ZNF777Q9ULD5 760 aaPredicted RBP14.26□□□□□ -0.13
HIPK1-202ENST00000361587 ESF1Q9H501 851 aaKnown RBP14.24□□□□□ -0.13
HIPK1-202ENST00000361587 P3H3Q8IVL6 736 aa14.23□□□□□ -0.13
HIPK1-202ENST00000361587 ZCCHC6Q5VYS8 1495 aaKnown RBP14.21□□□□□ -0.13
HIPK1-202ENST00000361587 CCDC136Q96JN2 1154 aa14.21□□□□□ -0.14
HIPK1-202ENST00000361587 DCAF1Q9Y4B6 1507 aa14.2□□□□□ -0.14
HIPK1-202ENST00000361587 FAM9BQ8IZU0 186 aa14.18□□□□□ -0.14
HIPK1-202ENST00000361587 STAG3Q9UJ98 1225 aa14.18□□□□□ -0.14
HIPK1-202ENST00000361587 TMC1Q8TDI8 760 aa14.17□□□□□ -0.14
HIPK1-202ENST00000361587 WDR43Q15061 677 aaKnown RBP eCLIP14.16□□□□□ -0.14
HIPK1-202ENST00000361587 ARID3CA6NKF2 412 aa14.16□□□□□ -0.14
HIPK1-202ENST00000361587 DDX10Q13206 875 aaKnown RBP14.14□□□□□ -0.15
HIPK1-202ENST00000361587 ANP32EQ9BTT0 268 aa14.13□□□□□ -0.15
HIPK1-202ENST00000361587 CHGAP10645 457 aaKnown RBP14.13□□□□□ -0.15
HIPK1-202ENST00000361587 MYH16Q9H6N6 1097 aa14.12□□□□□ -0.15
HIPK1-202ENST00000361587 DDRGK1Q96HY6 314 aa14.12□□□□□ -0.15
HIPK1-202ENST00000361587 BECN1Q14457 450 aa14.08□□□□□ -0.16
HIPK1-202ENST00000361587 CDK11BP21127 795 aaKnown RBP14.08□□□□□ -0.16
HIPK1-202ENST00000361587 MRS2Q9HD23 443 aa14.07□□□□□ -0.16
HIPK1-202ENST00000361587 NBR1Q14596 966 aa14.07□□□□□ -0.16
HIPK1-202ENST00000361587 NPM1P06748 294 aaKnown RBP eCLIP14.06□□□□□ -0.16
HIPK1-202ENST00000361587 NCLP19338 710 aaKnown RBP14.05□□□□□ -0.16
HIPK1-202ENST00000361587 GOLGA6L22H0YM25 854 aa14.03□□□□□ -0.16
HIPK1-202ENST00000361587 SALL2Q9Y467 1007 aaPredicted RBP14.03□□□□□ -0.16
HIPK1-202ENST00000361587 TRIM44Q96DX7 344 aaPredicted RBP14.01□□□□□ -0.17
HIPK1-202ENST00000361587 TSPY4P0CV99 314 aa14.01□□□□□ -0.17
HIPK1-202ENST00000361587 TSPY10P0CW01 314 aa14.01□□□□□ -0.17
HIPK1-202ENST00000361587 EIF4G2P78344 907 aaKnown RBP eCLIP13.98□□□□□ -0.17
HIPK1-202ENST00000361587 MTUS2Q5JR59 1369 aa13.96□□□□□ -0.17
HIPK1-202ENST00000361587 ARXQ96QS3 562 aa13.96□□□□□ -0.17
HIPK1-202ENST00000361587 TNNT2P45379 298 aaPredicted RBP13.95□□□□□ -0.18
HIPK1-202ENST00000361587 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.95□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms