RNA–Protein interactions for RNA: ENST00000361339.9

IFT140-201, Transcript of intraflagellar transport 140, humanhuman

TSL 1 (best) BASIC

Gene IFT140, Length 2,987 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
IFT140-201ENST00000361339 NISCHQ9Y2I1 1504 aa33.67■■■□□ 2.98
IFT140-201ENST00000361339 SHROOM4Q9ULL8 1493 aa28.99■■■□□ 2.23
IFT140-201ENST00000361339 CCDC180Q9P1Z9 1646 aa28.48■■■□□ 2.15
IFT140-201ENST00000361339 ZCCHC6Q5VYS8 1495 aaKnown RBP28.43■■■□□ 2.14
IFT140-201ENST00000361339 DCAF8L2P0C7V8 631 aa28.34■■■□□ 2.13
IFT140-201ENST00000361339 SUPT5HO00267 1087 aaKnown RBP28.3■■■□□ 2.12
IFT140-201ENST00000361339 DCAF1Q9Y4B6 1507 aa27.41■■□□□ 1.98
IFT140-201ENST00000361339 CHIC1Q5VXU3 224 aa27.3■■□□□ 1.96
IFT140-201ENST00000361339 MYO15BQ96JP2 1530 aa27.26■■□□□ 1.95
IFT140-201ENST00000361339 SCRIBQ14160 1630 aa27.02■■□□□ 1.92
IFT140-201ENST00000361339 ABCC9O60706 1549 aa26.94■■□□□ 1.9
IFT140-201ENST00000361339 HRCP23327 699 aa26.81■■□□□ 1.88
IFT140-201ENST00000361339 PPARGC1BQ86YN6 1023 aaKnown RBP26.69■■□□□ 1.86
IFT140-201ENST00000361339 RSF1Q96T23 1441 aaPredicted RBP26.67■■□□□ 1.86
IFT140-201ENST00000361339 LOC105371045A0A1W2PR82 267 aa26.67■■□□□ 1.86
IFT140-201ENST00000361339 PCGF6Q9BYE7 350 aa26.62■■□□□ 1.85
IFT140-201ENST00000361339 CECR2Q9BXF3 1484 aa26.47■■□□□ 1.83
IFT140-201ENST00000361339 NACADO15069 1562 aa26.43■■□□□ 1.82
IFT140-201ENST00000361339 RB1CC1Q8TDY2 1594 aa26.42■■□□□ 1.82
IFT140-201ENST00000361339 MROH2BQ7Z745 1585 aa26.29■■□□□ 1.8
IFT140-201ENST00000361339 FAM9AQ8IZU1 332 aaPredicted RBP26.23■■□□□ 1.79
IFT140-201ENST00000361339 TRIM41Q8WV44 630 aa26.21■■□□□ 1.79
IFT140-201ENST00000361339 EHMT2Q96KQ7 1210 aa26.19■■□□□ 1.78
IFT140-201ENST00000361339 WIZO95785 1651 aa26.14■■□□□ 1.78
IFT140-201ENST00000361339 PABPN1Q86U42 306 aaKnown RBP eCLIP25.86■■□□□ 1.73
IFT140-201ENST00000361339 BAZ1AQ9NRL2 1556 aaPredicted RBP25.8■■□□□ 1.72
IFT140-201ENST00000361339 UNC13AQ9UPW8 1703 aa25.8■■□□□ 1.72
IFT140-201ENST00000361339 TRIM26Q12899 539 aaPredicted RBP25.71■■□□□ 1.71
IFT140-201ENST00000361339 SMARCA4P51532 1647 aa25.66■■□□□ 1.7
IFT140-201ENST00000361339 EIF4G1Q04637 1599 aaKnown RBP25.6■■□□□ 1.69
IFT140-201ENST00000361339 PELP1Q8IZL8 1130 aaKnown RBP25.6■■□□□ 1.69
IFT140-201ENST00000361339 CCDC88BA6NC98 1476 aa25.59■■□□□ 1.69
IFT140-201ENST00000361339 ABCC8Q09428 1581 aa25.58■■□□□ 1.69
IFT140-201ENST00000361339 TOP2AP11388 1531 aaKnown RBP25.57■■□□□ 1.68
IFT140-201ENST00000361339 BICRAQ9NZM4 1560 aa25.52■■□□□ 1.68
IFT140-201ENST00000361339 SCAF1Q9H7N4 1312 aaKnown RBP25.51■■□□□ 1.67
IFT140-201ENST00000361339 SMARCA2P51531 1590 aa25.5■■□□□ 1.67
IFT140-201ENST00000361339 SOGA1O94964 1423 aa25.32■■□□□ 1.64
IFT140-201ENST00000361339 TTBK1Q5TCY1 1321 aaPredicted RBP25.26■■□□□ 1.63
IFT140-201ENST00000361339 RUSC2Q8N2Y8 1516 aa25.25■■□□□ 1.63
IFT140-201ENST00000361339 ATAD2BQ9ULI0 1458 aa25.09■■□□□ 1.61
IFT140-201ENST00000361339 PEG3Q9GZU2 1588 aa25.05■■□□□ 1.6
IFT140-201ENST00000361339 ZEB1P37275 1124 aaPredicted RBP25.05■■□□□ 1.6
IFT140-201ENST00000361339 CSRNP3Q8WYN3 585 aa25.05■■□□□ 1.6
IFT140-201ENST00000361339 UBTFP17480 764 aaKnown RBP25.03■■□□□ 1.6
IFT140-201ENST00000361339 WRNQ14191 1432 aaPredicted RBP eCLIP25.02■■□□□ 1.6
IFT140-201ENST00000361339 CEP162Q5TB80 1403 aa25.02■■□□□ 1.6
IFT140-201ENST00000361339 BAZ1BQ9UIG0 1483 aaKnown RBP25■■□□□ 1.59
IFT140-201ENST00000361339 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.97■■□□□ 1.59
IFT140-201ENST00000361339 SYNJ1O43426 1573 aa24.96■■□□□ 1.59
IFT140-201ENST00000361339 TNIKQ9UKE5 1360 aa24.89■■□□□ 1.57
IFT140-201ENST00000361339 NEUROD1Q13562 356 aa24.87■■□□□ 1.57
IFT140-201ENST00000361339 RANGAP1P46060 587 aaPredicted RBP24.84■■□□□ 1.57
IFT140-201ENST00000361339 EEA1Q15075 1411 aa24.8■■□□□ 1.56
IFT140-201ENST00000361339 ACIN1Q9UKV3 1341 aaKnown RBP24.79■■□□□ 1.56
IFT140-201ENST00000361339 GTF3C3Q9Y5Q9 886 aa24.78■■□□□ 1.56
IFT140-201ENST00000361339 GOLGA3Q08378 1498 aa24.77■■□□□ 1.56
IFT140-201ENST00000361339 CCER1Q8TC90 406 aaPredicted RBP24.75■■□□□ 1.55
IFT140-201ENST00000361339 RAPGEF2Q9Y4G8 1499 aa24.65■■□□□ 1.54
IFT140-201ENST00000361339 CEP164Q9UPV0 1460 aa24.63■■□□□ 1.53
IFT140-201ENST00000361339 CLIP1P30622 1438 aa24.57■■□□□ 1.52
IFT140-201ENST00000361339 KIF21BO75037 1637 aa24.55■■□□□ 1.52
IFT140-201ENST00000361339 NCAPD3P42695 1498 aa24.54■■□□□ 1.52
IFT140-201ENST00000361339 TOP2BQ02880 1626 aa24.53■■□□□ 1.52
IFT140-201ENST00000361339 CENPBP07199 599 aaPredicted RBP24.48■■□□□ 1.51
IFT140-201ENST00000361339 DIEXFQ68CQ4 756 aaKnown RBP24.48■■□□□ 1.51
IFT140-201ENST00000361339 HNRNPUL2Q1KMD3 747 aaKnown RBP24.48■■□□□ 1.51
IFT140-201ENST00000361339 MYT1Q01538 1121 aa24.47■■□□□ 1.51
IFT140-201ENST00000361339 YTHDC1Q96MU7 727 aaKnown RBP24.46■■□□□ 1.51
IFT140-201ENST00000361339 HMGXB3Q12766 1538 aa24.46■■□□□ 1.51
IFT140-201ENST00000361339 CUX1P39880 1505 aa24.45■■□□□ 1.51
IFT140-201ENST00000361339 BIVM-ERCC5R4GMW8 1640 aa24.4■■□□□ 1.5
IFT140-201ENST00000361339 VPS8Q8N3P4 1428 aa24.38■■□□□ 1.49
IFT140-201ENST00000361339 CFTRP13569 1480 aa24.34■■□□□ 1.49
IFT140-201ENST00000361339 PRXQ9BXM0 1461 aa24.3■■□□□ 1.48
IFT140-201ENST00000361339 APLP2Q06481 763 aa24.29■■□□□ 1.48
IFT140-201ENST00000361339 KANK4Q5T7N3 995 aaPredicted RBP24.22■■□□□ 1.47
IFT140-201ENST00000361339 ARAP1Q96P48 1450 aa24.21■■□□□ 1.47
IFT140-201ENST00000361339 KIF27Q86VH2 1401 aa24.21■■□□□ 1.47
IFT140-201ENST00000361339 ERICH3Q5RHP9 1530 aa24.15■■□□□ 1.46
IFT140-201ENST00000361339 CADPSQ9ULU8 1353 aa24.14■■□□□ 1.45
IFT140-201ENST00000361339 CUX2O14529 1486 aa24.12■■□□□ 1.45
IFT140-201ENST00000361339 CC2D2AQ9P2K1 1620 aa24.12■■□□□ 1.45
IFT140-201ENST00000361339 IGF1RP08069 1367 aa24.06■■□□□ 1.44
IFT140-201ENST00000361339 FGD5Q6ZNL6 1462 aa24.04■■□□□ 1.44
IFT140-201ENST00000361339 ARHGAP35Q9NRY4 1499 aa24.03■■□□□ 1.44
IFT140-201ENST00000361339 NESP48681 1621 aa24■■□□□ 1.43
IFT140-201ENST00000361339 DNAJC5BQ9UF47 199 aa23.97■■□□□ 1.43
IFT140-201ENST00000361339 P3H3Q8IVL6 736 aa23.96■■□□□ 1.43
IFT140-201ENST00000361339 PRDM2Q13029 1718 aa23.96■■□□□ 1.43
IFT140-201ENST00000361339 ITGAEP38570 1179 aa23.96■■□□□ 1.43
IFT140-201ENST00000361339 ZNF316A6NFI3 1004 aaPredicted RBP23.95■■□□□ 1.42
IFT140-201ENST00000361339 CARMIL1Q5VZK9 1371 aa23.94■■□□□ 1.42
IFT140-201ENST00000361339 FANCD2Q9BXW9 1451 aa23.94■■□□□ 1.42
IFT140-201ENST00000361339 RAD54L2Q9Y4B4 1467 aa23.93■■□□□ 1.42
IFT140-201ENST00000361339 MIER1Q8N108 512 aa23.91■■□□□ 1.42
IFT140-201ENST00000361339 ATP1B4Q9UN42 357 aaPredicted RBP23.82■■□□□ 1.4
IFT140-201ENST00000361339 DHX57Q6P158 1386 aaKnown RBP23.81■■□□□ 1.4
IFT140-201ENST00000361339 POLA1P09884 1462 aaPredicted RBP23.77■■□□□ 1.4
IFT140-201ENST00000361339 RRBP1Q9P2E9 1410 aaKnown RBP23.76■■□□□ 1.39
Retrieved 100 of 20,778 RNA–protein pairs in 8.1 ms