RNA–Protein interactions for RNA: ENST00000358273.8

NF1-202, Transcript of neurofibromin 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene NF1, Length 12,425 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NF1-202ENST00000358273 PELP1Q8IZL8 1130 aaKnown RBP11.99□□□□□ -0.49
NF1-202ENST00000358273 MYT1Q01538 1121 aa11.85□□□□□ -0.51
NF1-202ENST00000358273 HRCP23327 699 aa11.12□□□□□ -0.63
NF1-202ENST00000358273 PCGF6Q9BYE7 350 aa11.09□□□□□ -0.63
NF1-202ENST00000358273 TTBK1Q5TCY1 1321 aaPredicted RBP11.04□□□□□ -0.64
NF1-202ENST00000358273 CENPBP07199 599 aaPredicted RBP10.99□□□□□ -0.65
NF1-202ENST00000358273 ERICH6Q7L0X2 663 aa10.97□□□□□ -0.65
NF1-202ENST00000358273 PPARGC1BQ86YN6 1023 aaKnown RBP10.9□□□□□ -0.66
NF1-202ENST00000358273 YTHDC1Q96MU7 727 aaKnown RBP10.9□□□□□ -0.67
NF1-202ENST00000358273 EHMT2Q96KQ7 1210 aa10.84□□□□□ -0.67
NF1-202ENST00000358273 ZEB1P37275 1124 aaPredicted RBP10.78□□□□□ -0.68
NF1-202ENST00000358273 SUPT5HO00267 1087 aaKnown RBP10.73□□□□□ -0.69
NF1-202ENST00000358273 SCAF1Q9H7N4 1312 aaKnown RBP10.71□□□□□ -0.69
NF1-202ENST00000358273 NISCHQ9Y2I1 1504 aa10.69□□□□□ -0.7
NF1-202ENST00000358273 GTF3C3Q9Y5Q9 886 aa10.61□□□□□ -0.71
NF1-202ENST00000358273 BCL11AQ9H165 835 aa10.61□□□□□ -0.71
NF1-202ENST00000358273 SHROOM4Q9ULL8 1493 aa10.58□□□□□ -0.72
NF1-202ENST00000358273 ACIN1Q9UKV3 1341 aaKnown RBP10.52□□□□□ -0.73
NF1-202ENST00000358273 CCER1Q8TC90 406 aaPredicted RBP10.47□□□□□ -0.73
NF1-202ENST00000358273 RANGAP1P46060 587 aaPredicted RBP10.45□□□□□ -0.74
NF1-202ENST00000358273 TRIM26Q12899 539 aaPredicted RBP10.42□□□□□ -0.74
NF1-202ENST00000358273 EIF5BO60841 1220 aaKnown RBP10.39□□□□□ -0.75
NF1-202ENST00000358273 NEFLP07196 543 aa10.35□□□□□ -0.75
NF1-202ENST00000358273 CCDC180Q9P1Z9 1646 aa10.35□□□□□ -0.75
NF1-202ENST00000358273 DIEXFQ68CQ4 756 aaKnown RBP10.33□□□□□ -0.76
NF1-202ENST00000358273 PRKCSHP14314 528 aaPredicted RBP10.32□□□□□ -0.76
NF1-202ENST00000358273 NEUROD1Q13562 356 aa10.31□□□□□ -0.76
NF1-202ENST00000358273 BCANQ96GW7 911 aa10.31□□□□□ -0.76
NF1-202ENST00000358273 DCAF8L2P0C7V8 631 aa10.28□□□□□ -0.76
NF1-202ENST00000358273 ANP32EQ9BTT0 268 aa10.26□□□□□ -0.77
NF1-202ENST00000358273 FAM9AQ8IZU1 332 aaPredicted RBP10.22□□□□□ -0.77
NF1-202ENST00000358273 RTL5Q5HYW3 569 aaPredicted RBP10.21□□□□□ -0.78
NF1-202ENST00000358273 DCAF1Q9Y4B6 1507 aa10.17□□□□□ -0.78
NF1-202ENST00000358273 MYO15BQ96JP2 1530 aa10.12□□□□□ -0.79
NF1-202ENST00000358273 DAXXQ9UER7 740 aaPredicted RBP10.09□□□□□ -0.79
NF1-202ENST00000358273 CLSPNQ9HAW4 1339 aa10.09□□□□□ -0.79
NF1-202ENST00000358273 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.08□□□□□ -0.8
NF1-202ENST00000358273 RTN4Q9NQC3 1192 aaKnown RBP10.07□□□□□ -0.8
NF1-202ENST00000358273 NBR1Q14596 966 aa10.06□□□□□ -0.8
NF1-202ENST00000358273 CSRNP3Q8WYN3 585 aa10.06□□□□□ -0.8
NF1-202ENST00000358273 GLIPR1L2Q4G1C9 344 aa10.05□□□□□ -0.8
NF1-202ENST00000358273 MYT1LQ9UL68 1186 aa10.05□□□□□ -0.8
NF1-202ENST00000358273 CHIC1Q5VXU3 224 aa10.05□□□□□ -0.8
NF1-202ENST00000358273 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.04□□□□□ -0.8
NF1-202ENST00000358273 LOC105371045A0A1W2PR82 267 aa10□□□□□ -0.81
NF1-202ENST00000358273 CCDC136Q96JN2 1154 aa9.99□□□□□ -0.81
NF1-202ENST00000358273 ZNF316A6NFI3 1004 aaPredicted RBP9.97□□□□□ -0.81
NF1-202ENST00000358273 AMER1Q5JTC6 1135 aaPredicted RBP9.95□□□□□ -0.82
NF1-202ENST00000358273 CNGB1Q14028 1251 aaPredicted RBP9.92□□□□□ -0.82
NF1-202ENST00000358273 ARXQ96QS3 562 aa9.9□□□□□ -0.83
NF1-202ENST00000358273 SLC24A1O60721 1099 aa9.89□□□□□ -0.83
NF1-202ENST00000358273 CDK11AQ9UQ88 783 aaPredicted RBP9.87□□□□□ -0.83
NF1-202ENST00000358273 APLP2Q06481 763 aa9.85□□□□□ -0.83
NF1-202ENST00000358273 NPM2Q86SE8 214 aaKnown RBP9.84□□□□□ -0.83
NF1-202ENST00000358273 DEKP35659 375 aaKnown RBP9.83□□□□□ -0.84
NF1-202ENST00000358273 TRIM41Q8WV44 630 aa9.82□□□□□ -0.84
NF1-202ENST00000358273 SUPT16HQ9Y5B9 1047 aaKnown RBP9.82□□□□□ -0.84
NF1-202ENST00000358273 FKBP8Q14318 412 aa9.79□□□□□ -0.84
NF1-202ENST00000358273 ANP32AP39687 249 aaKnown RBP9.79□□□□□ -0.84
NF1-202ENST00000358273 ITGAEP38570 1179 aa9.77□□□□□ -0.85
NF1-202ENST00000358273 A0A0U1RQG5 324 aaPredicted RBP9.76□□□□□ -0.85
NF1-202ENST00000358273 MIER1Q8N108 512 aa9.75□□□□□ -0.85
NF1-202ENST00000358273 ERICH6BQ5W0A0 696 aa9.75□□□□□ -0.85
NF1-202ENST00000358273 TSHZ2Q9NRE2 1034 aa9.74□□□□□ -0.85
NF1-202ENST00000358273 ARID4BQ4LE39 1312 aaPredicted RBP9.73□□□□□ -0.85
NF1-202ENST00000358273 PKNOX2Q96KN3 472 aa9.72□□□□□ -0.85
NF1-202ENST00000358273 ANO8Q9HCE9 1232 aaPredicted RBP9.72□□□□□ -0.85
NF1-202ENST00000358273 POLR3GLQ9BT43 218 aa9.71□□□□□ -0.85
NF1-202ENST00000358273 HNRNPUL2Q1KMD3 747 aaKnown RBP9.67□□□□□ -0.86
NF1-202ENST00000358273 ARID3AQ99856 593 aa9.66□□□□□ -0.86
NF1-202ENST00000358273 NEFMP07197 916 aa9.63□□□□□ -0.87
NF1-202ENST00000358273 RBM19Q9Y4C8 960 aaKnown RBP9.63□□□□□ -0.87
NF1-202ENST00000358273 NAP1L5Q96NT1 182 aaPredicted RBP9.63□□□□□ -0.87
NF1-202ENST00000358273 PODXL2Q9NZ53 605 aa9.63□□□□□ -0.87
NF1-202ENST00000358273 SALL2Q9Y467 1007 aaPredicted RBP9.62□□□□□ -0.87
NF1-202ENST00000358273 IRX6P78412 446 aaPredicted RBP9.61□□□□□ -0.87
NF1-202ENST00000358273 NOP58Q9Y2X3 529 aaKnown RBP9.61□□□□□ -0.87
NF1-202ENST00000358273 TIMELESSQ9UNS1 1208 aa9.55□□□□□ -0.88
NF1-202ENST00000358273 UBE2Q2Q8WVN8 375 aa9.55□□□□□ -0.88
NF1-202ENST00000358273 UBTFP17480 764 aaKnown RBP9.55□□□□□ -0.88
NF1-202ENST00000358273 KAT6BQ8WYB5 2073 aa9.54□□□□□ -0.88
NF1-202ENST00000358273 ZBTB47Q9UFB7 747 aaPredicted RBP9.54□□□□□ -0.88
NF1-202ENST00000358273 LAS1LQ9Y4W2 734 aaKnown RBP9.54□□□□□ -0.88
NF1-202ENST00000358273 ANP32CO43423 234 aa9.5□□□□□ -0.89
NF1-202ENST00000358273 VSIG10Q8N0Z9 540 aa9.49□□□□□ -0.89
NF1-202ENST00000358273 RSPH6AQ9H0K4 717 aa9.49□□□□□ -0.89
NF1-202ENST00000358273 CDK11BP21127 795 aaKnown RBP9.47□□□□□ -0.89
NF1-202ENST00000358273 TRIM52Q96A61 297 aa9.47□□□□□ -0.89
NF1-202ENST00000358273 ATP1B4Q9UN42 357 aaPredicted RBP9.45□□□□□ -0.9
NF1-202ENST00000358273 TNNT2P45379 298 aaPredicted RBP9.42□□□□□ -0.9
NF1-202ENST00000358273 HSP90AA1P07900 732 aaKnown RBP9.41□□□□□ -0.9
NF1-202ENST00000358273 PLEKHG5O94827 1062 aa9.4□□□□□ -0.9
NF1-202ENST00000358273 FANCIQ9NVI1 1328 aa9.39□□□□□ -0.91
NF1-202ENST00000358273 ZBTB7CA1YPR0 619 aa9.38□□□□□ -0.91
NF1-202ENST00000358273 HNRNPUQ00839 825 aaKnown RBP eCLIP9.38□□□□□ -0.91
NF1-202ENST00000358273 IL27Q8NEV9 243 aa9.38□□□□□ -0.91
NF1-202ENST00000358273 HSP90AA2PQ14568 343 aaPredicted RBP9.38□□□□□ -0.91
NF1-202ENST00000358273 ANP32BQ92688 251 aaKnown RBP9.35□□□□□ -0.91
NF1-202ENST00000358273 PPM1GO15355 546 aaPredicted RBP9.33□□□□□ -0.92
NF1-202ENST00000358273 SENP3-EIF4A1A0A087X0R7 540 aa9.32□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms