RNA–Protein interactions for RNA: ENST00000357235.5

CDC42SE1-201, Transcript of CDC42 small effector 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDC42SE1, Length 3,045 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42SE1-201ENST00000357235 NISCHQ9Y2I1 1504 aa15.89■□□□□ 0.13
CDC42SE1-201ENST00000357235 SHROOM4Q9ULL8 1493 aa14.22□□□□□ -0.13
CDC42SE1-201ENST00000357235 SUPT5HO00267 1087 aaKnown RBP14.09□□□□□ -0.15
CDC42SE1-201ENST00000357235 PELP1Q8IZL8 1130 aaKnown RBP13.87□□□□□ -0.19
CDC42SE1-201ENST00000357235 DCAF8L2P0C7V8 631 aa13.75□□□□□ -0.21
CDC42SE1-201ENST00000357235 PCGF6Q9BYE7 350 aa13.62□□□□□ -0.23
CDC42SE1-201ENST00000357235 HRCP23327 699 aa13.59□□□□□ -0.23
CDC42SE1-201ENST00000357235 CHIC1Q5VXU3 224 aa13.58□□□□□ -0.23
CDC42SE1-201ENST00000357235 MYO15BQ96JP2 1530 aa13.54□□□□□ -0.24
CDC42SE1-201ENST00000357235 MYT1Q01538 1121 aa13.49□□□□□ -0.25
CDC42SE1-201ENST00000357235 PPARGC1BQ86YN6 1023 aaKnown RBP13.48□□□□□ -0.25
CDC42SE1-201ENST00000357235 ZCCHC6Q5VYS8 1495 aaKnown RBP13.44□□□□□ -0.26
CDC42SE1-201ENST00000357235 LOC105371045A0A1W2PR82 267 aa13.37□□□□□ -0.27
CDC42SE1-201ENST00000357235 CCDC180Q9P1Z9 1646 aa13.34□□□□□ -0.27
CDC42SE1-201ENST00000357235 ABCC9O60706 1549 aa13.26□□□□□ -0.29
CDC42SE1-201ENST00000357235 EHMT2Q96KQ7 1210 aa13.15□□□□□ -0.3
CDC42SE1-201ENST00000357235 TRIM26Q12899 539 aaPredicted RBP13.11□□□□□ -0.31
CDC42SE1-201ENST00000357235 FAM9AQ8IZU1 332 aaPredicted RBP13.09□□□□□ -0.31
CDC42SE1-201ENST00000357235 SCAF1Q9H7N4 1312 aaKnown RBP13.08□□□□□ -0.31
CDC42SE1-201ENST00000357235 DCAF1Q9Y4B6 1507 aa13.08□□□□□ -0.32
CDC42SE1-201ENST00000357235 TRIM41Q8WV44 630 aa12.99□□□□□ -0.33
CDC42SE1-201ENST00000357235 ZEB1P37275 1124 aaPredicted RBP12.87□□□□□ -0.35
CDC42SE1-201ENST00000357235 TTBK1Q5TCY1 1321 aaPredicted RBP12.78□□□□□ -0.36
CDC42SE1-201ENST00000357235 RSF1Q96T23 1441 aaPredicted RBP12.77□□□□□ -0.37
CDC42SE1-201ENST00000357235 SCRIBQ14160 1630 aa12.74□□□□□ -0.37
CDC42SE1-201ENST00000357235 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.72□□□□□ -0.37
CDC42SE1-201ENST00000357235 CCER1Q8TC90 406 aaPredicted RBP12.69□□□□□ -0.38
CDC42SE1-201ENST00000357235 RB1CC1Q8TDY2 1594 aa12.67□□□□□ -0.38
CDC42SE1-201ENST00000357235 ACIN1Q9UKV3 1341 aaKnown RBP12.66□□□□□ -0.38
CDC42SE1-201ENST00000357235 NACADO15069 1562 aa12.62□□□□□ -0.39
CDC42SE1-201ENST00000357235 GTF3C3Q9Y5Q9 886 aa12.59□□□□□ -0.39
CDC42SE1-201ENST00000357235 NEUROD1Q13562 356 aa12.58□□□□□ -0.4
CDC42SE1-201ENST00000357235 CECR2Q9BXF3 1484 aa12.54□□□□□ -0.4
CDC42SE1-201ENST00000357235 PABPN1Q86U42 306 aaKnown RBP eCLIP12.52□□□□□ -0.4
CDC42SE1-201ENST00000357235 DIEXFQ68CQ4 756 aaKnown RBP12.51□□□□□ -0.41
CDC42SE1-201ENST00000357235 CENPBP07199 599 aaPredicted RBP12.5□□□□□ -0.41
CDC42SE1-201ENST00000357235 BCL11AQ9H165 835 aa12.48□□□□□ -0.41
CDC42SE1-201ENST00000357235 MROH2BQ7Z745 1585 aa12.45□□□□□ -0.42
CDC42SE1-201ENST00000357235 YTHDC1Q96MU7 727 aaKnown RBP12.44□□□□□ -0.42
CDC42SE1-201ENST00000357235 UBTFP17480 764 aaKnown RBP12.42□□□□□ -0.42
CDC42SE1-201ENST00000357235 WIZO95785 1651 aa12.38□□□□□ -0.43
CDC42SE1-201ENST00000357235 RANGAP1P46060 587 aaPredicted RBP12.32□□□□□ -0.44
CDC42SE1-201ENST00000357235 HNRNPUL2Q1KMD3 747 aaKnown RBP12.32□□□□□ -0.44
CDC42SE1-201ENST00000357235 PRKCSHP14314 528 aaPredicted RBP12.3□□□□□ -0.44
CDC42SE1-201ENST00000357235 ABCC8Q09428 1581 aa12.3□□□□□ -0.44
CDC42SE1-201ENST00000357235 CCDC88BA6NC98 1476 aa12.3□□□□□ -0.44
CDC42SE1-201ENST00000357235 CEP162Q5TB80 1403 aa12.29□□□□□ -0.44
CDC42SE1-201ENST00000357235 ZNF316A6NFI3 1004 aaPredicted RBP12.28□□□□□ -0.44
CDC42SE1-201ENST00000357235 SOGA1O94964 1423 aa12.27□□□□□ -0.44
CDC42SE1-201ENST00000357235 CSRNP3Q8WYN3 585 aa12.26□□□□□ -0.45
CDC42SE1-201ENST00000357235 UNC13AQ9UPW8 1703 aa12.26□□□□□ -0.45
CDC42SE1-201ENST00000357235 BICRAQ9NZM4 1560 aa12.24□□□□□ -0.45
CDC42SE1-201ENST00000357235 MIER1Q8N108 512 aa12.21□□□□□ -0.45
CDC42SE1-201ENST00000357235 ANP32EQ9BTT0 268 aa12.2□□□□□ -0.46
CDC42SE1-201ENST00000357235 BAZ1AQ9NRL2 1556 aaPredicted RBP12.19□□□□□ -0.46
CDC42SE1-201ENST00000357235 RUSC2Q8N2Y8 1516 aa12.19□□□□□ -0.46
CDC42SE1-201ENST00000357235 APLP2Q06481 763 aa12.18□□□□□ -0.46
CDC42SE1-201ENST00000357235 DNAJC5BQ9UF47 199 aa12.18□□□□□ -0.46
CDC42SE1-201ENST00000357235 TNIKQ9UKE5 1360 aa12.17□□□□□ -0.46
CDC42SE1-201ENST00000357235 WRNQ14191 1432 aaPredicted RBP eCLIP12.17□□□□□ -0.46
CDC42SE1-201ENST00000357235 ERICH6Q7L0X2 663 aa12.12□□□□□ -0.47
CDC42SE1-201ENST00000357235 EIF4G1Q04637 1599 aaKnown RBP12.1□□□□□ -0.47
CDC42SE1-201ENST00000357235 TOP2AP11388 1531 aaKnown RBP12.09□□□□□ -0.47
CDC42SE1-201ENST00000357235 GOLGA3Q08378 1498 aa12.07□□□□□ -0.48
CDC42SE1-201ENST00000357235 SMARCA2P51531 1590 aa12.05□□□□□ -0.48
CDC42SE1-201ENST00000357235 EEA1Q15075 1411 aa12.04□□□□□ -0.48
CDC42SE1-201ENST00000357235 CLIP1P30622 1438 aa12.03□□□□□ -0.48
CDC42SE1-201ENST00000357235 SMARCA4P51532 1647 aa12.02□□□□□ -0.49
CDC42SE1-201ENST00000357235 ITGAEP38570 1179 aa11.99□□□□□ -0.49
CDC42SE1-201ENST00000357235 CEP164Q9UPV0 1460 aa11.96□□□□□ -0.49
CDC42SE1-201ENST00000357235 VPS8Q8N3P4 1428 aa11.93□□□□□ -0.5
CDC42SE1-201ENST00000357235 TSHZ2Q9NRE2 1034 aa11.92□□□□□ -0.5
CDC42SE1-201ENST00000357235 RAPGEF2Q9Y4G8 1499 aa11.92□□□□□ -0.5
CDC42SE1-201ENST00000357235 CC2D2AQ9P2K1 1620 aa11.89□□□□□ -0.51
CDC42SE1-201ENST00000357235 KANK4Q5T7N3 995 aaPredicted RBP11.89□□□□□ -0.51
CDC42SE1-201ENST00000357235 SYNJ1O43426 1573 aa11.88□□□□□ -0.51
CDC42SE1-201ENST00000357235 SUPT16HQ9Y5B9 1047 aaKnown RBP11.87□□□□□ -0.51
CDC42SE1-201ENST00000357235 CLSPNQ9HAW4 1339 aa11.87□□□□□ -0.51
CDC42SE1-201ENST00000357235 BCANQ96GW7 911 aa11.85□□□□□ -0.51
CDC42SE1-201ENST00000357235 DHX57Q6P158 1386 aaKnown RBP11.84□□□□□ -0.51
CDC42SE1-201ENST00000357235 KCNH8Q96L42 1107 aa11.82□□□□□ -0.52
CDC42SE1-201ENST00000357235 KIF21BO75037 1637 aa11.82□□□□□ -0.52
CDC42SE1-201ENST00000357235 ATP1B4Q9UN42 357 aaPredicted RBP11.78□□□□□ -0.52
CDC42SE1-201ENST00000357235 BAZ1BQ9UIG0 1483 aaKnown RBP11.78□□□□□ -0.52
CDC42SE1-201ENST00000357235 HIRIP3Q9BW71 556 aaPredicted RBP11.75□□□□□ -0.53
CDC42SE1-201ENST00000357235 DDX10Q13206 875 aaKnown RBP11.75□□□□□ -0.53
CDC42SE1-201ENST00000357235 ATAD2BQ9ULI0 1458 aa11.74□□□□□ -0.53
CDC42SE1-201ENST00000357235 FAM50AQ14320 339 aaKnown RBP11.73□□□□□ -0.53
CDC42SE1-201ENST00000357235 FKBP8Q14318 412 aa11.72□□□□□ -0.53
CDC42SE1-201ENST00000357235 CCNB3Q8WWL7 1395 aa11.71□□□□□ -0.54
CDC42SE1-201ENST00000357235 NCAPD3P42695 1498 aa11.7□□□□□ -0.54
CDC42SE1-201ENST00000357235 SIN3AQ96ST3 1273 aa11.7□□□□□ -0.54
CDC42SE1-201ENST00000357235 ARAP1Q96P48 1450 aa11.7□□□□□ -0.54
CDC42SE1-201ENST00000357235 P3H3Q8IVL6 736 aa11.69□□□□□ -0.54
CDC42SE1-201ENST00000357235 TRIM52Q96A61 297 aa11.68□□□□□ -0.54
CDC42SE1-201ENST00000357235 RAB3GAP2Q9H2M9 1393 aa11.67□□□□□ -0.54
CDC42SE1-201ENST00000357235 NEFLP07196 543 aa11.65□□□□□ -0.54
CDC42SE1-201ENST00000357235 ANO8Q9HCE9 1232 aaPredicted RBP11.65□□□□□ -0.55
CDC42SE1-201ENST00000357235 PRXQ9BXM0 1461 aa11.64□□□□□ -0.55
CDC42SE1-201ENST00000357235 KIF27Q86VH2 1401 aa11.63□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms