RNA–Protein interactions for RNA: ENST00000356025.7

SIRPA-201, Transcript of signal regulatory protein alpha, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SIRPA, Length 3,867 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SIRPA-201ENST00000356025 NISCHQ9Y2I1 1504 aa23.67■■□□□ 1.38
SIRPA-201ENST00000356025 DCAF8L2P0C7V8 631 aa21.66■■□□□ 1.06
SIRPA-201ENST00000356025 SHROOM4Q9ULL8 1493 aa21.63■■□□□ 1.05
SIRPA-201ENST00000356025 SUPT5HO00267 1087 aaKnown RBP21.39■■□□□ 1.01
SIRPA-201ENST00000356025 EHMT2Q96KQ7 1210 aa20.3■□□□□ 0.84
SIRPA-201ENST00000356025 PCGF6Q9BYE7 350 aa20.06■□□□□ 0.8
SIRPA-201ENST00000356025 CHIC1Q5VXU3 224 aa20.04■□□□□ 0.8
SIRPA-201ENST00000356025 FAM9AQ8IZU1 332 aaPredicted RBP20■□□□□ 0.79
SIRPA-201ENST00000356025 LOC105371045A0A1W2PR82 267 aa19.94■□□□□ 0.78
SIRPA-201ENST00000356025 ZCCHC6Q5VYS8 1495 aaKnown RBP19.84■□□□□ 0.77
SIRPA-201ENST00000356025 TRIM41Q8WV44 630 aa19.61■□□□□ 0.73
SIRPA-201ENST00000356025 MYO15BQ96JP2 1530 aa19.6■□□□□ 0.73
SIRPA-201ENST00000356025 PPARGC1BQ86YN6 1023 aaKnown RBP19.59■□□□□ 0.73
SIRPA-201ENST00000356025 TTBK1Q5TCY1 1321 aaPredicted RBP19.55■□□□□ 0.72
SIRPA-201ENST00000356025 CCDC180Q9P1Z9 1646 aa19.49■□□□□ 0.71
SIRPA-201ENST00000356025 HRCP23327 699 aa19.47■□□□□ 0.71
SIRPA-201ENST00000356025 ABCC9O60706 1549 aa19.46■□□□□ 0.71
SIRPA-201ENST00000356025 SCRIBQ14160 1630 aa19.25■□□□□ 0.67
SIRPA-201ENST00000356025 TRIM26Q12899 539 aaPredicted RBP19.17■□□□□ 0.66
SIRPA-201ENST00000356025 RANGAP1P46060 587 aaPredicted RBP19.16■□□□□ 0.66
SIRPA-201ENST00000356025 PABPN1Q86U42 306 aaKnown RBP eCLIP19.08■□□□□ 0.65
SIRPA-201ENST00000356025 RSF1Q96T23 1441 aaPredicted RBP18.98■□□□□ 0.63
SIRPA-201ENST00000356025 UBTFP17480 764 aaKnown RBP18.95■□□□□ 0.62
SIRPA-201ENST00000356025 CCER1Q8TC90 406 aaPredicted RBP18.9■□□□□ 0.62
SIRPA-201ENST00000356025 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.87■□□□□ 0.61
SIRPA-201ENST00000356025 CECR2Q9BXF3 1484 aa18.85■□□□□ 0.61
SIRPA-201ENST00000356025 DCAF1Q9Y4B6 1507 aa18.81■□□□□ 0.6
SIRPA-201ENST00000356025 RB1CC1Q8TDY2 1594 aa18.71■□□□□ 0.59
SIRPA-201ENST00000356025 ZEB1P37275 1124 aaPredicted RBP18.7■□□□□ 0.58
SIRPA-201ENST00000356025 APLP2Q06481 763 aa18.61■□□□□ 0.57
SIRPA-201ENST00000356025 HNRNPUL2Q1KMD3 747 aaKnown RBP18.6■□□□□ 0.57
SIRPA-201ENST00000356025 MROH2BQ7Z745 1585 aa18.59■□□□□ 0.57
SIRPA-201ENST00000356025 YTHDC1Q96MU7 727 aaKnown RBP18.47■□□□□ 0.55
SIRPA-201ENST00000356025 WIZO95785 1651 aa18.43■□□□□ 0.54
SIRPA-201ENST00000356025 CSRNP3Q8WYN3 585 aa18.43■□□□□ 0.54
SIRPA-201ENST00000356025 NACADO15069 1562 aa18.42■□□□□ 0.54
SIRPA-201ENST00000356025 ATP1B4Q9UN42 357 aaPredicted RBP18.39■□□□□ 0.53
SIRPA-201ENST00000356025 ITGAEP38570 1179 aa18.38■□□□□ 0.53
SIRPA-201ENST00000356025 ABCC8Q09428 1581 aa18.33■□□□□ 0.53
SIRPA-201ENST00000356025 SCAF1Q9H7N4 1312 aaKnown RBP18.3■□□□□ 0.52
SIRPA-201ENST00000356025 SOGA1O94964 1423 aa18.29■□□□□ 0.52
SIRPA-201ENST00000356025 DIEXFQ68CQ4 756 aaKnown RBP18.27■□□□□ 0.52
SIRPA-201ENST00000356025 CCDC88BA6NC98 1476 aa18.26■□□□□ 0.51
SIRPA-201ENST00000356025 PELP1Q8IZL8 1130 aaKnown RBP18.22■□□□□ 0.51
SIRPA-201ENST00000356025 BAZ1AQ9NRL2 1556 aaPredicted RBP18.18■□□□□ 0.5
SIRPA-201ENST00000356025 CEP162Q5TB80 1403 aa18.16■□□□□ 0.5
SIRPA-201ENST00000356025 RUSC2Q8N2Y8 1516 aa18.14■□□□□ 0.49
SIRPA-201ENST00000356025 CENPBP07199 599 aaPredicted RBP18.11■□□□□ 0.49
SIRPA-201ENST00000356025 P3H3Q8IVL6 736 aa18.06■□□□□ 0.48
SIRPA-201ENST00000356025 GTF3C3Q9Y5Q9 886 aa18.04■□□□□ 0.48
SIRPA-201ENST00000356025 WRNQ14191 1432 aaPredicted RBP eCLIP18.04■□□□□ 0.48
SIRPA-201ENST00000356025 NEUROD1Q13562 356 aa18.03■□□□□ 0.48
SIRPA-201ENST00000356025 ACIN1Q9UKV3 1341 aaKnown RBP17.96■□□□□ 0.47
SIRPA-201ENST00000356025 ZNF316A6NFI3 1004 aaPredicted RBP17.96■□□□□ 0.46
SIRPA-201ENST00000356025 TNIKQ9UKE5 1360 aa17.95■□□□□ 0.46
SIRPA-201ENST00000356025 CLIP1P30622 1438 aa17.94■□□□□ 0.46
SIRPA-201ENST00000356025 TOP2AP11388 1531 aaKnown RBP17.93■□□□□ 0.46
SIRPA-201ENST00000356025 SMARCA4P51532 1647 aa17.93■□□□□ 0.46
SIRPA-201ENST00000356025 BAZ1BQ9UIG0 1483 aaKnown RBP17.9■□□□□ 0.46
SIRPA-201ENST00000356025 FAM50AQ14320 339 aaKnown RBP17.89■□□□□ 0.45
SIRPA-201ENST00000356025 GOLGA3Q08378 1498 aa17.88■□□□□ 0.45
SIRPA-201ENST00000356025 SMARCA2P51531 1590 aa17.86■□□□□ 0.45
SIRPA-201ENST00000356025 MIER1Q8N108 512 aa17.82■□□□□ 0.44
SIRPA-201ENST00000356025 ARID3CA6NKF2 412 aa17.78■□□□□ 0.44
SIRPA-201ENST00000356025 KANK4Q5T7N3 995 aaPredicted RBP17.77■□□□□ 0.44
SIRPA-201ENST00000356025 EEA1Q15075 1411 aa17.75■□□□□ 0.43
SIRPA-201ENST00000356025 CEP164Q9UPV0 1460 aa17.73■□□□□ 0.43
SIRPA-201ENST00000356025 RAPGEF2Q9Y4G8 1499 aa17.72■□□□□ 0.43
SIRPA-201ENST00000356025 ATAD2BQ9ULI0 1458 aa17.72■□□□□ 0.43
SIRPA-201ENST00000356025 HIRIP3Q9BW71 556 aaPredicted RBP17.68■□□□□ 0.42
SIRPA-201ENST00000356025 CNGB1Q14028 1251 aaPredicted RBP17.65■□□□□ 0.42
SIRPA-201ENST00000356025 VPS8Q8N3P4 1428 aa17.59■□□□□ 0.41
SIRPA-201ENST00000356025 SYNJ1O43426 1573 aa17.58■□□□□ 0.41
SIRPA-201ENST00000356025 BICRAQ9NZM4 1560 aa17.55■□□□□ 0.4
SIRPA-201ENST00000356025 BCANQ96GW7 911 aa17.55■□□□□ 0.4
SIRPA-201ENST00000356025 UNC13AQ9UPW8 1703 aa17.53■□□□□ 0.4
SIRPA-201ENST00000356025 KIF27Q86VH2 1401 aa17.52■□□□□ 0.4
SIRPA-201ENST00000356025 SIN3AQ96ST3 1273 aa17.51■□□□□ 0.39
SIRPA-201ENST00000356025 DDX10Q13206 875 aaKnown RBP17.5■□□□□ 0.39
SIRPA-201ENST00000356025 CUX2O14529 1486 aa17.48■□□□□ 0.39
SIRPA-201ENST00000356025 CHIC2Q9UKJ5 165 aa17.46■□□□□ 0.39
SIRPA-201ENST00000356025 TRIM52Q96A61 297 aa17.46■□□□□ 0.38
SIRPA-201ENST00000356025 EIF4G1Q04637 1599 aaKnown RBP17.45■□□□□ 0.38
SIRPA-201ENST00000356025 POLR3GLQ9BT43 218 aa17.44■□□□□ 0.38
SIRPA-201ENST00000356025 FBLN2P98095 1184 aa17.39■□□□□ 0.37
SIRPA-201ENST00000356025 CARMIL1Q5VZK9 1371 aa17.39■□□□□ 0.37
SIRPA-201ENST00000356025 CCNB3Q8WWL7 1395 aa17.36■□□□□ 0.37
SIRPA-201ENST00000356025 KIF21BO75037 1637 aa17.36■□□□□ 0.37
SIRPA-201ENST00000356025 MYT1Q01538 1121 aa17.35■□□□□ 0.37
SIRPA-201ENST00000356025 KCNH8Q96L42 1107 aa17.34■□□□□ 0.37
SIRPA-201ENST00000356025 RRP7BPQ9NSQ0 103 aa17.32■□□□□ 0.36
SIRPA-201ENST00000356025 DHX57Q6P158 1386 aaKnown RBP17.3■□□□□ 0.36
SIRPA-201ENST00000356025 ARAP1Q96P48 1450 aa17.3■□□□□ 0.36
SIRPA-201ENST00000356025 TDRD9Q8NDG6 1382 aaKnown RBP17.28■□□□□ 0.36
SIRPA-201ENST00000356025 ZNF326Q5BKZ1 582 aaKnown RBP17.28■□□□□ 0.36
SIRPA-201ENST00000356025 RAB3GAP2Q9H2M9 1393 aa17.26■□□□□ 0.35
SIRPA-201ENST00000356025 NEFLP07196 543 aa17.26■□□□□ 0.35
SIRPA-201ENST00000356025 DNAJC5BQ9UF47 199 aa17.26■□□□□ 0.35
SIRPA-201ENST00000356025 IGF1RP08069 1367 aa17.25■□□□□ 0.35
SIRPA-201ENST00000356025 MTUS2Q5JR59 1369 aa17.25■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 232.4 ms