RNA–Protein interactions for RNA: ENST00000355683.9

STRN3-201, Transcript of striatin 3, humanhuman

TSL 1 (best) BASIC

Gene STRN3, Length 3,970 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
STRN3-201ENST00000355683 NISCHQ9Y2I1 1504 aa28.69■■■□□ 2.18
STRN3-201ENST00000355683 DCAF8L2P0C7V8 631 aa27.13■■□□□ 1.93
STRN3-201ENST00000355683 SHROOM4Q9ULL8 1493 aa26.67■■□□□ 1.86
STRN3-201ENST00000355683 SUPT5HO00267 1087 aaKnown RBP26.63■■□□□ 1.85
STRN3-201ENST00000355683 EHMT2Q96KQ7 1210 aa25.84■■□□□ 1.73
STRN3-201ENST00000355683 PCGF6Q9BYE7 350 aa25.14■■□□□ 1.62
STRN3-201ENST00000355683 FAM9AQ8IZU1 332 aaPredicted RBP25.09■■□□□ 1.61
STRN3-201ENST00000355683 TTBK1Q5TCY1 1321 aaPredicted RBP24.85■■□□□ 1.57
STRN3-201ENST00000355683 ABCC9O60706 1549 aa24.8■■□□□ 1.56
STRN3-201ENST00000355683 LOC105371045A0A1W2PR82 267 aa24.64■■□□□ 1.54
STRN3-201ENST00000355683 PPARGC1BQ86YN6 1023 aaKnown RBP24.61■■□□□ 1.53
STRN3-201ENST00000355683 CHIC1Q5VXU3 224 aa24.38■■□□□ 1.49
STRN3-201ENST00000355683 CCDC180Q9P1Z9 1646 aa24.33■■□□□ 1.49
STRN3-201ENST00000355683 RANGAP1P46060 587 aaPredicted RBP24.24■■□□□ 1.47
STRN3-201ENST00000355683 TRIM41Q8WV44 630 aa24.17■■□□□ 1.46
STRN3-201ENST00000355683 HRCP23327 699 aa24.02■■□□□ 1.44
STRN3-201ENST00000355683 PABPN1Q86U42 306 aaKnown RBP eCLIP23.95■■□□□ 1.42
STRN3-201ENST00000355683 ZCCHC6Q5VYS8 1495 aaKnown RBP23.84■■□□□ 1.41
STRN3-201ENST00000355683 CCER1Q8TC90 406 aaPredicted RBP23.71■■□□□ 1.39
STRN3-201ENST00000355683 TRIM26Q12899 539 aaPredicted RBP23.6■■□□□ 1.37
STRN3-201ENST00000355683 UBTFP17480 764 aaKnown RBP23.57■■□□□ 1.36
STRN3-201ENST00000355683 YTHDC1Q96MU7 727 aaKnown RBP23.56■■□□□ 1.36
STRN3-201ENST00000355683 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.54■■□□□ 1.36
STRN3-201ENST00000355683 MYO15BQ96JP2 1530 aa23.49■■□□□ 1.35
STRN3-201ENST00000355683 SCRIBQ14160 1630 aa23.47■■□□□ 1.35
STRN3-201ENST00000355683 RB1CC1Q8TDY2 1594 aa23.34■■□□□ 1.33
STRN3-201ENST00000355683 APLP2Q06481 763 aa23.32■■□□□ 1.32
STRN3-201ENST00000355683 NACADO15069 1562 aa23.26■■□□□ 1.31
STRN3-201ENST00000355683 HNRNPUL2Q1KMD3 747 aaKnown RBP23.26■■□□□ 1.31
STRN3-201ENST00000355683 ATP1B4Q9UN42 357 aaPredicted RBP23.22■■□□□ 1.31
STRN3-201ENST00000355683 ITGAEP38570 1179 aa23.15■■□□□ 1.3
STRN3-201ENST00000355683 ZEB1P37275 1124 aaPredicted RBP23.1■■□□□ 1.29
STRN3-201ENST00000355683 DCAF1Q9Y4B6 1507 aa23.06■■□□□ 1.28
STRN3-201ENST00000355683 PELP1Q8IZL8 1130 aaKnown RBP23.01■■□□□ 1.27
STRN3-201ENST00000355683 CENPBP07199 599 aaPredicted RBP22.97■■□□□ 1.27
STRN3-201ENST00000355683 DIEXFQ68CQ4 756 aaKnown RBP22.8■■□□□ 1.24
STRN3-201ENST00000355683 SCAF1Q9H7N4 1312 aaKnown RBP22.76■■□□□ 1.23
STRN3-201ENST00000355683 CNGB1Q14028 1251 aaPredicted RBP22.69■■□□□ 1.22
STRN3-201ENST00000355683 GTF3C3Q9Y5Q9 886 aa22.65■■□□□ 1.22
STRN3-201ENST00000355683 CECR2Q9BXF3 1484 aa22.63■■□□□ 1.21
STRN3-201ENST00000355683 RSF1Q96T23 1441 aaPredicted RBP22.51■■□□□ 1.19
STRN3-201ENST00000355683 NEUROD1Q13562 356 aa22.44■■□□□ 1.18
STRN3-201ENST00000355683 P3H3Q8IVL6 736 aa22.4■■□□□ 1.18
STRN3-201ENST00000355683 CSRNP3Q8WYN3 585 aa22.38■■□□□ 1.17
STRN3-201ENST00000355683 BCANQ96GW7 911 aa22.36■■□□□ 1.17
STRN3-201ENST00000355683 BAZ1AQ9NRL2 1556 aaPredicted RBP22.29■■□□□ 1.16
STRN3-201ENST00000355683 MROH2BQ7Z745 1585 aa22.29■■□□□ 1.16
STRN3-201ENST00000355683 ACIN1Q9UKV3 1341 aaKnown RBP22.28■■□□□ 1.16
STRN3-201ENST00000355683 ARID3CA6NKF2 412 aa22.27■■□□□ 1.16
STRN3-201ENST00000355683 FAM50AQ14320 339 aaKnown RBP22.27■■□□□ 1.16
STRN3-201ENST00000355683 POLR3GLQ9BT43 218 aa22.25■■□□□ 1.15
STRN3-201ENST00000355683 BAZ1BQ9UIG0 1483 aaKnown RBP22.22■■□□□ 1.15
STRN3-201ENST00000355683 ZNF316A6NFI3 1004 aaPredicted RBP22.2■■□□□ 1.14
STRN3-201ENST00000355683 ERICH6Q7L0X2 663 aa22.18■■□□□ 1.14
STRN3-201ENST00000355683 HIRIP3Q9BW71 556 aaPredicted RBP22.17■■□□□ 1.14
STRN3-201ENST00000355683 MIER1Q8N108 512 aa22.12■■□□□ 1.13
STRN3-201ENST00000355683 MYT1Q01538 1121 aa22.04■■□□□ 1.12
STRN3-201ENST00000355683 NEFLP07196 543 aa22.03■■□□□ 1.12
STRN3-201ENST00000355683 WIZO95785 1651 aa22■■□□□ 1.11
STRN3-201ENST00000355683 BICRAQ9NZM4 1560 aa21.95■■□□□ 1.1
STRN3-201ENST00000355683 ATAD2BQ9ULI0 1458 aa21.93■■□□□ 1.1
STRN3-201ENST00000355683 SOGA1O94964 1423 aa21.93■■□□□ 1.1
STRN3-201ENST00000355683 SMARCA4P51532 1647 aa21.93■■□□□ 1.1
STRN3-201ENST00000355683 SENP3-EIF4A1A0A087X0R7 540 aa21.9■■□□□ 1.1
STRN3-201ENST00000355683 SMARCA2P51531 1590 aa21.89■■□□□ 1.1
STRN3-201ENST00000355683 FBLN2P98095 1184 aa21.85■■□□□ 1.09
STRN3-201ENST00000355683 CEP162Q5TB80 1403 aa21.85■■□□□ 1.09
STRN3-201ENST00000355683 DDX10Q13206 875 aaKnown RBP21.84■■□□□ 1.09
STRN3-201ENST00000355683 EIF4G1Q04637 1599 aaKnown RBP21.84■■□□□ 1.09
STRN3-201ENST00000355683 CCDC88BA6NC98 1476 aa21.83■■□□□ 1.08
STRN3-201ENST00000355683 TRIM52Q96A61 297 aa21.81■■□□□ 1.08
STRN3-201ENST00000355683 ABCC8Q09428 1581 aa21.8■■□□□ 1.08
STRN3-201ENST00000355683 ZNF326Q5BKZ1 582 aaKnown RBP21.79■■□□□ 1.08
STRN3-201ENST00000355683 UNC13AQ9UPW8 1703 aa21.79■■□□□ 1.08
STRN3-201ENST00000355683 DNAJC5BQ9UF47 199 aa21.78■■□□□ 1.08
STRN3-201ENST00000355683 TOP2AP11388 1531 aaKnown RBP21.69■■□□□ 1.06
STRN3-201ENST00000355683 CHIC2Q9UKJ5 165 aa21.69■■□□□ 1.06
STRN3-201ENST00000355683 CLIP1P30622 1438 aa21.66■■□□□ 1.06
STRN3-201ENST00000355683 IRX6P78412 446 aaPredicted RBP21.65■■□□□ 1.06
STRN3-201ENST00000355683 RUSC2Q8N2Y8 1516 aa21.65■■□□□ 1.06
STRN3-201ENST00000355683 ERCC6Q03468 1493 aa21.64■■□□□ 1.06
STRN3-201ENST00000355683 WRNQ14191 1432 aaPredicted RBP eCLIP21.61■■□□□ 1.052e-6■■□□□ 13.9
STRN3-201ENST00000355683 SIN3AQ96ST3 1273 aa21.61■■□□□ 1.05
STRN3-201ENST00000355683 FKBP8Q14318 412 aa21.6■■□□□ 1.05
STRN3-201ENST00000355683 KANK4Q5T7N3 995 aaPredicted RBP21.6■■□□□ 1.05
STRN3-201ENST00000355683 CC2D2AQ9P2K1 1620 aa21.6■■□□□ 1.05
STRN3-201ENST00000355683 NCAPD3P42695 1498 aa21.59■■□□□ 1.05
STRN3-201ENST00000355683 CADPSQ9ULU8 1353 aa21.56■■□□□ 1.04
STRN3-201ENST00000355683 ANP32CO43423 234 aa21.48■■□□□ 1.03
STRN3-201ENST00000355683 ZNF777Q9ULD5 760 aaPredicted RBP21.48■■□□□ 1.03
STRN3-201ENST00000355683 KCNH8Q96L42 1107 aa21.48■■□□□ 1.03
STRN3-201ENST00000355683 MYT1LQ9UL68 1186 aa21.46■■□□□ 1.03
STRN3-201ENST00000355683 PDS5BQ9NTI5 1447 aa21.44■■□□□ 1.02
STRN3-201ENST00000355683 SALL2Q9Y467 1007 aaPredicted RBP21.44■■□□□ 1.02
STRN3-201ENST00000355683 TNIKQ9UKE5 1360 aa21.43■■□□□ 1.02
STRN3-201ENST00000355683 RRP7BPQ9NSQ0 103 aa21.4■■□□□ 1.02
STRN3-201ENST00000355683 FAM9BQ8IZU0 186 aa21.39■■□□□ 1.01
STRN3-201ENST00000355683 HNRNPUQ00839 825 aaKnown RBP eCLIP21.37■■□□□ 1.01
STRN3-201ENST00000355683 GOLGA3Q08378 1498 aa21.35■■□□□ 1.01
STRN3-201ENST00000355683 CHMP7Q8WUX9 453 aaPredicted RBP21.34■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms