RNA–Protein interactions for RNA: ENST00000339998.10

MBD1-203, Transcript of methyl-CpG binding domain protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MBD1, Length 2,956 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MBD1-203ENST00000339998 NISCHQ9Y2I1 1504 aa33.69■■■□□ 2.98
MBD1-203ENST00000339998 CCDC180Q9P1Z9 1646 aa28.84■■■□□ 2.21
MBD1-203ENST00000339998 SHROOM4Q9ULL8 1493 aa28.49■■■□□ 2.15
MBD1-203ENST00000339998 DCAF8L2P0C7V8 631 aa28.4■■■□□ 2.14
MBD1-203ENST00000339998 ZCCHC6Q5VYS8 1495 aaKnown RBP28.34■■■□□ 2.13
MBD1-203ENST00000339998 SUPT5HO00267 1087 aaKnown RBP27.6■■■□□ 2.01
MBD1-203ENST00000339998 ABCC9O60706 1549 aa27.54■■■□□ 2
MBD1-203ENST00000339998 DCAF1Q9Y4B6 1507 aa27.51■■■□□ 2
MBD1-203ENST00000339998 SCRIBQ14160 1630 aa27.12■■□□□ 1.93
MBD1-203ENST00000339998 MYO15BQ96JP2 1530 aa26.93■■□□□ 1.9
MBD1-203ENST00000339998 NACADO15069 1562 aa26.85■■□□□ 1.89
MBD1-203ENST00000339998 RB1CC1Q8TDY2 1594 aa26.59■■□□□ 1.85
MBD1-203ENST00000339998 RSF1Q96T23 1441 aaPredicted RBP26.45■■□□□ 1.83
MBD1-203ENST00000339998 CECR2Q9BXF3 1484 aa26.45■■□□□ 1.82
MBD1-203ENST00000339998 CHIC1Q5VXU3 224 aa26.42■■□□□ 1.82
MBD1-203ENST00000339998 PABPN1Q86U42 306 aaKnown RBP eCLIP26.28■■□□□ 1.8
MBD1-203ENST00000339998 UNC13AQ9UPW8 1703 aa26.25■■□□□ 1.79
MBD1-203ENST00000339998 MROH2BQ7Z745 1585 aa26.24■■□□□ 1.79
MBD1-203ENST00000339998 WIZO95785 1651 aa26.07■■□□□ 1.76
MBD1-203ENST00000339998 BICRAQ9NZM4 1560 aa25.96■■□□□ 1.75
MBD1-203ENST00000339998 BAZ1AQ9NRL2 1556 aaPredicted RBP25.89■■□□□ 1.73
MBD1-203ENST00000339998 SMARCA4P51532 1647 aa25.79■■□□□ 1.72
MBD1-203ENST00000339998 LOC105371045A0A1W2PR82 267 aa25.73■■□□□ 1.71
MBD1-203ENST00000339998 TRIM41Q8WV44 630 aa25.67■■□□□ 1.7
MBD1-203ENST00000339998 FAM9AQ8IZU1 332 aaPredicted RBP25.58■■□□□ 1.69
MBD1-203ENST00000339998 TOP2AP11388 1531 aaKnown RBP25.54■■□□□ 1.68
MBD1-203ENST00000339998 CCDC88BA6NC98 1476 aa25.5■■□□□ 1.67
MBD1-203ENST00000339998 EHMT2Q96KQ7 1210 aa25.49■■□□□ 1.67
MBD1-203ENST00000339998 SMARCA2P51531 1590 aa25.43■■□□□ 1.66
MBD1-203ENST00000339998 ATAD2BQ9ULI0 1458 aa25.32■■□□□ 1.64
MBD1-203ENST00000339998 EIF4G1Q04637 1599 aaKnown RBP25.31■■□□□ 1.64
MBD1-203ENST00000339998 ABCC8Q09428 1581 aa25.28■■□□□ 1.64
MBD1-203ENST00000339998 PEG3Q9GZU2 1588 aa25.25■■□□□ 1.63
MBD1-203ENST00000339998 BAZ1BQ9UIG0 1483 aaKnown RBP25.21■■□□□ 1.63
MBD1-203ENST00000339998 PCGF6Q9BYE7 350 aa24.98■■□□□ 1.59
MBD1-203ENST00000339998 SOGA1O94964 1423 aa24.92■■□□□ 1.58
MBD1-203ENST00000339998 NCAPD3P42695 1498 aa24.9■■□□□ 1.58
MBD1-203ENST00000339998 RUSC2Q8N2Y8 1516 aa24.87■■□□□ 1.57
MBD1-203ENST00000339998 WRNQ14191 1432 aaPredicted RBP eCLIP24.86■■□□□ 1.57
MBD1-203ENST00000339998 HMGXB3Q12766 1538 aa24.79■■□□□ 1.56
MBD1-203ENST00000339998 SYNJ1O43426 1573 aa24.79■■□□□ 1.56
MBD1-203ENST00000339998 CC2D2AQ9P2K1 1620 aa24.71■■□□□ 1.55
MBD1-203ENST00000339998 PPARGC1BQ86YN6 1023 aaKnown RBP24.7■■□□□ 1.55
MBD1-203ENST00000339998 CSRNP3Q8WYN3 585 aa24.66■■□□□ 1.54
MBD1-203ENST00000339998 UBTFP17480 764 aaKnown RBP24.58■■□□□ 1.53
MBD1-203ENST00000339998 DNAJC5BQ9UF47 199 aa24.54■■□□□ 1.52
MBD1-203ENST00000339998 CFTRP13569 1480 aa24.54■■□□□ 1.52
MBD1-203ENST00000339998 TRIM26Q12899 539 aaPredicted RBP24.51■■□□□ 1.51
MBD1-203ENST00000339998 TOP2BQ02880 1626 aa24.46■■□□□ 1.51
MBD1-203ENST00000339998 TTBK1Q5TCY1 1321 aaPredicted RBP24.45■■□□□ 1.5
MBD1-203ENST00000339998 EEA1Q15075 1411 aa24.45■■□□□ 1.5
MBD1-203ENST00000339998 CUX1P39880 1505 aa24.44■■□□□ 1.5
MBD1-203ENST00000339998 RANGAP1P46060 587 aaPredicted RBP24.43■■□□□ 1.5
MBD1-203ENST00000339998 CADPSQ9ULU8 1353 aa24.42■■□□□ 1.5
MBD1-203ENST00000339998 CEP162Q5TB80 1403 aa24.41■■□□□ 1.5
MBD1-203ENST00000339998 HRCP23327 699 aa24.38■■□□□ 1.49
MBD1-203ENST00000339998 TNIKQ9UKE5 1360 aa24.36■■□□□ 1.49
MBD1-203ENST00000339998 NESP48681 1621 aa24.35■■□□□ 1.49
MBD1-203ENST00000339998 BIVM-ERCC5R4GMW8 1640 aa24.35■■□□□ 1.49
MBD1-203ENST00000339998 GOLGA3Q08378 1498 aa24.34■■□□□ 1.49
MBD1-203ENST00000339998 RAPGEF2Q9Y4G8 1499 aa24.31■■□□□ 1.48
MBD1-203ENST00000339998 CEP164Q9UPV0 1460 aa24.27■■□□□ 1.47
MBD1-203ENST00000339998 PRDM2Q13029 1718 aa24.19■■□□□ 1.46
MBD1-203ENST00000339998 FANCD2Q9BXW9 1451 aa24.19■■□□□ 1.46
MBD1-203ENST00000339998 KIF21BO75037 1637 aa24.19■■□□□ 1.46
MBD1-203ENST00000339998 FGD5Q6ZNL6 1462 aa24.12■■□□□ 1.45
MBD1-203ENST00000339998 KIF27Q86VH2 1401 aa24.12■■□□□ 1.45
MBD1-203ENST00000339998 CLIP1P30622 1438 aa24.1■■□□□ 1.45
MBD1-203ENST00000339998 CUX2O14529 1486 aa24.1■■□□□ 1.45
MBD1-203ENST00000339998 PRXQ9BXM0 1461 aa24.06■■□□□ 1.44
MBD1-203ENST00000339998 RAD54L2Q9Y4B4 1467 aa24.03■■□□□ 1.44
MBD1-203ENST00000339998 IGF1RP08069 1367 aa23.98■■□□□ 1.43
MBD1-203ENST00000339998 TOPBP1Q92547 1522 aa23.96■■□□□ 1.43
MBD1-203ENST00000339998 POLA1P09884 1462 aaPredicted RBP23.92■■□□□ 1.42
MBD1-203ENST00000339998 LAMC3Q9Y6N6 1575 aa23.91■■□□□ 1.42
MBD1-203ENST00000339998 ERICH3Q5RHP9 1530 aa23.91■■□□□ 1.42
MBD1-203ENST00000339998 URB2Q14146 1524 aaKnown RBP23.9■■□□□ 1.42
MBD1-203ENST00000339998 DNMBPQ6XZF7 1577 aa23.9■■□□□ 1.42
MBD1-203ENST00000339998 CARMIL1Q5VZK9 1371 aa23.86■■□□□ 1.41
MBD1-203ENST00000339998 VPS8Q8N3P4 1428 aa23.86■■□□□ 1.41
MBD1-203ENST00000339998 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.85■■□□□ 1.41
MBD1-203ENST00000339998 KIF21AQ7Z4S6 1674 aa23.83■■□□□ 1.4
MBD1-203ENST00000339998 PDS5BQ9NTI5 1447 aa23.82■■□□□ 1.4
MBD1-203ENST00000339998 TDRD9Q8NDG6 1382 aaKnown RBP23.81■■□□□ 1.4
MBD1-203ENST00000339998 ARAP1Q96P48 1450 aa23.79■■□□□ 1.4
MBD1-203ENST00000339998 APLP2Q06481 763 aa23.78■■□□□ 1.4
MBD1-203ENST00000339998 ABCA10Q8WWZ4 1543 aa23.75■■□□□ 1.39
MBD1-203ENST00000339998 P3H3Q8IVL6 736 aa23.75■■□□□ 1.39
MBD1-203ENST00000339998 ARHGAP35Q9NRY4 1499 aa23.71■■□□□ 1.39
MBD1-203ENST00000339998 KANK4Q5T7N3 995 aaPredicted RBP23.7■■□□□ 1.38
MBD1-203ENST00000339998 HNRNPUL2Q1KMD3 747 aaKnown RBP23.68■■□□□ 1.38
MBD1-203ENST00000339998 CCER1Q8TC90 406 aaPredicted RBP23.65■■□□□ 1.38
MBD1-203ENST00000339998 GAPVD1Q14C86 1478 aa23.57■■□□□ 1.36
MBD1-203ENST00000339998 ATP1B4Q9UN42 357 aaPredicted RBP23.56■■□□□ 1.36
MBD1-203ENST00000339998 WDR97A6NE52 1622 aa23.56■■□□□ 1.36
MBD1-203ENST00000339998 AQRO60306 1485 aaKnown RBP eCLIP23.54■■□□□ 1.366e-7■■■□□ 18.9
MBD1-203ENST00000339998 ZEB1P37275 1124 aaPredicted RBP23.54■■□□□ 1.36
MBD1-203ENST00000339998 ABCA5Q8WWZ7 1642 aa23.5■■□□□ 1.35
MBD1-203ENST00000339998 MRC2Q9UBG0 1479 aa23.5■■□□□ 1.35
MBD1-203ENST00000339998 TARBP1Q13395 1621 aaKnown RBP23.49■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 8.7 ms