RNA–Protein interactions for RNA: ENST00000336648.8

HLCS-201, Transcript of holocarboxylase synthetase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HLCS, Length 6,010 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLCS-201ENST00000336648 DCAF8L2P0C7V8 631 aa21.93■■□□□ 1.1
HLCS-201ENST00000336648 PELP1Q8IZL8 1130 aaKnown RBP21.34■■□□□ 1.01
HLCS-201ENST00000336648 SUPT5HO00267 1087 aaKnown RBP20.9■□□□□ 0.94
HLCS-201ENST00000336648 ERICH6Q7L0X2 663 aa20.5■□□□□ 0.87
HLCS-201ENST00000336648 NISCHQ9Y2I1 1504 aa20.5■□□□□ 0.87
HLCS-201ENST00000336648 APLP2Q06481 763 aa20.46■□□□□ 0.87
HLCS-201ENST00000336648 MYT1Q01538 1121 aa20.44■□□□□ 0.86
HLCS-201ENST00000336648 CCER1Q8TC90 406 aaPredicted RBP20.33■□□□□ 0.84
HLCS-201ENST00000336648 FAM9AQ8IZU1 332 aaPredicted RBP20.29■□□□□ 0.84
HLCS-201ENST00000336648 SHROOM4Q9ULL8 1493 aa20.26■□□□□ 0.83
HLCS-201ENST00000336648 EHMT2Q96KQ7 1210 aa20.11■□□□□ 0.81
HLCS-201ENST00000336648 CENPBP07199 599 aaPredicted RBP20■□□□□ 0.79
HLCS-201ENST00000336648 ZEB1P37275 1124 aaPredicted RBP19.98■□□□□ 0.79
HLCS-201ENST00000336648 PCGF6Q9BYE7 350 aa19.71■□□□□ 0.75
HLCS-201ENST00000336648 NEFLP07196 543 aa19.61■□□□□ 0.73
HLCS-201ENST00000336648 TTBK1Q5TCY1 1321 aaPredicted RBP19.53■□□□□ 0.72
HLCS-201ENST00000336648 TRIM41Q8WV44 630 aa19.52■□□□□ 0.71
HLCS-201ENST00000336648 YTHDC1Q96MU7 727 aaKnown RBP19.49■□□□□ 0.71
HLCS-201ENST00000336648 ATP1B4Q9UN42 357 aaPredicted RBP19.38■□□□□ 0.69
HLCS-201ENST00000336648 UBTFP17480 764 aaKnown RBP19.34■□□□□ 0.69
HLCS-201ENST00000336648 DAXXQ9UER7 740 aaPredicted RBP19.33■□□□□ 0.69
HLCS-201ENST00000336648 RANGAP1P46060 587 aaPredicted RBP19.32■□□□□ 0.68
HLCS-201ENST00000336648 TRIM26Q12899 539 aaPredicted RBP19.04■□□□□ 0.64
HLCS-201ENST00000336648 RTL5Q5HYW3 569 aaPredicted RBP18.97■□□□□ 0.63
HLCS-201ENST00000336648 ZNF316A6NFI3 1004 aaPredicted RBP18.83■□□□□ 0.6
HLCS-201ENST00000336648 HRCP23327 699 aa18.78■□□□□ 0.6
HLCS-201ENST00000336648 MYT1LQ9UL68 1186 aa18.76■□□□□ 0.59
HLCS-201ENST00000336648 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.71■□□□□ 0.59
HLCS-201ENST00000336648 HNRNPUL2Q1KMD3 747 aaKnown RBP18.71■□□□□ 0.59
HLCS-201ENST00000336648 POLR3GLQ9BT43 218 aa18.71■□□□□ 0.59
HLCS-201ENST00000336648 PPARGC1BQ86YN6 1023 aaKnown RBP18.66■□□□□ 0.58
HLCS-201ENST00000336648 ITGAEP38570 1179 aa18.64■□□□□ 0.57
HLCS-201ENST00000336648 CLSPNQ9HAW4 1339 aa18.55■□□□□ 0.56
HLCS-201ENST00000336648 SLC4A1APQ9BWU0 796 aaKnown RBP18.43■□□□□ 0.54
HLCS-201ENST00000336648 CHIC1Q5VXU3 224 aa18.42■□□□□ 0.54
HLCS-201ENST00000336648 DIEXFQ68CQ4 756 aaKnown RBP18.41■□□□□ 0.54
HLCS-201ENST00000336648 CNGB1Q14028 1251 aaPredicted RBP18.32■□□□□ 0.52
HLCS-201ENST00000336648 LOC105371045A0A1W2PR82 267 aa18.32■□□□□ 0.52
HLCS-201ENST00000336648 GLIPR1L2Q4G1C9 344 aa18.31■□□□□ 0.52
HLCS-201ENST00000336648 ZBTB47Q9UFB7 747 aaPredicted RBP18.31■□□□□ 0.52
HLCS-201ENST00000336648 FAM50AQ14320 339 aaKnown RBP18.26■□□□□ 0.51
HLCS-201ENST00000336648 TRIM52Q96A61 297 aa18.25■□□□□ 0.51
HLCS-201ENST00000336648 CDK11AQ9UQ88 783 aaPredicted RBP18.24■□□□□ 0.51
HLCS-201ENST00000336648 ANP32CO43423 234 aa18.24■□□□□ 0.51
HLCS-201ENST00000336648 EIF5BO60841 1220 aaKnown RBP18.21■□□□□ 0.5
HLCS-201ENST00000336648 NEFMP07197 916 aa18.1■□□□□ 0.49
HLCS-201ENST00000336648 NEUROD1Q13562 356 aa18.08■□□□□ 0.48
HLCS-201ENST00000336648 BCANQ96GW7 911 aa18.06■□□□□ 0.48
HLCS-201ENST00000336648 CANXP27824 592 aaKnown RBP18.05■□□□□ 0.48
HLCS-201ENST00000336648 ANP32BQ92688 251 aaKnown RBP18.04■□□□□ 0.48
HLCS-201ENST00000336648 GTF3C3Q9Y5Q9 886 aa18.01■□□□□ 0.47
HLCS-201ENST00000336648 ANP32AP39687 249 aaKnown RBP18■□□□□ 0.47
HLCS-201ENST00000336648 ZNF326Q5BKZ1 582 aaKnown RBP17.96■□□□□ 0.47
HLCS-201ENST00000336648 SLC24A1O60721 1099 aa17.81■□□□□ 0.44
HLCS-201ENST00000336648 ACIN1Q9UKV3 1341 aaKnown RBP17.79■□□□□ 0.44
HLCS-201ENST00000336648 UPF2Q9HAU5 1272 aaKnown RBP17.77■□□□□ 0.44
HLCS-201ENST00000336648 NPM2Q86SE8 214 aaKnown RBP17.75■□□□□ 0.43
HLCS-201ENST00000336648 HSP90AA1P07900 732 aaKnown RBP17.7■□□□□ 0.42
HLCS-201ENST00000336648 FBLN2P98095 1184 aa17.69■□□□□ 0.42
HLCS-201ENST00000336648 CSRNP3Q8WYN3 585 aa17.69■□□□□ 0.42
HLCS-201ENST00000336648 BCL11AQ9H165 835 aa17.69■□□□□ 0.42
HLCS-201ENST00000336648 PABPN1Q86U42 306 aaKnown RBP eCLIP17.65■□□□□ 0.42
HLCS-201ENST00000336648 TONSLQ96HA7 1378 aa17.64■□□□□ 0.42
HLCS-201ENST00000336648 GOLGA6L2Q8N9W4 650 aaPredicted RBP17.63■□□□□ 0.41
HLCS-201ENST00000336648 ESF1Q9H501 851 aaKnown RBP17.62■□□□□ 0.41
HLCS-201ENST00000336648 TNNT2P45379 298 aaPredicted RBP17.6■□□□□ 0.41
HLCS-201ENST00000336648 ABCC9O60706 1549 aa17.58■□□□□ 0.4
HLCS-201ENST00000336648 ZNF777Q9ULD5 760 aaPredicted RBP17.56■□□□□ 0.4
HLCS-201ENST00000336648 FKBP8Q14318 412 aa17.55■□□□□ 0.4
HLCS-201ENST00000336648 HNRNPUQ00839 825 aaKnown RBP eCLIP17.51■□□□□ 0.39
HLCS-201ENST00000336648 P3H3Q8IVL6 736 aa17.51■□□□□ 0.39
HLCS-201ENST00000336648 STAG3Q9UJ98 1225 aa17.5■□□□□ 0.39
HLCS-201ENST00000336648 NBR1Q14596 966 aa17.49■□□□□ 0.39
HLCS-201ENST00000336648 CDK11BP21127 795 aaKnown RBP17.47■□□□□ 0.39
HLCS-201ENST00000336648 CCDC136Q96JN2 1154 aa17.46■□□□□ 0.39
HLCS-201ENST00000336648 TMC1Q8TDI8 760 aa17.44■□□□□ 0.38
HLCS-201ENST00000336648 WDR43Q15061 677 aaKnown RBP eCLIP17.43■□□□□ 0.38
HLCS-201ENST00000336648 ANP32EQ9BTT0 268 aa17.42■□□□□ 0.38
HLCS-201ENST00000336648 ARXQ96QS3 562 aa17.42■□□□□ 0.38
HLCS-201ENST00000336648 NPM1P06748 294 aaKnown RBP eCLIP17.41■□□□□ 0.38
HLCS-201ENST00000336648 CHGAP10645 457 aaKnown RBP17.41■□□□□ 0.38
HLCS-201ENST00000336648 FAM9BQ8IZU0 186 aa17.41■□□□□ 0.38
HLCS-201ENST00000336648 ARID3CA6NKF2 412 aa17.4■□□□□ 0.38
HLCS-201ENST00000336648 DCAF1Q9Y4B6 1507 aa17.4■□□□□ 0.38
HLCS-201ENST00000336648 MYH16Q9H6N6 1097 aa17.39■□□□□ 0.37
HLCS-201ENST00000336648 DDX10Q13206 875 aaKnown RBP17.37■□□□□ 0.37
HLCS-201ENST00000336648 TRIM44Q96DX7 344 aaPredicted RBP17.37■□□□□ 0.37
HLCS-201ENST00000336648 DDRGK1Q96HY6 314 aa17.35■□□□□ 0.37
HLCS-201ENST00000336648 BECN1Q14457 450 aa17.32■□□□□ 0.36
HLCS-201ENST00000336648 TSPY4P0CV99 314 aa17.31■□□□□ 0.36
HLCS-201ENST00000336648 TSPY10P0CW01 314 aa17.31■□□□□ 0.36
HLCS-201ENST00000336648 MRS2Q9HD23 443 aa17.31■□□□□ 0.36
HLCS-201ENST00000336648 NCLP19338 710 aaKnown RBP17.29■□□□□ 0.36
HLCS-201ENST00000336648 GOLGA6L22H0YM25 854 aa17.26■□□□□ 0.35
HLCS-201ENST00000336648 SALL2Q9Y467 1007 aaPredicted RBP17.22■□□□□ 0.35
HLCS-201ENST00000336648 EIF4G2P78344 907 aaKnown RBP eCLIP17.21■□□□□ 0.35
HLCS-201ENST00000336648 MTUS2Q5JR59 1369 aa17.2■□□□□ 0.34
HLCS-201ENST00000336648 ERICH6BQ5W0A0 696 aa17.19■□□□□ 0.34
HLCS-201ENST00000336648 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.18■□□□□ 0.34
HLCS-201ENST00000336648 CDCA8Q53HL2 280 aa17.16■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 8.5 ms