RNA–Protein interactions for RNA: ENST00000330588.4

SMG1-201, Transcript of SMG1, nonsense mediated mRNA decay associated PI3K related kinase, humanhuman

TSL 5 BASIC

Gene SMG1, Length 1,588 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG1-201ENST00000330588 AEBP2Q6ZN18 517 aaPredicted RBP23.46■■□□□ 1.35
SMG1-201ENST00000330588 CHIC1Q5VXU3 224 aa22.28■■□□□ 1.16
SMG1-201ENST00000330588 SENP3Q9H4L4 574 aaPredicted RBP19.98■□□□□ 0.79
SMG1-201ENST00000330588 PHF23Q9BUL5 403 aaPredicted RBP19.72■□□□□ 0.75
SMG1-201ENST00000330588 FOXD1Q16676 465 aa18.64■□□□□ 0.57
SMG1-201ENST00000330588 PLPPR3Q6T4P5 718 aa17.78■□□□□ 0.44
SMG1-201ENST00000330588 PPP6R1Q9UPN7 881 aa17.44■□□□□ 0.38
SMG1-201ENST00000330588 MSH5O43196 834 aa17.42■□□□□ 0.38
SMG1-201ENST00000330588 PIAS4Q8N2W9 510 aaPredicted RBP17.36■□□□□ 0.37
SMG1-201ENST00000330588 ADRA2BP18089 450 aa17.35■□□□□ 0.37
SMG1-201ENST00000330588 POTEDQ86YR6 584 aa17.08■□□□□ 0.32
SMG1-201ENST00000330588 MAPK8IP2Q13387 824 aaPredicted RBP15.93■□□□□ 0.14
SMG1-201ENST00000330588 DMRT2Q9Y5R5 561 aa15.87■□□□□ 0.13
SMG1-201ENST00000330588 SCAF1Q9H7N4 1312 aaKnown RBP15.86■□□□□ 0.13
SMG1-201ENST00000330588 NISCHQ9Y2I1 1504 aa15.68■□□□□ 0.1
SMG1-201ENST00000330588 PPP4R3CPQ6ZMV5 832 aa15.58■□□□□ 0.09
SMG1-201ENST00000330588 HOXD11P31277 338 aaPredicted RBP15.31■□□□□ 0.04
SMG1-201ENST00000330588 CNKSR2Q8WXI2 1034 aa15.3■□□□□ 0.04
SMG1-201ENST00000330588 RNF216Q9NWF9 866 aaPredicted RBP15.18■□□□□ 0.02
SMG1-201ENST00000330588 DCAF8L1A6NGE4 600 aa15.08■□□□□ 0
SMG1-201ENST00000330588 NCBP3Q53F19 620 aaKnown RBP14.97□□□□□ -0.01
SMG1-201ENST00000330588 CACNB1Q02641 598 aaPredicted RBP14.9□□□□□ -0.02
SMG1-201ENST00000330588 RNF39Q9H2S5 420 aa14.9□□□□□ -0.02
SMG1-201ENST00000330588 DNAJC5BQ9UF47 199 aa14.83□□□□□ -0.04
SMG1-201ENST00000330588 NPM3O75607 178 aaKnown RBP14.78□□□□□ -0.04
SMG1-201ENST00000330588 C1QBPQ07021 282 aaKnown RBP14.67□□□□□ -0.06
SMG1-201ENST00000330588 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.49□□□□□ -0.092e-12■□□□□ 10.8
SMG1-201ENST00000330588 KCNA4P22459 653 aa14.48□□□□□ -0.09
SMG1-201ENST00000330588 U3KPZ7 1027 aaPredicted RBP14.25□□□□□ -0.13
SMG1-201ENST00000330588 SLC4A2P04920 1241 aa14.13□□□□□ -0.15
SMG1-201ENST00000330588 CCDC180Q9P1Z9 1646 aa14.09□□□□□ -0.15
SMG1-201ENST00000330588 SPINK5Q9NQ38 1064 aaPredicted RBP14.01□□□□□ -0.17
SMG1-201ENST00000330588 CAPN15O75808 1086 aa13.94□□□□□ -0.18
SMG1-201ENST00000330588 DSG3P32926 999 aa13.93□□□□□ -0.18
SMG1-201ENST00000330588 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.82□□□□□ -0.2
SMG1-201ENST00000330588 APLP2Q06481 763 aa13.82□□□□□ -0.2
SMG1-201ENST00000330588 HNRNPUL2Q1KMD3 747 aaKnown RBP13.82□□□□□ -0.2
SMG1-201ENST00000330588 SAMD1Q6SPF0 538 aaPredicted RBP13.75□□□□□ -0.21
SMG1-201ENST00000330588 ZNF219Q9P2Y4 722 aaPredicted RBP13.75□□□□□ -0.21
SMG1-201ENST00000330588 TRHP20396 242 aaPredicted RBP13.72□□□□□ -0.21
SMG1-201ENST00000330588 ABCC9O60706 1549 aa13.71□□□□□ -0.22
SMG1-201ENST00000330588 MYCNP04198 464 aaPredicted RBP13.66□□□□□ -0.22
SMG1-201ENST00000330588 SLC4A1APQ9BWU0 796 aaKnown RBP13.66□□□□□ -0.22
SMG1-201ENST00000330588 ABCB7O75027 752 aa13.62□□□□□ -0.23
SMG1-201ENST00000330588 FOXD4L1Q9NU39 408 aa13.52□□□□□ -0.25
SMG1-201ENST00000330588 POLA2Q14181 598 aa13.39□□□□□ -0.27
SMG1-201ENST00000330588 ATF5Q9Y2D1 282 aaPredicted RBP13.36□□□□□ -0.27
SMG1-201ENST00000330588 ZBTB22O15209 634 aa13.35□□□□□ -0.27
SMG1-201ENST00000330588 POTEHQ6S545 545 aa13.31□□□□□ -0.28
SMG1-201ENST00000330588 RBM42Q9BTD8 480 aaKnown RBP13.27□□□□□ -0.29
SMG1-201ENST00000330588 RB1CC1Q8TDY2 1594 aa13.26□□□□□ -0.29
SMG1-201ENST00000330588 NACADO15069 1562 aa13.24□□□□□ -0.29
SMG1-201ENST00000330588 MYO15BQ96JP2 1530 aa13.21□□□□□ -0.29
SMG1-201ENST00000330588 ATXN8OSP0DMR3 200 aa13.15□□□□□ -0.3
SMG1-201ENST00000330588 ZBTB12Q9Y330 459 aaPredicted RBP13.14□□□□□ -0.31
SMG1-201ENST00000330588 DCAF1Q9Y4B6 1507 aa13.08□□□□□ -0.32
SMG1-201ENST00000330588 ZCCHC6Q5VYS8 1495 aaKnown RBP13.06□□□□□ -0.32
SMG1-201ENST00000330588 AKT1S1Q96B36 256 aa12.99□□□□□ -0.33
SMG1-201ENST00000330588 CHRDL2Q6WN34 429 aa12.98□□□□□ -0.33
SMG1-201ENST00000330588 OSCARQ8IYS5 282 aa12.96□□□□□ -0.33
SMG1-201ENST00000330588 UNC13AQ9UPW8 1703 aa12.92□□□□□ -0.34
SMG1-201ENST00000330588 DCAF8L2P0C7V8 631 aa12.91□□□□□ -0.34
SMG1-201ENST00000330588 REM2Q8IYK8 340 aaPredicted RBP12.86□□□□□ -0.35
SMG1-201ENST00000330588 SHROOM4Q9ULL8 1493 aa12.85□□□□□ -0.35
SMG1-201ENST00000330588 BICRAQ9NZM4 1560 aa12.83□□□□□ -0.36
SMG1-201ENST00000330588 FBLN2P98095 1184 aa12.79□□□□□ -0.36
SMG1-201ENST00000330588 MKRN4PQ13434 485 aaPredicted RBP12.76□□□□□ -0.37
SMG1-201ENST00000330588 SPDYE2BA6NHP3 402 aa12.74□□□□□ -0.37
SMG1-201ENST00000330588 SPDYE6P0CI01 402 aa12.74□□□□□ -0.37
SMG1-201ENST00000330588 SPDYE2Q495Y8 402 aa12.74□□□□□ -0.37
SMG1-201ENST00000330588 CSRNP3Q8WYN3 585 aa12.73□□□□□ -0.37
SMG1-201ENST00000330588 PITPNM1O00562 1244 aa12.72□□□□□ -0.37
SMG1-201ENST00000330588 PABPN1Q86U42 306 aaKnown RBP eCLIP12.71□□□□□ -0.37
SMG1-201ENST00000330588 PIP4P2Q8N4L2 257 aa12.69□□□□□ -0.38
SMG1-201ENST00000330588 SCRIBQ14160 1630 aa12.68□□□□□ -0.38
SMG1-201ENST00000330588 EHMT2Q96KQ7 1210 aa12.65□□□□□ -0.38
SMG1-201ENST00000330588 FXR2P51116 673 aaKnown RBP eCLIP12.64□□□□□ -0.398e-7■□□□□ 10.7
SMG1-201ENST00000330588 SSUH2Q9Y2M2 353 aa12.6□□□□□ -0.39
SMG1-201ENST00000330588 ZNF692Q9BU19 519 aaPredicted RBP12.55□□□□□ -0.4
SMG1-201ENST00000330588 EIF4G1Q04637 1599 aaKnown RBP12.5□□□□□ -0.41
SMG1-201ENST00000330588 SPDYE1Q8NFV5 336 aaPredicted RBP12.5□□□□□ -0.41
SMG1-201ENST00000330588 SP7Q8TDD2 431 aaPredicted RBP12.48□□□□□ -0.41
SMG1-201ENST00000330588 CC2D2AQ9P2K1 1620 aa12.46□□□□□ -0.41
SMG1-201ENST00000330588 CLEC11AQ9Y240 323 aa12.41□□□□□ -0.42
SMG1-201ENST00000330588 HAX1O00165 279 aa12.39□□□□□ -0.43
SMG1-201ENST00000330588 CECR2Q9BXF3 1484 aa12.38□□□□□ -0.43
SMG1-201ENST00000330588 PRKAR2AP13861 404 aaKnown RBP12.36□□□□□ -0.43
SMG1-201ENST00000330588 EVX2Q03828 476 aa12.3□□□□□ -0.44
SMG1-201ENST00000330588 PRR29P0C7W0 189 aa12.25□□□□□ -0.45
SMG1-201ENST00000330588 C19orf67A6NJJ6 358 aa12.23□□□□□ -0.45
SMG1-201ENST00000330588 CHADLQ6NUI6 762 aa12.21□□□□□ -0.46
SMG1-201ENST00000330588 NCAPD3P42695 1498 aa12.2□□□□□ -0.46
SMG1-201ENST00000330588 SMARCA4P51532 1647 aa12.2□□□□□ -0.46
SMG1-201ENST00000330588 BAZ1AQ9NRL2 1556 aaPredicted RBP12.18□□□□□ -0.46
SMG1-201ENST00000330588 SMARCA2P51531 1590 aa12.18□□□□□ -0.46
SMG1-201ENST00000330588 HMGXB3Q12766 1538 aa12.16□□□□□ -0.46
SMG1-201ENST00000330588 PEG3Q9GZU2 1588 aa12.15□□□□□ -0.46
SMG1-201ENST00000330588 ATAD2BQ9ULI0 1458 aa12.14□□□□□ -0.47
SMG1-201ENST00000330588 SPDYE4A6NLX3 237 aa12.11□□□□□ -0.47
SMG1-201ENST00000330588 FARP1Q9Y4F1 1045 aaPredicted RBP12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms