RNA–Protein interactions for RNA: ENST00000328642.11

SYNM-201, Transcript of synemin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNM, Length 3,960 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNM-201ENST00000328642 NISCHQ9Y2I1 1504 aa30.48■■■□□ 2.47
SYNM-201ENST00000328642 DCAF8L2P0C7V8 631 aa29.33■■■□□ 2.29
SYNM-201ENST00000328642 SHROOM4Q9ULL8 1493 aa28.39■■■□□ 2.14
SYNM-201ENST00000328642 SUPT5HO00267 1087 aaKnown RBP28.18■■■□□ 2.1
SYNM-201ENST00000328642 EHMT2Q96KQ7 1210 aa27.03■■□□□ 1.92
SYNM-201ENST00000328642 FAM9AQ8IZU1 332 aaPredicted RBP26.47■■□□□ 1.83
SYNM-201ENST00000328642 PCGF6Q9BYE7 350 aa25.94■■□□□ 1.74
SYNM-201ENST00000328642 TTBK1Q5TCY1 1321 aaPredicted RBP25.94■■□□□ 1.74
SYNM-201ENST00000328642 ABCC9O60706 1549 aa25.9■■□□□ 1.74
SYNM-201ENST00000328642 TRIM41Q8WV44 630 aa25.84■■□□□ 1.73
SYNM-201ENST00000328642 CHIC1Q5VXU3 224 aa25.79■■□□□ 1.72
SYNM-201ENST00000328642 LOC105371045A0A1W2PR82 267 aa25.78■■□□□ 1.72
SYNM-201ENST00000328642 RANGAP1P46060 587 aaPredicted RBP25.68■■□□□ 1.7
SYNM-201ENST00000328642 PPARGC1BQ86YN6 1023 aaKnown RBP25.62■■□□□ 1.69
SYNM-201ENST00000328642 PABPN1Q86U42 306 aaKnown RBP eCLIP25.54■■□□□ 1.68
SYNM-201ENST00000328642 ZCCHC6Q5VYS8 1495 aaKnown RBP25.36■■□□□ 1.65
SYNM-201ENST00000328642 UBTFP17480 764 aaKnown RBP25.21■■□□□ 1.63
SYNM-201ENST00000328642 SCRIBQ14160 1630 aa25.02■■□□□ 1.6
SYNM-201ENST00000328642 APLP2Q06481 763 aa25.01■■□□□ 1.59
SYNM-201ENST00000328642 CCDC180Q9P1Z9 1646 aa24.97■■□□□ 1.59
SYNM-201ENST00000328642 ATP1B4Q9UN42 357 aaPredicted RBP24.86■■□□□ 1.57
SYNM-201ENST00000328642 CCER1Q8TC90 406 aaPredicted RBP24.78■■□□□ 1.56
SYNM-201ENST00000328642 TRIM26Q12899 539 aaPredicted RBP24.72■■□□□ 1.55
SYNM-201ENST00000328642 HRCP23327 699 aa24.64■■□□□ 1.54
SYNM-201ENST00000328642 MYO15BQ96JP2 1530 aa24.6■■□□□ 1.53
SYNM-201ENST00000328642 HNRNPUL2Q1KMD3 747 aaKnown RBP24.47■■□□□ 1.51
SYNM-201ENST00000328642 ITGAEP38570 1179 aa24.46■■□□□ 1.51
SYNM-201ENST00000328642 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.46■■□□□ 1.51
SYNM-201ENST00000328642 RSF1Q96T23 1441 aaPredicted RBP24.42■■□□□ 1.5
SYNM-201ENST00000328642 CECR2Q9BXF3 1484 aa24.33■■□□□ 1.49
SYNM-201ENST00000328642 ZEB1P37275 1124 aaPredicted RBP24.22■■□□□ 1.47
SYNM-201ENST00000328642 CSRNP3Q8WYN3 585 aa24.14■■□□□ 1.45
SYNM-201ENST00000328642 YTHDC1Q96MU7 727 aaKnown RBP24.1■■□□□ 1.45
SYNM-201ENST00000328642 P3H3Q8IVL6 736 aa24.03■■□□□ 1.44
SYNM-201ENST00000328642 DCAF1Q9Y4B6 1507 aa24■■□□□ 1.43
SYNM-201ENST00000328642 RB1CC1Q8TDY2 1594 aa24■■□□□ 1.43
SYNM-201ENST00000328642 NACADO15069 1562 aa23.97■■□□□ 1.43
SYNM-201ENST00000328642 MROH2BQ7Z745 1585 aa23.91■■□□□ 1.42
SYNM-201ENST00000328642 ARID3CA6NKF2 412 aa23.85■■□□□ 1.41
SYNM-201ENST00000328642 FAM50AQ14320 339 aaKnown RBP23.77■■□□□ 1.4
SYNM-201ENST00000328642 FBLN2P98095 1184 aa23.68■■□□□ 1.38
SYNM-201ENST00000328642 CNGB1Q14028 1251 aaPredicted RBP23.62■■□□□ 1.37
SYNM-201ENST00000328642 WIZO95785 1651 aa23.62■■□□□ 1.37
SYNM-201ENST00000328642 CENPBP07199 599 aaPredicted RBP23.58■■□□□ 1.37
SYNM-201ENST00000328642 SOGA1O94964 1423 aa23.57■■□□□ 1.36
SYNM-201ENST00000328642 BAZ1AQ9NRL2 1556 aaPredicted RBP23.57■■□□□ 1.36
SYNM-201ENST00000328642 DIEXFQ68CQ4 756 aaKnown RBP23.57■■□□□ 1.36
SYNM-201ENST00000328642 NEUROD1Q13562 356 aa23.56■■□□□ 1.36
SYNM-201ENST00000328642 ABCC8Q09428 1581 aa23.56■■□□□ 1.36
SYNM-201ENST00000328642 CCDC88BA6NC98 1476 aa23.51■■□□□ 1.35
SYNM-201ENST00000328642 BAZ1BQ9UIG0 1483 aaKnown RBP23.51■■□□□ 1.35
SYNM-201ENST00000328642 WRNQ14191 1432 aaPredicted RBP eCLIP23.49■■□□□ 1.35
SYNM-201ENST00000328642 POLR3GLQ9BT43 218 aa23.42■■□□□ 1.34
SYNM-201ENST00000328642 CEP162Q5TB80 1403 aa23.4■■□□□ 1.34
SYNM-201ENST00000328642 CLIP1P30622 1438 aa23.32■■□□□ 1.32
SYNM-201ENST00000328642 TRIM52Q96A61 297 aa23.32■■□□□ 1.32
SYNM-201ENST00000328642 MYT1LQ9UL68 1186 aa23.3■■□□□ 1.32
SYNM-201ENST00000328642 RUSC2Q8N2Y8 1516 aa23.24■■□□□ 1.31
SYNM-201ENST00000328642 ZNF316A6NFI3 1004 aaPredicted RBP23.16■■□□□ 1.3
SYNM-201ENST00000328642 GOLGA3Q08378 1498 aa23.15■■□□□ 1.3
SYNM-201ENST00000328642 ZNF777Q9ULD5 760 aaPredicted RBP23.15■■□□□ 1.3
SYNM-201ENST00000328642 CHIC2Q9UKJ5 165 aa23.14■■□□□ 1.3
SYNM-201ENST00000328642 TNIKQ9UKE5 1360 aa23.13■■□□□ 1.29
SYNM-201ENST00000328642 ZNF326Q5BKZ1 582 aaKnown RBP23.1■■□□□ 1.29
SYNM-201ENST00000328642 HIRIP3Q9BW71 556 aaPredicted RBP23.08■■□□□ 1.29
SYNM-201ENST00000328642 SMARCA4P51532 1647 aa23.07■■□□□ 1.28
SYNM-201ENST00000328642 TOP2AP11388 1531 aaKnown RBP23.05■■□□□ 1.28
SYNM-201ENST00000328642 ATAD2BQ9ULI0 1458 aa23.04■■□□□ 1.28
SYNM-201ENST00000328642 EEA1Q15075 1411 aa23■■□□□ 1.27
SYNM-201ENST00000328642 KANK4Q5T7N3 995 aaPredicted RBP22.99■■□□□ 1.27
SYNM-201ENST00000328642 GTF3C3Q9Y5Q9 886 aa22.99■■□□□ 1.27
SYNM-201ENST00000328642 KIF27Q86VH2 1401 aa22.98■■□□□ 1.27
SYNM-201ENST00000328642 CEP164Q9UPV0 1460 aa22.97■■□□□ 1.27
SYNM-201ENST00000328642 PELP1Q8IZL8 1130 aaKnown RBP22.96■■□□□ 1.27
SYNM-201ENST00000328642 CUX2O14529 1486 aa22.93■■□□□ 1.26
SYNM-201ENST00000328642 RRP7BPQ9NSQ0 103 aa22.86■■□□□ 1.25
SYNM-201ENST00000328642 CHMP7Q8WUX9 453 aaPredicted RBP22.86■■□□□ 1.25
SYNM-201ENST00000328642 TDRD9Q8NDG6 1382 aaKnown RBP22.85■■□□□ 1.25
SYNM-201ENST00000328642 SMARCA2P51531 1590 aa22.84■■□□□ 1.25
SYNM-201ENST00000328642 RAPGEF2Q9Y4G8 1499 aa22.83■■□□□ 1.25
SYNM-201ENST00000328642 BCANQ96GW7 911 aa22.82■■□□□ 1.24
SYNM-201ENST00000328642 MTUS2Q5JR59 1369 aa22.82■■□□□ 1.24
SYNM-201ENST00000328642 DDX10Q13206 875 aaKnown RBP22.82■■□□□ 1.24
SYNM-201ENST00000328642 MIER1Q8N108 512 aa22.82■■□□□ 1.24
SYNM-201ENST00000328642 CARMIL1Q5VZK9 1371 aa22.82■■□□□ 1.24
SYNM-201ENST00000328642 NEFLP07196 543 aa22.82■■□□□ 1.24
SYNM-201ENST00000328642 SIN3AQ96ST3 1273 aa22.77■■□□□ 1.24
SYNM-201ENST00000328642 DNAJC5BQ9UF47 199 aa22.74■■□□□ 1.23
SYNM-201ENST00000328642 ACIN1Q9UKV3 1341 aaKnown RBP22.73■■□□□ 1.23
SYNM-201ENST00000328642 CADPSQ9ULU8 1353 aa22.69■■□□□ 1.22
SYNM-201ENST00000328642 CDK11AQ9UQ88 783 aaPredicted RBP22.65■■□□□ 1.22
SYNM-201ENST00000328642 VPS8Q8N3P4 1428 aa22.65■■□□□ 1.22
SYNM-201ENST00000328642 SLC4A1APQ9BWU0 796 aaKnown RBP22.62■■□□□ 1.21
SYNM-201ENST00000328642 KCNH8Q96L42 1107 aa22.61■■□□□ 1.21
SYNM-201ENST00000328642 GRWD1Q9BQ67 446 aaKnown RBP eCLIP22.61■■□□□ 1.21
SYNM-201ENST00000328642 TONSLQ96HA7 1378 aa22.61■■□□□ 1.21
SYNM-201ENST00000328642 ANP32CO43423 234 aa22.61■■□□□ 1.21
SYNM-201ENST00000328642 SCAF1Q9H7N4 1312 aaKnown RBP22.59■■□□□ 1.21
SYNM-201ENST00000328642 SENP3-EIF4A1A0A087X0R7 540 aa22.58■■□□□ 1.21
SYNM-201ENST00000328642 SENP3Q9H4L4 574 aaPredicted RBP22.54■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 69.9 ms