RNA–Protein interactions for RNA: ENST00000327367.8

SMAD3-201, Transcript of SMAD family member 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMAD3, Length 6,247 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD3-201ENST00000327367 DCAF8L2P0C7V8 631 aa27.36■■□□□ 1.97
SMAD3-201ENST00000327367 PELP1Q8IZL8 1130 aaKnown RBP26.75■■□□□ 1.87
SMAD3-201ENST00000327367 SUPT5HO00267 1087 aaKnown RBP26.58■■□□□ 1.85
SMAD3-201ENST00000327367 EHMT2Q96KQ7 1210 aa26.52■■□□□ 1.84
SMAD3-201ENST00000327367 ERICH6Q7L0X2 663 aa26.1■■□□□ 1.77
SMAD3-201ENST00000327367 PCGF6Q9BYE7 350 aa25.79■■□□□ 1.72
SMAD3-201ENST00000327367 SHROOM4Q9ULL8 1493 aa25.77■■□□□ 1.72
SMAD3-201ENST00000327367 TTBK1Q5TCY1 1321 aaPredicted RBP25.72■■□□□ 1.71
SMAD3-201ENST00000327367 CENPBP07199 599 aaPredicted RBP25.65■■□□□ 1.7
SMAD3-201ENST00000327367 MYT1Q01538 1121 aa25.62■■□□□ 1.69
SMAD3-201ENST00000327367 CCER1Q8TC90 406 aaPredicted RBP25.51■■□□□ 1.67
SMAD3-201ENST00000327367 YTHDC1Q96MU7 727 aaKnown RBP25.45■■□□□ 1.66
SMAD3-201ENST00000327367 APLP2Q06481 763 aa25.32■■□□□ 1.64
SMAD3-201ENST00000327367 FAM9AQ8IZU1 332 aaPredicted RBP25.3■■□□□ 1.64
SMAD3-201ENST00000327367 NEFLP07196 543 aa25.04■■□□□ 1.6
SMAD3-201ENST00000327367 ZEB1P37275 1124 aaPredicted RBP25■■□□□ 1.59
SMAD3-201ENST00000327367 RANGAP1P46060 587 aaPredicted RBP24.91■■□□□ 1.58
SMAD3-201ENST00000327367 PPARGC1BQ86YN6 1023 aaKnown RBP24.6■■□□□ 1.53
SMAD3-201ENST00000327367 DAXXQ9UER7 740 aaPredicted RBP24.53■■□□□ 1.52
SMAD3-201ENST00000327367 ATP1B4Q9UN42 357 aaPredicted RBP24.5■■□□□ 1.51
SMAD3-201ENST00000327367 HRCP23327 699 aa24.39■■□□□ 1.5
SMAD3-201ENST00000327367 TRIM41Q8WV44 630 aa24.26■■□□□ 1.47
SMAD3-201ENST00000327367 RTL5Q5HYW3 569 aaPredicted RBP24.2■■□□□ 1.46
SMAD3-201ENST00000327367 CNGB1Q14028 1251 aaPredicted RBP24.2■■□□□ 1.46
SMAD3-201ENST00000327367 UBTFP17480 764 aaKnown RBP24.15■■□□□ 1.46
SMAD3-201ENST00000327367 POLR3GLQ9BT43 218 aa24.13■■□□□ 1.45
SMAD3-201ENST00000327367 TRIM26Q12899 539 aaPredicted RBP24.09■■□□□ 1.45
SMAD3-201ENST00000327367 ZNF316A6NFI3 1004 aaPredicted RBP24.01■■□□□ 1.43
SMAD3-201ENST00000327367 NISCHQ9Y2I1 1504 aa23.99■■□□□ 1.43
SMAD3-201ENST00000327367 BCANQ96GW7 911 aa23.98■■□□□ 1.43
SMAD3-201ENST00000327367 ITGAEP38570 1179 aa23.91■■□□□ 1.42
SMAD3-201ENST00000327367 GTF3C3Q9Y5Q9 886 aa23.9■■□□□ 1.42
SMAD3-201ENST00000327367 DIEXFQ68CQ4 756 aaKnown RBP23.82■■□□□ 1.4
SMAD3-201ENST00000327367 CLSPNQ9HAW4 1339 aa23.79■■□□□ 1.4
SMAD3-201ENST00000327367 HNRNPUL2Q1KMD3 747 aaKnown RBP23.74■■□□□ 1.39
SMAD3-201ENST00000327367 LOC105371045A0A1W2PR82 267 aa23.69■■□□□ 1.38
SMAD3-201ENST00000327367 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.69■■□□□ 1.38
SMAD3-201ENST00000327367 EIF5BO60841 1220 aaKnown RBP23.64■■□□□ 1.37
SMAD3-201ENST00000327367 CDK11AQ9UQ88 783 aaPredicted RBP23.47■■□□□ 1.35
SMAD3-201ENST00000327367 SLC4A1APQ9BWU0 796 aaKnown RBP23.44■■□□□ 1.34
SMAD3-201ENST00000327367 CHIC1Q5VXU3 224 aa23.35■■□□□ 1.33
SMAD3-201ENST00000327367 MYT1LQ9UL68 1186 aa23.31■■□□□ 1.32
SMAD3-201ENST00000327367 BCL11AQ9H165 835 aa23.3■■□□□ 1.32
SMAD3-201ENST00000327367 NPM2Q86SE8 214 aaKnown RBP23.26■■□□□ 1.31
SMAD3-201ENST00000327367 ACIN1Q9UKV3 1341 aaKnown RBP23.26■■□□□ 1.31
SMAD3-201ENST00000327367 NEUROD1Q13562 356 aa23.17■■□□□ 1.3
SMAD3-201ENST00000327367 ANP32AP39687 249 aaKnown RBP23.11■■□□□ 1.29
SMAD3-201ENST00000327367 NBR1Q14596 966 aa23.06■■□□□ 1.28
SMAD3-201ENST00000327367 ANP32CO43423 234 aa23.04■■□□□ 1.28
SMAD3-201ENST00000327367 GLIPR1L2Q4G1C9 344 aa23.03■■□□□ 1.28
SMAD3-201ENST00000327367 ARXQ96QS3 562 aa22.96■■□□□ 1.27
SMAD3-201ENST00000327367 FAM50AQ14320 339 aaKnown RBP22.95■■□□□ 1.26
SMAD3-201ENST00000327367 FKBP8Q14318 412 aa22.93■■□□□ 1.26
SMAD3-201ENST00000327367 ZBTB47Q9UFB7 747 aaPredicted RBP22.9■■□□□ 1.26
SMAD3-201ENST00000327367 CANXP27824 592 aaKnown RBP22.9■■□□□ 1.26
SMAD3-201ENST00000327367 ZNF326Q5BKZ1 582 aaKnown RBP22.88■■□□□ 1.25
SMAD3-201ENST00000327367 TRIM52Q96A61 297 aa22.88■■□□□ 1.25
SMAD3-201ENST00000327367 ANP32BQ92688 251 aaKnown RBP22.78■■□□□ 1.24
SMAD3-201ENST00000327367 SCAF1Q9H7N4 1312 aaKnown RBP22.76■■□□□ 1.23
SMAD3-201ENST00000327367 SLC24A1O60721 1099 aa22.74■■□□□ 1.23
SMAD3-201ENST00000327367 HSP90AA1P07900 732 aaKnown RBP22.63■■□□□ 1.21
SMAD3-201ENST00000327367 RTN4Q9NQC3 1192 aaKnown RBP22.54■■□□□ 1.2
SMAD3-201ENST00000327367 IRX6P78412 446 aaPredicted RBP22.52■■□□□ 1.19
SMAD3-201ENST00000327367 SALL2Q9Y467 1007 aaPredicted RBP22.48■■□□□ 1.19
SMAD3-201ENST00000327367 HNRNPUQ00839 825 aaKnown RBP eCLIP22.47■■□□□ 1.192e-6■■□□□ 14.1
SMAD3-201ENST00000327367 FAM9BQ8IZU0 186 aa22.43■■□□□ 1.18
SMAD3-201ENST00000327367 UPF2Q9HAU5 1272 aaKnown RBP22.38■■□□□ 1.17
SMAD3-201ENST00000327367 CCDC136Q96JN2 1154 aa22.37■■□□□ 1.17
SMAD3-201ENST00000327367 ANP32EQ9BTT0 268 aa22.37■■□□□ 1.17
SMAD3-201ENST00000327367 DDX10Q13206 875 aaKnown RBP22.32■■□□□ 1.16
SMAD3-201ENST00000327367 NEFMP07197 916 aa22.26■■□□□ 1.15
SMAD3-201ENST00000327367 AMER1Q5JTC6 1135 aaPredicted RBP22.24■■□□□ 1.15
SMAD3-201ENST00000327367 NAP1L5Q96NT1 182 aaPredicted RBP22.2■■□□□ 1.14
SMAD3-201ENST00000327367 MIER1Q8N108 512 aa22.19■■□□□ 1.14
SMAD3-201ENST00000327367 TRIM44Q96DX7 344 aaPredicted RBP22.19■■□□□ 1.14
SMAD3-201ENST00000327367 TNNT2P45379 298 aaPredicted RBP22.15■■□□□ 1.14
SMAD3-201ENST00000327367 ARID3CA6NKF2 412 aa22.12■■□□□ 1.13
SMAD3-201ENST00000327367 TPRNQ4KMQ1 711 aa22.09■■□□□ 1.13
SMAD3-201ENST00000327367 LAS1LQ9Y4W2 734 aaKnown RBP22.09■■□□□ 1.13
SMAD3-201ENST00000327367 SENP3-EIF4A1A0A087X0R7 540 aa22.07■■□□□ 1.12
SMAD3-201ENST00000327367 NCLP19338 710 aaKnown RBP22.04■■□□□ 1.12
SMAD3-201ENST00000327367 P3H3Q8IVL6 736 aa22.04■■□□□ 1.12
SMAD3-201ENST00000327367 HIRIP3Q9BW71 556 aaPredicted RBP22.03■■□□□ 1.12
SMAD3-201ENST00000327367 DNTTIP2Q5QJE6 756 aaKnown RBP22.01■■□□□ 1.11
SMAD3-201ENST00000327367 GOLGA6L2Q8N9W4 650 aaPredicted RBP22■■□□□ 1.11
SMAD3-201ENST00000327367 ARID4BQ4LE39 1312 aaPredicted RBP21.99■■□□□ 1.11
SMAD3-201ENST00000327367 PTMAP06454 111 aaKnown RBP21.97■■□□□ 1.11
SMAD3-201ENST00000327367 TMC1Q8TDI8 760 aa21.96■■□□□ 1.11
SMAD3-201ENST00000327367 DDRGK1Q96HY6 314 aa21.95■■□□□ 1.11
SMAD3-201ENST00000327367 ZBTB4Q9P1Z0 1013 aaPredicted RBP21.95■■□□□ 1.1
SMAD3-201ENST00000327367 MRS2Q9HD23 443 aa21.95■■□□□ 1.1
SMAD3-201ENST00000327367 CDK11BP21127 795 aaKnown RBP21.94■■□□□ 1.1
SMAD3-201ENST00000327367 TONSLQ96HA7 1378 aa21.94■■□□□ 1.1
SMAD3-201ENST00000327367 ERICH6BQ5W0A0 696 aa21.91■■□□□ 1.1
SMAD3-201ENST00000327367 ZNF777Q9ULD5 760 aaPredicted RBP21.89■■□□□ 1.1
SMAD3-201ENST00000327367 BECN1Q14457 450 aa21.89■■□□□ 1.09
SMAD3-201ENST00000327367 DEKP35659 375 aaKnown RBP21.88■■□□□ 1.09
SMAD3-201ENST00000327367 NOP58Q9Y2X3 529 aaKnown RBP21.83■■□□□ 1.08
SMAD3-201ENST00000327367 SUPT16HQ9Y5B9 1047 aaKnown RBP21.82■■□□□ 1.08
SMAD3-201ENST00000327367 WDR43Q15061 677 aaKnown RBP eCLIP21.81■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 62.2 ms