RNA–Protein interactions for RNA: ENST00000326195.12

ABCF1-201, Transcript of ATP binding cassette subfamily F member 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene ABCF1, Length 3,481 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ABCF1-201ENST00000326195 NISCHQ9Y2I1 1504 aa22.14■■□□□ 1.14
ABCF1-201ENST00000326195 DCAF8L2P0C7V8 631 aa19.66■□□□□ 0.74
ABCF1-201ENST00000326195 ABCC9O60706 1549 aa19.19■□□□□ 0.66
ABCF1-201ENST00000326195 CCDC180Q9P1Z9 1646 aa18.98■□□□□ 0.63
ABCF1-201ENST00000326195 SHROOM4Q9ULL8 1493 aa18.85■□□□□ 0.61
ABCF1-201ENST00000326195 ZCCHC6Q5VYS8 1495 aaKnown RBP18.43■□□□□ 0.54
ABCF1-201ENST00000326195 PABPN1Q86U42 306 aaKnown RBP eCLIP18.37■□□□□ 0.53
ABCF1-201ENST00000326195 SCRIBQ14160 1630 aa18.11■□□□□ 0.49
ABCF1-201ENST00000326195 SUPT5HO00267 1087 aaKnown RBP18.07■□□□□ 0.48
ABCF1-201ENST00000326195 RB1CC1Q8TDY2 1594 aa18.02■□□□□ 0.47
ABCF1-201ENST00000326195 NACADO15069 1562 aa17.98■□□□□ 0.47
ABCF1-201ENST00000326195 DCAF1Q9Y4B6 1507 aa17.86■□□□□ 0.45
ABCF1-201ENST00000326195 MYO15BQ96JP2 1530 aa17.67■□□□□ 0.42
ABCF1-201ENST00000326195 CECR2Q9BXF3 1484 aa17.56■□□□□ 0.4
ABCF1-201ENST00000326195 UNC13AQ9UPW8 1703 aa17.48■□□□□ 0.39
ABCF1-201ENST00000326195 BICRAQ9NZM4 1560 aa17.46■□□□□ 0.38
ABCF1-201ENST00000326195 DNAJC5BQ9UF47 199 aa17.37■□□□□ 0.37
ABCF1-201ENST00000326195 MROH2BQ7Z745 1585 aa17.27■□□□□ 0.36
ABCF1-201ENST00000326195 RSF1Q96T23 1441 aaPredicted RBP17.25■□□□□ 0.35
ABCF1-201ENST00000326195 HRCP23327 699 aa17.23■□□□□ 0.35
ABCF1-201ENST00000326195 WIZO95785 1651 aa17.09■□□□□ 0.33
ABCF1-201ENST00000326195 EIF4G1Q04637 1599 aaKnown RBP17.08■□□□□ 0.32
ABCF1-201ENST00000326195 BAZ1AQ9NRL2 1556 aaPredicted RBP17.07■□□□□ 0.32
ABCF1-201ENST00000326195 PPARGC1BQ86YN6 1023 aaKnown RBP17.06■□□□□ 0.32
ABCF1-201ENST00000326195 SMARCA4P51532 1647 aa17.02■□□□□ 0.32
ABCF1-201ENST00000326195 EHMT2Q96KQ7 1210 aa17■□□□□ 0.31
ABCF1-201ENST00000326195 ATAD2BQ9ULI0 1458 aa16.97■□□□□ 0.31
ABCF1-201ENST00000326195 CC2D2AQ9P2K1 1620 aa16.96■□□□□ 0.31
ABCF1-201ENST00000326195 BAZ1BQ9UIG0 1483 aaKnown RBP16.96■□□□□ 0.31
ABCF1-201ENST00000326195 FAM9AQ8IZU1 332 aaPredicted RBP16.86■□□□□ 0.29
ABCF1-201ENST00000326195 PCGF6Q9BYE7 350 aa16.84■□□□□ 0.29
ABCF1-201ENST00000326195 PELP1Q8IZL8 1130 aaKnown RBP16.79■□□□□ 0.28
ABCF1-201ENST00000326195 SMARCA2P51531 1590 aa16.78■□□□□ 0.28
ABCF1-201ENST00000326195 CCDC88BA6NC98 1476 aa16.78■□□□□ 0.28
ABCF1-201ENST00000326195 TRIM41Q8WV44 630 aa16.74■□□□□ 0.27
ABCF1-201ENST00000326195 NCAPD3P42695 1498 aa16.73■□□□□ 0.27
ABCF1-201ENST00000326195 CHIC1Q5VXU3 224 aa16.71■□□□□ 0.26
ABCF1-201ENST00000326195 TOP2AP11388 1531 aaKnown RBP16.68■□□□□ 0.26
ABCF1-201ENST00000326195 NESP48681 1621 aa16.68■□□□□ 0.26
ABCF1-201ENST00000326195 SCAF1Q9H7N4 1312 aaKnown RBP16.55■□□□□ 0.24
ABCF1-201ENST00000326195 CADPSQ9ULU8 1353 aa16.52■□□□□ 0.24
ABCF1-201ENST00000326195 RANGAP1P46060 587 aaPredicted RBP16.51■□□□□ 0.23
ABCF1-201ENST00000326195 PEG3Q9GZU2 1588 aa16.51■□□□□ 0.23
ABCF1-201ENST00000326195 HMGXB3Q12766 1538 aa16.5■□□□□ 0.23
ABCF1-201ENST00000326195 ABCC8Q09428 1581 aa16.49■□□□□ 0.23
ABCF1-201ENST00000326195 ERCC6Q03468 1493 aa16.46■□□□□ 0.23
ABCF1-201ENST00000326195 LOC105371045A0A1W2PR82 267 aa16.43■□□□□ 0.22
ABCF1-201ENST00000326195 FANCD2Q9BXW9 1451 aa16.35■□□□□ 0.21
ABCF1-201ENST00000326195 CFTRP13569 1480 aa16.33■□□□□ 0.21
ABCF1-201ENST00000326195 WRNQ14191 1432 aaPredicted RBP eCLIP16.32■□□□□ 0.2
ABCF1-201ENST00000326195 PDS5BQ9NTI5 1447 aa16.31■□□□□ 0.2
ABCF1-201ENST00000326195 FBLN2P98095 1184 aa16.3■□□□□ 0.2
ABCF1-201ENST00000326195 CEP164Q9UPV0 1460 aa16.24■□□□□ 0.19
ABCF1-201ENST00000326195 TTBK1Q5TCY1 1321 aaPredicted RBP16.23■□□□□ 0.19
ABCF1-201ENST00000326195 UBTFP17480 764 aaKnown RBP16.23■□□□□ 0.19
ABCF1-201ENST00000326195 TDRD9Q8NDG6 1382 aaKnown RBP16.21■□□□□ 0.19
ABCF1-201ENST00000326195 SOGA1O94964 1423 aa16.2■□□□□ 0.18
ABCF1-201ENST00000326195 RAD54L2Q9Y4B4 1467 aa16.18■□□□□ 0.18
ABCF1-201ENST00000326195 RUSC2Q8N2Y8 1516 aa16.16■□□□□ 0.18
ABCF1-201ENST00000326195 MYT1Q01538 1121 aa16.12■□□□□ 0.17
ABCF1-201ENST00000326195 SYNJ1O43426 1573 aa16.12■□□□□ 0.17
ABCF1-201ENST00000326195 LAMC3Q9Y6N6 1575 aa16.12■□□□□ 0.17
ABCF1-201ENST00000326195 CUX1P39880 1505 aa16.11■□□□□ 0.17
ABCF1-201ENST00000326195 CSRNP3Q8WYN3 585 aa16.1■□□□□ 0.17
ABCF1-201ENST00000326195 URB2Q14146 1524 aaKnown RBP16.1■□□□□ 0.17
ABCF1-201ENST00000326195 KIF21AQ7Z4S6 1674 aa16.09■□□□□ 0.17
ABCF1-201ENST00000326195 TRIM26Q12899 539 aaPredicted RBP16.09■□□□□ 0.17
ABCF1-201ENST00000326195 FGD5Q6ZNL6 1462 aa16.08■□□□□ 0.16
ABCF1-201ENST00000326195 CUX2O14529 1486 aa16.07■□□□□ 0.16
ABCF1-201ENST00000326195 TOPBP1Q92547 1522 aa16.05■□□□□ 0.16
ABCF1-201ENST00000326195 AQRO60306 1485 aaKnown RBP eCLIP16.05■□□□□ 0.163e-7■■■■□ 24
ABCF1-201ENST00000326195 P3H3Q8IVL6 736 aa16.03■□□□□ 0.16
ABCF1-201ENST00000326195 MRC2Q9UBG0 1479 aa16.02■□□□□ 0.15
ABCF1-201ENST00000326195 POLA1P09884 1462 aaPredicted RBP16■□□□□ 0.15
ABCF1-201ENST00000326195 NEUROD1Q13562 356 aa16■□□□□ 0.15
ABCF1-201ENST00000326195 ATP1B4Q9UN42 357 aaPredicted RBP15.99■□□□□ 0.15
ABCF1-201ENST00000326195 CHMP7Q8WUX9 453 aaPredicted RBP15.97■□□□□ 0.15
ABCF1-201ENST00000326195 ZNF608Q9ULD9 1512 aaPredicted RBP15.96■□□□□ 0.15
ABCF1-201ENST00000326195 ACIN1Q9UKV3 1341 aaKnown RBP15.96■□□□□ 0.15
ABCF1-201ENST00000326195 ARID3CA6NKF2 412 aa15.92■□□□□ 0.14
ABCF1-201ENST00000326195 KIF27Q86VH2 1401 aa15.92■□□□□ 0.14
ABCF1-201ENST00000326195 ZEB1P37275 1124 aaPredicted RBP15.91■□□□□ 0.14
ABCF1-201ENST00000326195 GTF3C3Q9Y5Q9 886 aa15.9■□□□□ 0.14
ABCF1-201ENST00000326195 DNMBPQ6XZF7 1577 aa15.89■□□□□ 0.13
ABCF1-201ENST00000326195 TOP2BQ02880 1626 aa15.88■□□□□ 0.13
ABCF1-201ENST00000326195 IGF1RP08069 1367 aa15.84■□□□□ 0.13
ABCF1-201ENST00000326195 CARMIL1Q5VZK9 1371 aa15.84■□□□□ 0.13
ABCF1-201ENST00000326195 GAPVD1Q14C86 1478 aa15.82■□□□□ 0.12
ABCF1-201ENST00000326195 RAPGEF2Q9Y4G8 1499 aa15.78■□□□□ 0.12
ABCF1-201ENST00000326195 THOC2Q8NI27 1593 aaKnown RBP15.75■□□□□ 0.11
ABCF1-201ENST00000326195 WDR62O43379 1518 aa15.75■□□□□ 0.11
ABCF1-201ENST00000326195 IFT140Q96RY7 1462 aa15.75■□□□□ 0.11
ABCF1-201ENST00000326195 PRDM2Q13029 1718 aa15.75■□□□□ 0.11
ABCF1-201ENST00000326195 BIVM-ERCC5R4GMW8 1640 aa15.72■□□□□ 0.11
ABCF1-201ENST00000326195 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.71■□□□□ 0.11
ABCF1-201ENST00000326195 HNRNPUL2Q1KMD3 747 aaKnown RBP15.71■□□□□ 0.11
ABCF1-201ENST00000326195 ABCA10Q8WWZ4 1543 aa15.7■□□□□ 0.1
ABCF1-201ENST00000326195 SNAPC4Q5SXM2 1469 aa15.7■□□□□ 0.1
ABCF1-201ENST00000326195 GRIN2BQ13224 1484 aa15.65■□□□□ 0.1
ABCF1-201ENST00000326195 EEA1Q15075 1411 aa15.63■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms