RNA–Protein interactions for RNA: ENST00000326195.12

ABCF1-201, Transcript of ATP binding cassette subfamily F member 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene ABCF1, Length 3,481 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ABCF1-201ENST00000326195 SF3B1O75533 1304 aaKnown RBP eCLIP10.51□□□□□ -0.732e-6■■■■■ 102.7
ABCF1-201ENST00000326195 UTP3Q9NQZ2 479 aaKnown RBP eCLIP11.08□□□□□ -0.643e-9■■■■■ 68.1
ABCF1-201ENST00000326195 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP10.87□□□□□ -0.675e-6■■■■■ 55.7
ABCF1-201ENST00000326195 PCBP2Q15366 365 aaKnown RBP eCLIP9.79□□□□□ -0.845e-26■■■■■ 53.2
ABCF1-201ENST00000326195 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP11.83□□□□□ -0.523e-9■■■■■ 44.4
ABCF1-201ENST00000326195 SDAD1Q9NVU7 687 aaKnown RBP eCLIP10.89□□□□□ -0.678e-7■■■■■ 40.9
ABCF1-201ENST00000326195 TBRG4Q969Z0 631 aaKnown RBP eCLIP10.03□□□□□ -0.83e-7■■■■■ 38.6
ABCF1-201ENST00000326195 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.65□□□□□ -0.382e-6■■■■■ 31.6
ABCF1-201ENST00000326195 CPEB4Q17RY0 729 aaKnown RBP eCLIP9.07□□□□□ -0.964e-7■■■■■ 30.9
ABCF1-201ENST00000326195 PCBP1Q15365 356 aaKnown RBP eCLIP10.53□□□□□ -0.723e-9■■■■■ 30.2
ABCF1-201ENST00000326195 UPF1Q92900 1129 aaKnown RBP eCLIP12.39□□□□□ -0.432e-6■■■■■ 28.9
ABCF1-201ENST00000326195 TRA2AQ13595 282 aaKnown RBP eCLIP9.24□□□□□ -0.931e-7■■■■■ 27
ABCF1-201ENST00000326195 DDX3XO00571 662 aaKnown RBP eCLIP10.82□□□□□ -0.686e-21■■■■■ 26.8
ABCF1-201ENST00000326195 RBM15Q96T37 977 aaKnown RBP eCLIP10.62□□□□□ -0.712e-8■■■■□ 26.2
ABCF1-201ENST00000326195 ZNF622Q969S3 477 aaKnown RBP eCLIP12.37□□□□□ -0.432e-8■■■■□ 24.2
ABCF1-201ENST00000326195 AQRO60306 1485 aaKnown RBP eCLIP16.05■□□□□ 0.163e-7■■■■□ 24
ABCF1-201ENST00000326195 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP10.33□□□□□ -0.766e-9■■■■□ 22.9
ABCF1-201ENST00000326195 SF3A3Q12874 501 aaKnown RBP eCLIP11.24□□□□□ -0.611e-6■■■■□ 22.6
ABCF1-201ENST00000326195 ZNF800Q2TB10 664 aaPredicted RBP eCLIP9.81□□□□□ -0.841e-7■■■■□ 21.8
ABCF1-201ENST00000326195 RPS3P23396 243 aaKnown RBP eCLIP9.79□□□□□ -0.845e-6■■■■□ 21.2
ABCF1-201ENST00000326195 EFTUD2Q15029 972 aaKnown RBP eCLIP10.6□□□□□ -0.711e-6■■■■□ 21.2
ABCF1-201ENST00000326195 NPM1P06748 294 aaKnown RBP eCLIP15.27■□□□□ 0.042e-7■■■■□ 21.1
ABCF1-201ENST00000326195 RBFOX2O43251 390 aaKnown RBP eCLIP8.59□□□□□ -1.032e-8■■■■□ 20.3
ABCF1-201ENST00000326195 SUB1P53999 127 aaKnown RBP eCLIP8.27□□□□□ -1.099e-8■■■■□ 20.2
ABCF1-201ENST00000326195 MTPAPQ9NVV4 582 aaKnown RBP eCLIP10.29□□□□□ -0.766e-6■■■■□ 19.3
ABCF1-201ENST00000326195 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP8.7□□□□□ -1.023e-7■■■□□ 18.6
ABCF1-201ENST00000326195 DDX24Q9GZR7 859 aaKnown RBP eCLIP11.93□□□□□ -0.51e-6■■■□□ 18.3
ABCF1-201ENST00000326195 U2AF2P26368 475 aaKnown RBP eCLIP12.41□□□□□ -0.423e-7■■■□□ 18.3
ABCF1-201ENST00000326195 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.86□□□□□ -0.036e-8■■■□□ 17.8
ABCF1-201ENST00000326195 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP14.63□□□□□ -0.079e-7■■■□□ 17.5
ABCF1-201ENST00000326195 AARSP49588 968 aaKnown RBP eCLIP11.46□□□□□ -0.584e-6■■■□□ 17.5
ABCF1-201ENST00000326195 FXR2P51116 673 aaKnown RBP eCLIP11.03□□□□□ -0.641e-6■■■□□ 17.3
ABCF1-201ENST00000326195 LARP4Q71RC2 724 aaKnown RBP eCLIP10.01□□□□□ -0.814e-8■■■□□ 16.7
ABCF1-201ENST00000326195 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP10.37□□□□□ -0.754e-6■■■□□ 16.4
ABCF1-201ENST00000326195 G3BP1Q13283 466 aaKnown RBP eCLIP12.32□□□□□ -0.441e-6■■■□□ 16.3
ABCF1-201ENST00000326195 FTOQ9C0B1 505 aaKnown RBP eCLIP11.75□□□□□ -0.536e-7■■■□□ 15
ABCF1-201ENST00000326195 PUM2Q8TB72 1066 aaKnown RBP eCLIP9.69□□□□□ -0.862e-7■■■□□ 14.6
ABCF1-201ENST00000326195 SRSF1Q07955 248 aaKnown RBP eCLIP8.53□□□□□ -1.049e-12■■□□□ 14.2
ABCF1-201ENST00000326195 SF3B4Q15427 424 aaKnown RBP eCLIP10.39□□□□□ -0.753e-7■■□□□ 14
ABCF1-201ENST00000326195 METAP2P50579 478 aaKnown RBP eCLIP11.63□□□□□ -0.558e-6■■□□□ 13.7
ABCF1-201ENST00000326195 XRN2Q9H0D6 950 aaKnown RBP eCLIP10.97□□□□□ -0.651e-8■■□□□ 13
ABCF1-201ENST00000326195 ZC3H11AO75152 810 aaKnown RBP eCLIP10.75□□□□□ -0.699e-8■■□□□ 13
ABCF1-201ENST00000326195 FMR1Q06787 632 aaKnown RBP eCLIP11.83□□□□□ -0.521e-6■■□□□ 12.8
ABCF1-201ENST00000326195 DDX55Q8NHQ9 600 aaKnown RBP eCLIP11.46□□□□□ -0.572e-6■■□□□ 12.8
ABCF1-201ENST00000326195 PABPC4Q13310 644 aaKnown RBP eCLIP11.29□□□□□ -0.66e-9■■□□□ 12.5
ABCF1-201ENST00000326195 DDX6P26196 483 aaKnown RBP eCLIP10.08□□□□□ -0.83e-6■■□□□ 12.3
ABCF1-201ENST00000326195 BUD13Q9BRD0 619 aaKnown RBP eCLIP10.89□□□□□ -0.671e-9■■□□□ 11.6
ABCF1-201ENST00000326195 RBM5P52756 815 aaKnown RBP eCLIP12.08□□□□□ -0.486e-7■■□□□ 11.4
ABCF1-201ENST00000326195 PPIGQ13427 754 aaKnown RBP eCLIP10.6□□□□□ -0.713e-7■□□□□ 11.1
ABCF1-201ENST00000326195 PUM1Q14671 1186 aaKnown RBP eCLIP9.51□□□□□ -0.891e-11■□□□□ 10.8
ABCF1-201ENST00000326195 GPKOWQ92917 476 aaPredicted RBP eCLIP11.58□□□□□ -0.567e-16■□□□□ 10.7
ABCF1-201ENST00000326195 YBX3P16989 372 aaKnown RBP eCLIP11.98□□□□□ -0.492e-8■□□□□ 10.6
ABCF1-201ENST00000326195 TARDBPQ13148 414 aaKnown RBP eCLIP9.92□□□□□ -0.823e-6■□□□□ 10.6
ABCF1-201ENST00000326195 XRCC6P12956 609 aaKnown RBP eCLIP13.14□□□□□ -0.312e-6■□□□□ 9.4
ABCF1-201ENST00000326195 HLTFQ14527 1009 aaKnown RBP eCLIP11.07□□□□□ -0.645e-6■□□□□ 8.8
Retrieved 55 of 55 RNA–protein pairs in 14.5 ms