RNA–Protein interactions for RNA: ENST00000325327.3

LMNB2-201, Transcript of lamin B2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LMNB2, Length 4,671 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMNB2-201ENST00000325327 NISCHQ9Y2I1 1504 aa31.44■■■□□ 2.62
LMNB2-201ENST00000325327 DCAF8L2P0C7V8 631 aa31.4■■■□□ 2.62
LMNB2-201ENST00000325327 SHROOM4Q9ULL8 1493 aa29.29■■■□□ 2.28
LMNB2-201ENST00000325327 SUPT5HO00267 1087 aaKnown RBP29.12■■■□□ 2.25
LMNB2-201ENST00000325327 EHMT2Q96KQ7 1210 aa28.01■■■□□ 2.08
LMNB2-201ENST00000325327 ABCC9O60706 1549 aa27.66■■■□□ 2.02
LMNB2-201ENST00000325327 FAM9AQ8IZU1 332 aaPredicted RBP27.42■■□□□ 1.98
LMNB2-201ENST00000325327 PABPN1Q86U42 306 aaKnown RBP eCLIP27.24■■□□□ 1.95
LMNB2-201ENST00000325327 RANGAP1P46060 587 aaPredicted RBP27■■□□□ 1.91
LMNB2-201ENST00000325327 TRIM41Q8WV44 630 aa26.89■■□□□ 1.9
LMNB2-201ENST00000325327 TTBK1Q5TCY1 1321 aaPredicted RBP26.79■■□□□ 1.88
LMNB2-201ENST00000325327 APLP2Q06481 763 aa26.63■■□□□ 1.85
LMNB2-201ENST00000325327 ATP1B4Q9UN42 357 aaPredicted RBP26.51■■□□□ 1.83
LMNB2-201ENST00000325327 UBTFP17480 764 aaKnown RBP26.47■■□□□ 1.83
LMNB2-201ENST00000325327 PPARGC1BQ86YN6 1023 aaKnown RBP26.05■■□□□ 1.76
LMNB2-201ENST00000325327 SCRIBQ14160 1630 aa26■■□□□ 1.75
LMNB2-201ENST00000325327 CHIC1Q5VXU3 224 aa25.98■■□□□ 1.75
LMNB2-201ENST00000325327 PCGF6Q9BYE7 350 aa25.97■■□□□ 1.75
LMNB2-201ENST00000325327 ZCCHC6Q5VYS8 1495 aaKnown RBP25.97■■□□□ 1.75
LMNB2-201ENST00000325327 CCDC180Q9P1Z9 1646 aa25.96■■□□□ 1.75
LMNB2-201ENST00000325327 LOC105371045A0A1W2PR82 267 aa25.93■■□□□ 1.74
LMNB2-201ENST00000325327 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.81■■□□□ 1.72
LMNB2-201ENST00000325327 HNRNPUL2Q1KMD3 747 aaKnown RBP25.81■■□□□ 1.72
LMNB2-201ENST00000325327 FBLN2P98095 1184 aa25.67■■□□□ 1.7
LMNB2-201ENST00000325327 RB1CC1Q8TDY2 1594 aa25.54■■□□□ 1.68
LMNB2-201ENST00000325327 ITGAEP38570 1179 aa25.52■■□□□ 1.68
LMNB2-201ENST00000325327 MYT1LQ9UL68 1186 aa25.48■■□□□ 1.67
LMNB2-201ENST00000325327 CCER1Q8TC90 406 aaPredicted RBP25.4■■□□□ 1.66
LMNB2-201ENST00000325327 NACADO15069 1562 aa25.29■■□□□ 1.64
LMNB2-201ENST00000325327 P3H3Q8IVL6 736 aa25.21■■□□□ 1.63
LMNB2-201ENST00000325327 ARID3CA6NKF2 412 aa25.19■■□□□ 1.62
LMNB2-201ENST00000325327 CSRNP3Q8WYN3 585 aa25.05■■□□□ 1.6
LMNB2-201ENST00000325327 RSF1Q96T23 1441 aaPredicted RBP24.99■■□□□ 1.59
LMNB2-201ENST00000325327 CECR2Q9BXF3 1484 aa24.97■■□□□ 1.59
LMNB2-201ENST00000325327 TRIM26Q12899 539 aaPredicted RBP24.95■■□□□ 1.58
LMNB2-201ENST00000325327 FAM50AQ14320 339 aaKnown RBP24.92■■□□□ 1.58
LMNB2-201ENST00000325327 BAZ1BQ9UIG0 1483 aaKnown RBP24.82■■□□□ 1.56
LMNB2-201ENST00000325327 DCAF1Q9Y4B6 1507 aa24.76■■□□□ 1.55
LMNB2-201ENST00000325327 CHMP7Q8WUX9 453 aaPredicted RBP24.68■■□□□ 1.54
LMNB2-201ENST00000325327 ZEB1P37275 1124 aaPredicted RBP24.67■■□□□ 1.54
LMNB2-201ENST00000325327 POLR3GLQ9BT43 218 aa24.65■■□□□ 1.54
LMNB2-201ENST00000325327 ZNF777Q9ULD5 760 aaPredicted RBP24.61■■□□□ 1.53
LMNB2-201ENST00000325327 TRIM52Q96A61 297 aa24.6■■□□□ 1.53
LMNB2-201ENST00000325327 CNGB1Q14028 1251 aaPredicted RBP24.58■■□□□ 1.52
LMNB2-201ENST00000325327 BAZ1AQ9NRL2 1556 aaPredicted RBP24.57■■□□□ 1.52
LMNB2-201ENST00000325327 ERCC6Q03468 1493 aa24.53■■□□□ 1.52
LMNB2-201ENST00000325327 MROH2BQ7Z745 1585 aa24.5■■□□□ 1.51
LMNB2-201ENST00000325327 NPM1P06748 294 aaKnown RBP eCLIP24.45■■□□□ 1.5
LMNB2-201ENST00000325327 WRNQ14191 1432 aaPredicted RBP eCLIP24.4■■□□□ 1.5
LMNB2-201ENST00000325327 NEUROD1Q13562 356 aa24.39■■□□□ 1.49
LMNB2-201ENST00000325327 CDK11AQ9UQ88 783 aaPredicted RBP24.37■■□□□ 1.49
LMNB2-201ENST00000325327 PLPPR3Q6T4P5 718 aa24.32■■□□□ 1.48
LMNB2-201ENST00000325327 YTHDC1Q96MU7 727 aaKnown RBP24.31■■□□□ 1.48
LMNB2-201ENST00000325327 ZNF326Q5BKZ1 582 aaKnown RBP24.29■■□□□ 1.48
LMNB2-201ENST00000325327 SLC4A1APQ9BWU0 796 aaKnown RBP24.26■■□□□ 1.47
LMNB2-201ENST00000325327 KCNH8Q96L42 1107 aa24.23■■□□□ 1.47
LMNB2-201ENST00000325327 MYO15BQ96JP2 1530 aa24.22■■□□□ 1.47
LMNB2-201ENST00000325327 CCDC88BA6NC98 1476 aa24.19■■□□□ 1.46
LMNB2-201ENST00000325327 HRCP23327 699 aa24.16■■□□□ 1.46
LMNB2-201ENST00000325327 CHIC2Q9UKJ5 165 aa24.16■■□□□ 1.46
LMNB2-201ENST00000325327 KIF27Q86VH2 1401 aa24.11■■□□□ 1.45
LMNB2-201ENST00000325327 SMARCA2P51531 1590 aa24.1■■□□□ 1.45
LMNB2-201ENST00000325327 WIZO95785 1651 aa24.08■■□□□ 1.44
LMNB2-201ENST00000325327 ATAD2BQ9ULI0 1458 aa24.07■■□□□ 1.44
LMNB2-201ENST00000325327 TDRD9Q8NDG6 1382 aaKnown RBP24.07■■□□□ 1.44
LMNB2-201ENST00000325327 BCANQ96GW7 911 aa24.06■■□□□ 1.44
LMNB2-201ENST00000325327 CLIP1P30622 1438 aa24.05■■□□□ 1.44
LMNB2-201ENST00000325327 PDS5BQ9NTI5 1447 aa24.03■■□□□ 1.44
LMNB2-201ENST00000325327 ESF1Q9H501 851 aaKnown RBP24.02■■□□□ 1.44
LMNB2-201ENST00000325327 CUX2O14529 1486 aa24.02■■□□□ 1.44
LMNB2-201ENST00000325327 MTUS2Q5JR59 1369 aa24.01■■□□□ 1.43
LMNB2-201ENST00000325327 GRWD1Q9BQ67 446 aaKnown RBP eCLIP23.99■■□□□ 1.432e-8■■□□□ 14.1
LMNB2-201ENST00000325327 CADPSQ9ULU8 1353 aa23.99■■□□□ 1.43
LMNB2-201ENST00000325327 SOGA1O94964 1423 aa23.99■■□□□ 1.43
LMNB2-201ENST00000325327 CHGAP10645 457 aaKnown RBP23.96■■□□□ 1.43
LMNB2-201ENST00000325327 ABCC8Q09428 1581 aa23.95■■□□□ 1.43
LMNB2-201ENST00000325327 CENPBP07199 599 aaPredicted RBP23.95■■□□□ 1.42
LMNB2-201ENST00000325327 PLEKHD1A6NEE1 506 aa23.93■■□□□ 1.42
LMNB2-201ENST00000325327 CARMIL1Q5VZK9 1371 aa23.9■■□□□ 1.42
LMNB2-201ENST00000325327 TSPY4P0CV99 314 aa23.89■■□□□ 1.41
LMNB2-201ENST00000325327 TSPY10P0CW01 314 aa23.89■■□□□ 1.41
LMNB2-201ENST00000325327 PELP1Q8IZL8 1130 aaKnown RBP23.87■■□□□ 1.41
LMNB2-201ENST00000325327 EEA1Q15075 1411 aa23.86■■□□□ 1.41
LMNB2-201ENST00000325327 GOLGA3Q08378 1498 aa23.86■■□□□ 1.41
LMNB2-201ENST00000325327 SENP3Q9H4L4 574 aaPredicted RBP23.84■■□□□ 1.41
LMNB2-201ENST00000325327 SMARCA4P51532 1647 aa23.84■■□□□ 1.41
LMNB2-201ENST00000325327 CEP162Q5TB80 1403 aa23.83■■□□□ 1.41
LMNB2-201ENST00000325327 STAG3Q9UJ98 1225 aa23.81■■□□□ 1.4
LMNB2-201ENST00000325327 TRHP20396 242 aaPredicted RBP23.8■■□□□ 1.4
LMNB2-201ENST00000325327 TOP2AP11388 1531 aaKnown RBP23.79■■□□□ 1.4
LMNB2-201ENST00000325327 RRP7BPQ9NSQ0 103 aa23.78■■□□□ 1.4
LMNB2-201ENST00000325327 DNAJC5BQ9UF47 199 aa23.78■■□□□ 1.4
LMNB2-201ENST00000325327 EIF4G1Q04637 1599 aaKnown RBP23.76■■□□□ 1.39
LMNB2-201ENST00000325327 CEP164Q9UPV0 1460 aa23.73■■□□□ 1.39
LMNB2-201ENST00000325327 CFDP1Q9UEE9 299 aaPredicted RBP23.7■■□□□ 1.38
LMNB2-201ENST00000325327 TNIKQ9UKE5 1360 aa23.66■■□□□ 1.38
LMNB2-201ENST00000325327 FANCD2Q9BXW9 1451 aa23.65■■□□□ 1.38
LMNB2-201ENST00000325327 NEFLP07196 543 aa23.64■■□□□ 1.37
LMNB2-201ENST00000325327 ARID4BQ4LE39 1312 aaPredicted RBP23.62■■□□□ 1.37
LMNB2-201ENST00000325327 DIEXFQ68CQ4 756 aaKnown RBP23.62■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms