RNA–Protein interactions for RNA: ENST00000323929.7

MRE11-201, Transcript of MRE11 homolog, double strand break repair nuclease, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene MRE11, Length 6,897 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MRE11-201ENST00000323929 NISCHQ9Y2I1 1504 aa13.71□□□□□ -0.21
MRE11-201ENST00000323929 DCAF8L2P0C7V8 631 aa13.27□□□□□ -0.29
MRE11-201ENST00000323929 SUPT5HO00267 1087 aaKnown RBP12.52□□□□□ -0.41
MRE11-201ENST00000323929 SHROOM4Q9ULL8 1493 aa12.5□□□□□ -0.41
MRE11-201ENST00000323929 FAM9AQ8IZU1 332 aaPredicted RBP11.91□□□□□ -0.5
MRE11-201ENST00000323929 APLP2Q06481 763 aa11.91□□□□□ -0.5
MRE11-201ENST00000323929 EHMT2Q96KQ7 1210 aa11.85□□□□□ -0.51
MRE11-201ENST00000323929 TRIM41Q8WV44 630 aa11.76□□□□□ -0.53
MRE11-201ENST00000323929 ABCC9O60706 1549 aa11.66□□□□□ -0.54
MRE11-201ENST00000323929 CCDC180Q9P1Z9 1646 aa11.62□□□□□ -0.55
MRE11-201ENST00000323929 UBTFP17480 764 aaKnown RBP11.54□□□□□ -0.56
MRE11-201ENST00000323929 RANGAP1P46060 587 aaPredicted RBP11.49□□□□□ -0.57
MRE11-201ENST00000323929 ZEB1P37275 1124 aaPredicted RBP11.47□□□□□ -0.57
MRE11-201ENST00000323929 ATP1B4Q9UN42 357 aaPredicted RBP11.45□□□□□ -0.58
MRE11-201ENST00000323929 TTBK1Q5TCY1 1321 aaPredicted RBP11.45□□□□□ -0.58
MRE11-201ENST00000323929 PELP1Q8IZL8 1130 aaKnown RBP11.44□□□□□ -0.58
MRE11-201ENST00000323929 PCGF6Q9BYE7 350 aa11.42□□□□□ -0.58
MRE11-201ENST00000323929 ZCCHC6Q5VYS8 1495 aaKnown RBP11.41□□□□□ -0.58
MRE11-201ENST00000323929 PABPN1Q86U42 306 aaKnown RBP eCLIP11.36□□□□□ -0.59
MRE11-201ENST00000323929 CCER1Q8TC90 406 aaPredicted RBP11.32□□□□□ -0.6
MRE11-201ENST00000323929 SCRIBQ14160 1630 aa11.29□□□□□ -0.6
MRE11-201ENST00000323929 CHIC1Q5VXU3 224 aa11.29□□□□□ -0.6
MRE11-201ENST00000323929 RB1CC1Q8TDY2 1594 aa11.24□□□□□ -0.61
MRE11-201ENST00000323929 TRIM26Q12899 539 aaPredicted RBP11.22□□□□□ -0.61
MRE11-201ENST00000323929 NACADO15069 1562 aa11.15□□□□□ -0.62
MRE11-201ENST00000323929 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.15□□□□□ -0.62
MRE11-201ENST00000323929 HNRNPUL2Q1KMD3 747 aaKnown RBP11.15□□□□□ -0.62
MRE11-201ENST00000323929 CENPBP07199 599 aaPredicted RBP11.14□□□□□ -0.63
MRE11-201ENST00000323929 LOC105371045A0A1W2PR82 267 aa11.08□□□□□ -0.64
MRE11-201ENST00000323929 PPARGC1BQ86YN6 1023 aaKnown RBP11.07□□□□□ -0.64
MRE11-201ENST00000323929 MYT1LQ9UL68 1186 aa11.05□□□□□ -0.64
MRE11-201ENST00000323929 DCAF1Q9Y4B6 1507 aa11.04□□□□□ -0.64
MRE11-201ENST00000323929 ITGAEP38570 1179 aa11□□□□□ -0.65
MRE11-201ENST00000323929 NEFLP07196 543 aa10.92□□□□□ -0.66
MRE11-201ENST00000323929 HRCP23327 699 aa10.91□□□□□ -0.66
MRE11-201ENST00000323929 CSRNP3Q8WYN3 585 aa10.9□□□□□ -0.66
MRE11-201ENST00000323929 FAM50AQ14320 339 aaKnown RBP10.9□□□□□ -0.66
MRE11-201ENST00000323929 FBLN2P98095 1184 aa10.87□□□□□ -0.67
MRE11-201ENST00000323929 BAZ1BQ9UIG0 1483 aaKnown RBP10.83□□□□□ -0.68
MRE11-201ENST00000323929 BAZ1AQ9NRL2 1556 aaPredicted RBP10.82□□□□□ -0.68
MRE11-201ENST00000323929 RSF1Q96T23 1441 aaPredicted RBP10.82□□□□□ -0.68
MRE11-201ENST00000323929 ERICH6Q7L0X2 663 aa10.82□□□□□ -0.68
MRE11-201ENST00000323929 TRIM52Q96A61 297 aa10.81□□□□□ -0.68
MRE11-201ENST00000323929 YTHDC1Q96MU7 727 aaKnown RBP10.81□□□□□ -0.68
MRE11-201ENST00000323929 POLR3GLQ9BT43 218 aa10.78□□□□□ -0.68
MRE11-201ENST00000323929 CDK11AQ9UQ88 783 aaPredicted RBP10.78□□□□□ -0.68
MRE11-201ENST00000323929 MYO15BQ96JP2 1530 aa10.77□□□□□ -0.69
MRE11-201ENST00000323929 EEA1Q15075 1411 aa10.75□□□□□ -0.69
MRE11-201ENST00000323929 P3H3Q8IVL6 736 aa10.71□□□□□ -0.69
MRE11-201ENST00000323929 WRNQ14191 1432 aaPredicted RBP eCLIP10.67□□□□□ -0.7
MRE11-201ENST00000323929 GOLGA3Q08378 1498 aa10.67□□□□□ -0.7
MRE11-201ENST00000323929 SMARCA2P51531 1590 aa10.66□□□□□ -0.7
MRE11-201ENST00000323929 NEUROD1Q13562 356 aa10.66□□□□□ -0.7
MRE11-201ENST00000323929 SLC4A1APQ9BWU0 796 aaKnown RBP10.64□□□□□ -0.71
MRE11-201ENST00000323929 DIEXFQ68CQ4 756 aaKnown RBP10.62□□□□□ -0.71
MRE11-201ENST00000323929 NPM1P06748 294 aaKnown RBP eCLIP10.61□□□□□ -0.71
MRE11-201ENST00000323929 KIF27Q86VH2 1401 aa10.61□□□□□ -0.71
MRE11-201ENST00000323929 CHMP7Q8WUX9 453 aaPredicted RBP10.6□□□□□ -0.71
MRE11-201ENST00000323929 ZNF777Q9ULD5 760 aaPredicted RBP10.6□□□□□ -0.71
MRE11-201ENST00000323929 ARID3CA6NKF2 412 aa10.6□□□□□ -0.71
MRE11-201ENST00000323929 CLIP1P30622 1438 aa10.59□□□□□ -0.71
MRE11-201ENST00000323929 CECR2Q9BXF3 1484 aa10.59□□□□□ -0.71
MRE11-201ENST00000323929 ERCC6Q03468 1493 aa10.59□□□□□ -0.71
MRE11-201ENST00000323929 CEP164Q9UPV0 1460 aa10.58□□□□□ -0.72
MRE11-201ENST00000323929 TOP2AP11388 1531 aaKnown RBP10.55□□□□□ -0.72
MRE11-201ENST00000323929 ZNF326Q5BKZ1 582 aaKnown RBP10.55□□□□□ -0.72
MRE11-201ENST00000323929 ANP32CO43423 234 aa10.55□□□□□ -0.72
MRE11-201ENST00000323929 MROH2BQ7Z745 1585 aa10.54□□□□□ -0.72
MRE11-201ENST00000323929 MTUS2Q5JR59 1369 aa10.53□□□□□ -0.72
MRE11-201ENST00000323929 ACIN1Q9UKV3 1341 aaKnown RBP10.53□□□□□ -0.72
MRE11-201ENST00000323929 ZNF316A6NFI3 1004 aaPredicted RBP10.52□□□□□ -0.73
MRE11-201ENST00000323929 CNGB1Q14028 1251 aaPredicted RBP10.52□□□□□ -0.73
MRE11-201ENST00000323929 CEP162Q5TB80 1403 aa10.52□□□□□ -0.73
MRE11-201ENST00000323929 TNIKQ9UKE5 1360 aa10.51□□□□□ -0.73
MRE11-201ENST00000323929 DAXXQ9UER7 740 aaPredicted RBP10.51□□□□□ -0.73
MRE11-201ENST00000323929 ESF1Q9H501 851 aaKnown RBP10.51□□□□□ -0.73
MRE11-201ENST00000323929 CCDC88BA6NC98 1476 aa10.5□□□□□ -0.73
MRE11-201ENST00000323929 TONSLQ96HA7 1378 aa10.48□□□□□ -0.73
MRE11-201ENST00000323929 PDS5BQ9NTI5 1447 aa10.47□□□□□ -0.73
MRE11-201ENST00000323929 BCANQ96GW7 911 aa10.46□□□□□ -0.73
MRE11-201ENST00000323929 SMARCA4P51532 1647 aa10.46□□□□□ -0.74
MRE11-201ENST00000323929 TSPY4P0CV99 314 aa10.44□□□□□ -0.74
MRE11-201ENST00000323929 TSPY10P0CW01 314 aa10.44□□□□□ -0.74
MRE11-201ENST00000323929 WIZO95785 1651 aa10.44□□□□□ -0.74
MRE11-201ENST00000323929 CUX2O14529 1486 aa10.42□□□□□ -0.74
MRE11-201ENST00000323929 PLEKHD1A6NEE1 506 aa10.41□□□□□ -0.74
MRE11-201ENST00000323929 NEFMP07197 916 aa10.41□□□□□ -0.74
MRE11-201ENST00000323929 FHAD1B1AJZ9 1412 aa10.41□□□□□ -0.74
MRE11-201ENST00000323929 STAG3Q9UJ98 1225 aa10.4□□□□□ -0.74
MRE11-201ENST00000323929 EIF4G1Q04637 1599 aaKnown RBP10.39□□□□□ -0.75
MRE11-201ENST00000323929 CARMIL1Q5VZK9 1371 aa10.39□□□□□ -0.75
MRE11-201ENST00000323929 MYT1Q01538 1121 aa10.38□□□□□ -0.75
MRE11-201ENST00000323929 ATAD2BQ9ULI0 1458 aa10.38□□□□□ -0.75
MRE11-201ENST00000323929 CHIC2Q9UKJ5 165 aa10.37□□□□□ -0.75
MRE11-201ENST00000323929 CHGAP10645 457 aaKnown RBP10.35□□□□□ -0.75
MRE11-201ENST00000323929 ABCC8Q09428 1581 aa10.35□□□□□ -0.75
MRE11-201ENST00000323929 CLSPNQ9HAW4 1339 aa10.34□□□□□ -0.75
MRE11-201ENST00000323929 GRWD1Q9BQ67 446 aaKnown RBP eCLIP10.34□□□□□ -0.754e-7■■■■□ 22.8
MRE11-201ENST00000323929 CADPSQ9ULU8 1353 aa10.34□□□□□ -0.75
MRE11-201ENST00000323929 SOGA1O94964 1423 aa10.33□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 8.8 ms