RNA–Protein interactions for RNA: ENST00000323347.14

SMARCD2-202, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2, humanhuman

TSL 2 BASIC

Gene SMARCD2, Length 1,935 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD2-202ENST00000323347 NISCHQ9Y2I1 1504 aa33.81■■■■□ 3
SMARCD2-202ENST00000323347 CCDC180Q9P1Z9 1646 aa29.03■■■□□ 2.24
SMARCD2-202ENST00000323347 ZCCHC6Q5VYS8 1495 aaKnown RBP28.58■■■□□ 2.17
SMARCD2-202ENST00000323347 SHROOM4Q9ULL8 1493 aa28.11■■■□□ 2.09
SMARCD2-202ENST00000323347 DCAF1Q9Y4B6 1507 aa27.99■■■□□ 2.07
SMARCD2-202ENST00000323347 DCAF8L2P0C7V8 631 aa27.55■■■□□ 2
SMARCD2-202ENST00000323347 ABCC9O60706 1549 aa27.52■■■□□ 2
SMARCD2-202ENST00000323347 SUPT5HO00267 1087 aaKnown RBP27.47■■□□□ 1.99
SMARCD2-202ENST00000323347 MYO15BQ96JP2 1530 aa27.34■■□□□ 1.97
SMARCD2-202ENST00000323347 NACADO15069 1562 aa26.86■■□□□ 1.89
SMARCD2-202ENST00000323347 CHIC1Q5VXU3 224 aa26.84■■□□□ 1.89
SMARCD2-202ENST00000323347 SCRIBQ14160 1630 aa26.79■■□□□ 1.88
SMARCD2-202ENST00000323347 RSF1Q96T23 1441 aaPredicted RBP26.58■■□□□ 1.85
SMARCD2-202ENST00000323347 DNAJC5BQ9UF47 199 aa26.47■■□□□ 1.83
SMARCD2-202ENST00000323347 RB1CC1Q8TDY2 1594 aa26.4■■□□□ 1.82
SMARCD2-202ENST00000323347 CECR2Q9BXF3 1484 aa26.22■■□□□ 1.79
SMARCD2-202ENST00000323347 MROH2BQ7Z745 1585 aa26.16■■□□□ 1.78
SMARCD2-202ENST00000323347 BAZ1AQ9NRL2 1556 aaPredicted RBP26■■□□□ 1.75
SMARCD2-202ENST00000323347 WIZO95785 1651 aa25.96■■□□□ 1.75
SMARCD2-202ENST00000323347 UNC13AQ9UPW8 1703 aa25.91■■□□□ 1.74
SMARCD2-202ENST00000323347 LOC105371045A0A1W2PR82 267 aa25.82■■□□□ 1.72
SMARCD2-202ENST00000323347 TRIM41Q8WV44 630 aa25.79■■□□□ 1.72
SMARCD2-202ENST00000323347 SMARCA4P51532 1647 aa25.78■■□□□ 1.72
SMARCD2-202ENST00000323347 TOP2AP11388 1531 aaKnown RBP25.72■■□□□ 1.71
SMARCD2-202ENST00000323347 EIF4G1Q04637 1599 aaKnown RBP25.7■■□□□ 1.7
SMARCD2-202ENST00000323347 BICRAQ9NZM4 1560 aa25.67■■□□□ 1.7
SMARCD2-202ENST00000323347 HRCP23327 699 aa25.53■■□□□ 1.68
SMARCD2-202ENST00000323347 SMARCA2P51531 1590 aa25.52■■□□□ 1.68
SMARCD2-202ENST00000323347 PCGF6Q9BYE7 350 aa25.51■■□□□ 1.67
SMARCD2-202ENST00000323347 CCDC88BA6NC98 1476 aa25.5■■□□□ 1.67
SMARCD2-202ENST00000323347 PABPN1Q86U42 306 aaKnown RBP eCLIP25.49■■□□□ 1.675e-8■■■□□ 16.1
SMARCD2-202ENST00000323347 PEG3Q9GZU2 1588 aa25.48■■□□□ 1.67
SMARCD2-202ENST00000323347 TRIM26Q12899 539 aaPredicted RBP25.33■■□□□ 1.65
SMARCD2-202ENST00000323347 FAM9AQ8IZU1 332 aaPredicted RBP25.31■■□□□ 1.64
SMARCD2-202ENST00000323347 ABCC8Q09428 1581 aa25.2■■□□□ 1.62
SMARCD2-202ENST00000323347 ATAD2BQ9ULI0 1458 aa25.18■■□□□ 1.62
SMARCD2-202ENST00000323347 EEA1Q15075 1411 aa25.06■■□□□ 1.6
SMARCD2-202ENST00000323347 BAZ1BQ9UIG0 1483 aaKnown RBP25.04■■□□□ 1.6
SMARCD2-202ENST00000323347 WRNQ14191 1432 aaPredicted RBP eCLIP24.95■■□□□ 1.58
SMARCD2-202ENST00000323347 SOGA1O94964 1423 aa24.94■■□□□ 1.58
SMARCD2-202ENST00000323347 DNAJC5Q9H3Z4 198 aa24.93■■□□□ 1.58
SMARCD2-202ENST00000323347 EHMT2Q96KQ7 1210 aa24.87■■□□□ 1.57
SMARCD2-202ENST00000323347 TNIKQ9UKE5 1360 aa24.87■■□□□ 1.57
SMARCD2-202ENST00000323347 CSRNP3Q8WYN3 585 aa24.85■■□□□ 1.57
SMARCD2-202ENST00000323347 NCAPD3P42695 1498 aa24.84■■□□□ 1.57
SMARCD2-202ENST00000323347 HMGXB3Q12766 1538 aa24.84■■□□□ 1.57
SMARCD2-202ENST00000323347 CC2D2AQ9P2K1 1620 aa24.82■■□□□ 1.56
SMARCD2-202ENST00000323347 SYNJ1O43426 1573 aa24.81■■□□□ 1.56
SMARCD2-202ENST00000323347 RUSC2Q8N2Y8 1516 aa24.8■■□□□ 1.56
SMARCD2-202ENST00000323347 ZEB1P37275 1124 aaPredicted RBP24.76■■□□□ 1.55
SMARCD2-202ENST00000323347 PPARGC1BQ86YN6 1023 aaKnown RBP24.76■■□□□ 1.55
SMARCD2-202ENST00000323347 CEP162Q5TB80 1403 aa24.75■■□□□ 1.55
SMARCD2-202ENST00000323347 GOLGA3Q08378 1498 aa24.73■■□□□ 1.55
SMARCD2-202ENST00000323347 KIF21BO75037 1637 aa24.68■■□□□ 1.54
SMARCD2-202ENST00000323347 TOP2BQ02880 1626 aa24.65■■□□□ 1.54
SMARCD2-202ENST00000323347 CEP164Q9UPV0 1460 aa24.65■■□□□ 1.54
SMARCD2-202ENST00000323347 BIVM-ERCC5R4GMW8 1640 aa24.61■■□□□ 1.53
SMARCD2-202ENST00000323347 UBTFP17480 764 aaKnown RBP24.53■■□□□ 1.52
SMARCD2-202ENST00000323347 CFTRP13569 1480 aa24.52■■□□□ 1.52
SMARCD2-202ENST00000323347 CUX1P39880 1505 aa24.39■■□□□ 1.5
SMARCD2-202ENST00000323347 RAPGEF2Q9Y4G8 1499 aa24.38■■□□□ 1.49
SMARCD2-202ENST00000323347 ERICH3Q5RHP9 1530 aa24.37■■□□□ 1.49
SMARCD2-202ENST00000323347 CLIP1P30622 1438 aa24.36■■□□□ 1.49
SMARCD2-202ENST00000323347 PRDM2Q13029 1718 aa24.35■■□□□ 1.49
SMARCD2-202ENST00000323347 PRXQ9BXM0 1461 aa24.34■■□□□ 1.49
SMARCD2-202ENST00000323347 VPS8Q8N3P4 1428 aa24.29■■□□□ 1.48
SMARCD2-202ENST00000323347 CADPSQ9ULU8 1353 aa24.24■■□□□ 1.47
SMARCD2-202ENST00000323347 KIF27Q86VH2 1401 aa24.24■■□□□ 1.47
SMARCD2-202ENST00000323347 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.14■■□□□ 1.46
SMARCD2-202ENST00000323347 CCER1Q8TC90 406 aaPredicted RBP24.12■■□□□ 1.45
SMARCD2-202ENST00000323347 CUX2O14529 1486 aa24.08■■□□□ 1.45
SMARCD2-202ENST00000323347 ARAP1Q96P48 1450 aa24.05■■□□□ 1.44
SMARCD2-202ENST00000323347 TTBK1Q5TCY1 1321 aaPredicted RBP24.04■■□□□ 1.44
SMARCD2-202ENST00000323347 IGF1RP08069 1367 aa23.99■■□□□ 1.43
SMARCD2-202ENST00000323347 APLP2Q06481 763 aa23.98■■□□□ 1.43
SMARCD2-202ENST00000323347 FGD5Q6ZNL6 1462 aa23.97■■□□□ 1.43
SMARCD2-202ENST00000323347 FANCD2Q9BXW9 1451 aa23.95■■□□□ 1.42
SMARCD2-202ENST00000323347 ARHGAP35Q9NRY4 1499 aa23.89■■□□□ 1.42
SMARCD2-202ENST00000323347 DNMBPQ6XZF7 1577 aa23.89■■□□□ 1.41
SMARCD2-202ENST00000323347 CARMIL1Q5VZK9 1371 aa23.85■■□□□ 1.41
SMARCD2-202ENST00000323347 ERCC6Q03468 1493 aa23.84■■□□□ 1.41
SMARCD2-202ENST00000323347 RANGAP1P46060 587 aaPredicted RBP23.82■■□□□ 1.4
SMARCD2-202ENST00000323347 ABCA10Q8WWZ4 1543 aa23.81■■□□□ 1.4
SMARCD2-202ENST00000323347 LAMC3Q9Y6N6 1575 aa23.8■■□□□ 1.4
SMARCD2-202ENST00000323347 TOPBP1Q92547 1522 aa23.8■■□□□ 1.4
SMARCD2-202ENST00000323347 MAP3K1Q13233 1512 aa23.77■■□□□ 1.4
SMARCD2-202ENST00000323347 POLA1P09884 1462 aaPredicted RBP23.75■■□□□ 1.39
SMARCD2-202ENST00000323347 RRBP1Q9P2E9 1410 aaKnown RBP23.75■■□□□ 1.39
SMARCD2-202ENST00000323347 HNRNPUL2Q1KMD3 747 aaKnown RBP23.74■■□□□ 1.39
SMARCD2-202ENST00000323347 KANK4Q5T7N3 995 aaPredicted RBP23.73■■□□□ 1.39
SMARCD2-202ENST00000323347 NESP48681 1621 aa23.73■■□□□ 1.39
SMARCD2-202ENST00000323347 PELP1Q8IZL8 1130 aaKnown RBP23.72■■□□□ 1.39
SMARCD2-202ENST00000323347 RAD54L2Q9Y4B4 1467 aa23.67■■□□□ 1.38
SMARCD2-202ENST00000323347 CUL7Q14999 1698 aa23.66■■□□□ 1.38
SMARCD2-202ENST00000323347 CLSPNQ9HAW4 1339 aa23.63■■□□□ 1.37
SMARCD2-202ENST00000323347 WDR97A6NE52 1622 aa23.63■■□□□ 1.37
SMARCD2-202ENST00000323347 URB2Q14146 1524 aaKnown RBP23.62■■□□□ 1.37
SMARCD2-202ENST00000323347 TIAM1Q13009 1591 aa23.61■■□□□ 1.37
SMARCD2-202ENST00000323347 FHAD1B1AJZ9 1412 aa23.59■■□□□ 1.37
SMARCD2-202ENST00000323347 PDS5BQ9NTI5 1447 aa23.59■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms