RNA–Protein interactions for RNA: ENST00000313863.10

MKS1-201, Transcript of Meckel syndrome, type 1, humanhuman

TSL 5 BASIC

Gene MKS1, Length 2,091 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1-201ENST00000313863 NISCHQ9Y2I1 1504 aa28.05■■■□□ 2.08
MKS1-201ENST00000313863 CCDC180Q9P1Z9 1646 aa23.92■■□□□ 1.42
MKS1-201ENST00000313863 SHROOM4Q9ULL8 1493 aa23.8■■□□□ 1.4
MKS1-201ENST00000313863 ZCCHC6Q5VYS8 1495 aaKnown RBP23.79■■□□□ 1.4
MKS1-201ENST00000313863 SUPT5HO00267 1087 aaKnown RBP23.51■■□□□ 1.35
MKS1-201ENST00000313863 DCAF1Q9Y4B6 1507 aa23.19■■□□□ 1.3
MKS1-201ENST00000313863 CHIC1Q5VXU3 224 aa23.07■■□□□ 1.28
MKS1-201ENST00000313863 MYO15BQ96JP2 1530 aa22.98■■□□□ 1.27
MKS1-201ENST00000313863 DCAF8L2P0C7V8 631 aa22.89■■□□□ 1.25
MKS1-201ENST00000313863 HRCP23327 699 aa22.88■■□□□ 1.25
MKS1-201ENST00000313863 PCGF6Q9BYE7 350 aa22.58■■□□□ 1.2
MKS1-201ENST00000313863 ABCC9O60706 1549 aa22.51■■□□□ 1.19
MKS1-201ENST00000313863 LOC105371045A0A1W2PR82 267 aa22.27■■□□□ 1.16
MKS1-201ENST00000313863 TRIM26Q12899 539 aaPredicted RBP22.25■■□□□ 1.15
MKS1-201ENST00000313863 RSF1Q96T23 1441 aaPredicted RBP22.2■■□□□ 1.14
MKS1-201ENST00000313863 SCRIBQ14160 1630 aa22.19■■□□□ 1.14
MKS1-201ENST00000313863 PPARGC1BQ86YN6 1023 aaKnown RBP22.13■■□□□ 1.13
MKS1-201ENST00000313863 RB1CC1Q8TDY2 1594 aa22.13■■□□□ 1.13
MKS1-201ENST00000313863 ZEB1P37275 1124 aaPredicted RBP22.03■■□□□ 1.12
MKS1-201ENST00000313863 NACADO15069 1562 aa22.03■■□□□ 1.12
MKS1-201ENST00000313863 TRIM41Q8WV44 630 aa22■■□□□ 1.11
MKS1-201ENST00000313863 MROH2BQ7Z745 1585 aa21.73■■□□□ 1.07
MKS1-201ENST00000313863 CECR2Q9BXF3 1484 aa21.72■■□□□ 1.07
MKS1-201ENST00000313863 FAM9AQ8IZU1 332 aaPredicted RBP21.66■■□□□ 1.06
MKS1-201ENST00000313863 BAZ1AQ9NRL2 1556 aaPredicted RBP21.64■■□□□ 1.06
MKS1-201ENST00000313863 WIZO95785 1651 aa21.63■■□□□ 1.05
MKS1-201ENST00000313863 PELP1Q8IZL8 1130 aaKnown RBP21.57■■□□□ 1.04
MKS1-201ENST00000313863 EIF4G1Q04637 1599 aaKnown RBP21.52■■□□□ 1.04
MKS1-201ENST00000313863 TOP2AP11388 1531 aaKnown RBP21.4■■□□□ 1.02
MKS1-201ENST00000313863 EHMT2Q96KQ7 1210 aa21.35■■□□□ 1.01
MKS1-201ENST00000313863 SMARCA4P51532 1647 aa21.33■■□□□ 1.01
MKS1-201ENST00000313863 WRNQ14191 1432 aaPredicted RBP eCLIP21.29■■□□□ 1
MKS1-201ENST00000313863 SMARCA2P51531 1590 aa21.24■□□□□ 0.99
MKS1-201ENST00000313863 UNC13AQ9UPW8 1703 aa21.23■□□□□ 0.99
MKS1-201ENST00000313863 EEA1Q15075 1411 aa21.23■□□□□ 0.99
MKS1-201ENST00000313863 CCDC88BA6NC98 1476 aa21.21■□□□□ 0.99
MKS1-201ENST00000313863 CCER1Q8TC90 406 aaPredicted RBP21.21■□□□□ 0.99
MKS1-201ENST00000313863 ABCC8Q09428 1581 aa21.18■□□□□ 0.98
MKS1-201ENST00000313863 TNIKQ9UKE5 1360 aa21.15■□□□□ 0.98
MKS1-201ENST00000313863 SCAF1Q9H7N4 1312 aaKnown RBP21.15■□□□□ 0.98
MKS1-201ENST00000313863 CEP162Q5TB80 1403 aa21.14■□□□□ 0.97
MKS1-201ENST00000313863 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.13■□□□□ 0.97
MKS1-201ENST00000313863 PEG3Q9GZU2 1588 aa21.03■□□□□ 0.96
MKS1-201ENST00000313863 SOGA1O94964 1423 aa21.01■□□□□ 0.95
MKS1-201ENST00000313863 CSRNP3Q8WYN3 585 aa21■□□□□ 0.95
MKS1-201ENST00000313863 GOLGA3Q08378 1498 aa21■□□□□ 0.95
MKS1-201ENST00000313863 ACIN1Q9UKV3 1341 aaKnown RBP20.98■□□□□ 0.95
MKS1-201ENST00000313863 CENPBP07199 599 aaPredicted RBP20.95■□□□□ 0.94
MKS1-201ENST00000313863 DIEXFQ68CQ4 756 aaKnown RBP20.95■□□□□ 0.94
MKS1-201ENST00000313863 BICRAQ9NZM4 1560 aa20.93■□□□□ 0.94
MKS1-201ENST00000313863 UBTFP17480 764 aaKnown RBP20.9■□□□□ 0.94
MKS1-201ENST00000313863 KIF21BO75037 1637 aa20.89■□□□□ 0.93
MKS1-201ENST00000313863 CEP164Q9UPV0 1460 aa20.87■□□□□ 0.93
MKS1-201ENST00000313863 RUSC2Q8N2Y8 1516 aa20.85■□□□□ 0.93
MKS1-201ENST00000313863 NEUROD1Q13562 356 aa20.81■□□□□ 0.92
MKS1-201ENST00000313863 TTBK1Q5TCY1 1321 aaPredicted RBP20.78■□□□□ 0.92
MKS1-201ENST00000313863 ZNF316A6NFI3 1004 aaPredicted RBP20.77■□□□□ 0.92
MKS1-201ENST00000313863 BAZ1BQ9UIG0 1483 aaKnown RBP20.77■□□□□ 0.92
MKS1-201ENST00000313863 MYT1Q01538 1121 aa20.77■□□□□ 0.92
MKS1-201ENST00000313863 SYNJ1O43426 1573 aa20.75■□□□□ 0.91
MKS1-201ENST00000313863 CLIP1P30622 1438 aa20.71■□□□□ 0.91
MKS1-201ENST00000313863 ATAD2BQ9ULI0 1458 aa20.71■□□□□ 0.91
MKS1-201ENST00000313863 VPS8Q8N3P4 1428 aa20.69■□□□□ 0.9
MKS1-201ENST00000313863 PABPN1Q86U42 306 aaKnown RBP eCLIP20.67■□□□□ 0.9
MKS1-201ENST00000313863 GTF3C3Q9Y5Q9 886 aa20.67■□□□□ 0.9
MKS1-201ENST00000313863 APLP2Q06481 763 aa20.62■□□□□ 0.89
MKS1-201ENST00000313863 TOP2BQ02880 1626 aa20.57■□□□□ 0.88
MKS1-201ENST00000313863 RAPGEF2Q9Y4G8 1499 aa20.53■□□□□ 0.88
MKS1-201ENST00000313863 BIVM-ERCC5R4GMW8 1640 aa20.53■□□□□ 0.88
MKS1-201ENST00000313863 HNRNPUL2Q1KMD3 747 aaKnown RBP20.52■□□□□ 0.88
MKS1-201ENST00000313863 ERICH3Q5RHP9 1530 aa20.51■□□□□ 0.87
MKS1-201ENST00000313863 CLSPNQ9HAW4 1339 aa20.49■□□□□ 0.87
MKS1-201ENST00000313863 HMGXB3Q12766 1538 aa20.4■□□□□ 0.86
MKS1-201ENST00000313863 MIER1Q8N108 512 aa20.38■□□□□ 0.85
MKS1-201ENST00000313863 PRXQ9BXM0 1461 aa20.38■□□□□ 0.85
MKS1-201ENST00000313863 YTHDC1Q96MU7 727 aaKnown RBP20.34■□□□□ 0.85
MKS1-201ENST00000313863 NCAPD3P42695 1498 aa20.34■□□□□ 0.85
MKS1-201ENST00000313863 ARAP1Q96P48 1450 aa20.32■□□□□ 0.84
MKS1-201ENST00000313863 DHX57Q6P158 1386 aaKnown RBP20.27■□□□□ 0.84
MKS1-201ENST00000313863 KIF27Q86VH2 1401 aa20.26■□□□□ 0.83
MKS1-201ENST00000313863 RRBP1Q9P2E9 1410 aaKnown RBP20.25■□□□□ 0.83
MKS1-201ENST00000313863 CUX1P39880 1505 aa20.24■□□□□ 0.83
MKS1-201ENST00000313863 RANGAP1P46060 587 aaPredicted RBP20.23■□□□□ 0.83
MKS1-201ENST00000313863 CUX2O14529 1486 aa20.23■□□□□ 0.83
MKS1-201ENST00000313863 CFTRP13569 1480 aa20.2■□□□□ 0.82
MKS1-201ENST00000313863 PRDM2Q13029 1718 aa20.19■□□□□ 0.82
MKS1-201ENST00000313863 CCNB3Q8WWL7 1395 aa20.12■□□□□ 0.81
MKS1-201ENST00000313863 KANK4Q5T7N3 995 aaPredicted RBP20.12■□□□□ 0.81
MKS1-201ENST00000313863 MAP3K1Q13233 1512 aa20.11■□□□□ 0.81
MKS1-201ENST00000313863 ARHGAP35Q9NRY4 1499 aa20.1■□□□□ 0.81
MKS1-201ENST00000313863 TIAM1Q13009 1591 aa20.02■□□□□ 0.79
MKS1-201ENST00000313863 IGF1RP08069 1367 aa19.95■□□□□ 0.78
MKS1-201ENST00000313863 RAB3GAP2Q9H2M9 1393 aa19.92■□□□□ 0.78
MKS1-201ENST00000313863 CFAP43Q8NDM7 1665 aa19.92■□□□□ 0.78
MKS1-201ENST00000313863 FHAD1B1AJZ9 1412 aa19.91■□□□□ 0.78
MKS1-201ENST00000313863 CADPSQ9ULU8 1353 aa19.9■□□□□ 0.78
MKS1-201ENST00000313863 SETD5Q9C0A6 1442 aa19.9■□□□□ 0.78
MKS1-201ENST00000313863 MAPKBP1O60336 1514 aa19.9■□□□□ 0.78
MKS1-201ENST00000313863 LRRC9Q6ZRR7 1453 aa19.9■□□□□ 0.78
MKS1-201ENST00000313863 SUPT16HQ9Y5B9 1047 aaKnown RBP19.88■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms