RNA–Protein interactions for RNA: ENST00000304338.7

PPP4R4-201, Transcript of protein phosphatase 4 regulatory subunit 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PPP4R4, Length 3,868 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R4-201ENST00000304338 NISCHQ9Y2I1 1504 aa31.3■■■□□ 2.6
PPP4R4-201ENST00000304338 DCAF8L2P0C7V8 631 aa27.54■■■□□ 2
PPP4R4-201ENST00000304338 SHROOM4Q9ULL8 1493 aa27.26■■□□□ 1.95
PPP4R4-201ENST00000304338 SUPT5HO00267 1087 aaKnown RBP26.68■■□□□ 1.86
PPP4R4-201ENST00000304338 CCDC180Q9P1Z9 1646 aa26.43■■□□□ 1.82
PPP4R4-201ENST00000304338 ZCCHC6Q5VYS8 1495 aaKnown RBP26.24■■□□□ 1.79
PPP4R4-201ENST00000304338 ABCC9O60706 1549 aa25.84■■□□□ 1.73
PPP4R4-201ENST00000304338 DCAF1Q9Y4B6 1507 aa25.33■■□□□ 1.65
PPP4R4-201ENST00000304338 SCRIBQ14160 1630 aa25.28■■□□□ 1.64
PPP4R4-201ENST00000304338 CHIC1Q5VXU3 224 aa25.17■■□□□ 1.62
PPP4R4-201ENST00000304338 PABPN1Q86U42 306 aaKnown RBP eCLIP24.92■■□□□ 1.58
PPP4R4-201ENST00000304338 EHMT2Q96KQ7 1210 aa24.89■■□□□ 1.57
PPP4R4-201ENST00000304338 NACADO15069 1562 aa24.87■■□□□ 1.57
PPP4R4-201ENST00000304338 FAM9AQ8IZU1 332 aaPredicted RBP24.82■■□□□ 1.56
PPP4R4-201ENST00000304338 TRIM41Q8WV44 630 aa24.74■■□□□ 1.55
PPP4R4-201ENST00000304338 MYO15BQ96JP2 1530 aa24.73■■□□□ 1.55
PPP4R4-201ENST00000304338 RSF1Q96T23 1441 aaPredicted RBP24.73■■□□□ 1.55
PPP4R4-201ENST00000304338 RB1CC1Q8TDY2 1594 aa24.7■■□□□ 1.54
PPP4R4-201ENST00000304338 LOC105371045A0A1W2PR82 267 aa24.67■■□□□ 1.54
PPP4R4-201ENST00000304338 CECR2Q9BXF3 1484 aa24.64■■□□□ 1.53
PPP4R4-201ENST00000304338 MROH2BQ7Z745 1585 aa24.39■■□□□ 1.49
PPP4R4-201ENST00000304338 PCGF6Q9BYE7 350 aa24.32■■□□□ 1.48
PPP4R4-201ENST00000304338 WIZO95785 1651 aa24.15■■□□□ 1.46
PPP4R4-201ENST00000304338 BAZ1AQ9NRL2 1556 aaPredicted RBP24.12■■□□□ 1.45
PPP4R4-201ENST00000304338 PPARGC1BQ86YN6 1023 aaKnown RBP23.94■■□□□ 1.42
PPP4R4-201ENST00000304338 TTBK1Q5TCY1 1321 aaPredicted RBP23.9■■□□□ 1.42
PPP4R4-201ENST00000304338 SMARCA4P51532 1647 aa23.84■■□□□ 1.41
PPP4R4-201ENST00000304338 UBTFP17480 764 aaKnown RBP23.84■■□□□ 1.41
PPP4R4-201ENST00000304338 RANGAP1P46060 587 aaPredicted RBP23.82■■□□□ 1.4
PPP4R4-201ENST00000304338 CCDC88BA6NC98 1476 aa23.81■■□□□ 1.4
PPP4R4-201ENST00000304338 UNC13AQ9UPW8 1703 aa23.76■■□□□ 1.39
PPP4R4-201ENST00000304338 BICRAQ9NZM4 1560 aa23.73■■□□□ 1.39
PPP4R4-201ENST00000304338 TOP2AP11388 1531 aaKnown RBP23.71■■□□□ 1.39
PPP4R4-201ENST00000304338 TRIM26Q12899 539 aaPredicted RBP23.69■■□□□ 1.38
PPP4R4-201ENST00000304338 BAZ1BQ9UIG0 1483 aaKnown RBP23.66■■□□□ 1.38
PPP4R4-201ENST00000304338 ABCC8Q09428 1581 aa23.64■■□□□ 1.38
PPP4R4-201ENST00000304338 HRCP23327 699 aa23.56■■□□□ 1.36
PPP4R4-201ENST00000304338 ATAD2BQ9ULI0 1458 aa23.56■■□□□ 1.36
PPP4R4-201ENST00000304338 CSRNP3Q8WYN3 585 aa23.55■■□□□ 1.36
PPP4R4-201ENST00000304338 SMARCA2P51531 1590 aa23.53■■□□□ 1.36
PPP4R4-201ENST00000304338 SOGA1O94964 1423 aa23.45■■□□□ 1.34
PPP4R4-201ENST00000304338 WRNQ14191 1432 aaPredicted RBP eCLIP23.45■■□□□ 1.34
PPP4R4-201ENST00000304338 APLP2Q06481 763 aa23.34■■□□□ 1.33
PPP4R4-201ENST00000304338 RUSC2Q8N2Y8 1516 aa23.27■■□□□ 1.32
PPP4R4-201ENST00000304338 EIF4G1Q04637 1599 aaKnown RBP23.23■■□□□ 1.31
PPP4R4-201ENST00000304338 CCER1Q8TC90 406 aaPredicted RBP23.14■■□□□ 1.3
PPP4R4-201ENST00000304338 CEP162Q5TB80 1403 aa23.13■■□□□ 1.29
PPP4R4-201ENST00000304338 PEG3Q9GZU2 1588 aa23.11■■□□□ 1.29
PPP4R4-201ENST00000304338 NCAPD3P42695 1498 aa23.11■■□□□ 1.29
PPP4R4-201ENST00000304338 EEA1Q15075 1411 aa23.1■■□□□ 1.29
PPP4R4-201ENST00000304338 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.09■■□□□ 1.29
PPP4R4-201ENST00000304338 ATP1B4Q9UN42 357 aaPredicted RBP23.05■■□□□ 1.28
PPP4R4-201ENST00000304338 TNIKQ9UKE5 1360 aa23.04■■□□□ 1.28
PPP4R4-201ENST00000304338 GOLGA3Q08378 1498 aa23.03■■□□□ 1.28
PPP4R4-201ENST00000304338 HNRNPUL2Q1KMD3 747 aaKnown RBP23■■□□□ 1.27
PPP4R4-201ENST00000304338 ZEB1P37275 1124 aaPredicted RBP22.99■■□□□ 1.27
PPP4R4-201ENST00000304338 SYNJ1O43426 1573 aa22.98■■□□□ 1.27
PPP4R4-201ENST00000304338 CEP164Q9UPV0 1460 aa22.93■■□□□ 1.26
PPP4R4-201ENST00000304338 CLIP1P30622 1438 aa22.92■■□□□ 1.26
PPP4R4-201ENST00000304338 CADPSQ9ULU8 1353 aa22.9■■□□□ 1.26
PPP4R4-201ENST00000304338 HMGXB3Q12766 1538 aa22.88■■□□□ 1.25
PPP4R4-201ENST00000304338 P3H3Q8IVL6 736 aa22.85■■□□□ 1.25
PPP4R4-201ENST00000304338 RAPGEF2Q9Y4G8 1499 aa22.84■■□□□ 1.25
PPP4R4-201ENST00000304338 KIF27Q86VH2 1401 aa22.83■■□□□ 1.25
PPP4R4-201ENST00000304338 CC2D2AQ9P2K1 1620 aa22.82■■□□□ 1.24
PPP4R4-201ENST00000304338 DNAJC5BQ9UF47 199 aa22.81■■□□□ 1.24
PPP4R4-201ENST00000304338 CFTRP13569 1480 aa22.8■■□□□ 1.24
PPP4R4-201ENST00000304338 ITGAEP38570 1179 aa22.79■■□□□ 1.24
PPP4R4-201ENST00000304338 CUX2O14529 1486 aa22.76■■□□□ 1.23
PPP4R4-201ENST00000304338 CUX1P39880 1505 aa22.69■■□□□ 1.22
PPP4R4-201ENST00000304338 NESP48681 1621 aa22.66■■□□□ 1.22
PPP4R4-201ENST00000304338 TOP2BQ02880 1626 aa22.66■■□□□ 1.22
PPP4R4-201ENST00000304338 FANCD2Q9BXW9 1451 aa22.65■■□□□ 1.22
PPP4R4-201ENST00000304338 CARMIL1Q5VZK9 1371 aa22.6■■□□□ 1.21
PPP4R4-201ENST00000304338 FGD5Q6ZNL6 1462 aa22.56■■□□□ 1.2
PPP4R4-201ENST00000304338 VPS8Q8N3P4 1428 aa22.56■■□□□ 1.2
PPP4R4-201ENST00000304338 IGF1RP08069 1367 aa22.52■■□□□ 1.2
PPP4R4-201ENST00000304338 TDRD9Q8NDG6 1382 aaKnown RBP22.52■■□□□ 1.2
PPP4R4-201ENST00000304338 RAD54L2Q9Y4B4 1467 aa22.51■■□□□ 1.19
PPP4R4-201ENST00000304338 KANK4Q5T7N3 995 aaPredicted RBP22.5■■□□□ 1.19
PPP4R4-201ENST00000304338 KIF21BO75037 1637 aa22.5■■□□□ 1.19
PPP4R4-201ENST00000304338 FAM50AQ14320 339 aaKnown RBP22.46■■□□□ 1.19
PPP4R4-201ENST00000304338 PRXQ9BXM0 1461 aa22.45■■□□□ 1.18
PPP4R4-201ENST00000304338 PDS5BQ9NTI5 1447 aa22.44■■□□□ 1.18
PPP4R4-201ENST00000304338 ARID3CA6NKF2 412 aa22.43■■□□□ 1.18
PPP4R4-201ENST00000304338 FBLN2P98095 1184 aa22.42■■□□□ 1.18
PPP4R4-201ENST00000304338 BIVM-ERCC5R4GMW8 1640 aa22.4■■□□□ 1.18
PPP4R4-201ENST00000304338 TOPBP1Q92547 1522 aa22.31■■□□□ 1.16
PPP4R4-201ENST00000304338 POLA1P09884 1462 aaPredicted RBP22.3■■□□□ 1.16
PPP4R4-201ENST00000304338 ARAP1Q96P48 1450 aa22.29■■□□□ 1.16
PPP4R4-201ENST00000304338 ERICH3Q5RHP9 1530 aa22.29■■□□□ 1.16
PPP4R4-201ENST00000304338 FHOD3Q2V2M9 1422 aa22.2■■□□□ 1.14
PPP4R4-201ENST00000304338 ARHGAP35Q9NRY4 1499 aa22.2■■□□□ 1.14
PPP4R4-201ENST00000304338 ERCC6Q03468 1493 aa22.19■■□□□ 1.14
PPP4R4-201ENST00000304338 DIEXFQ68CQ4 756 aaKnown RBP22.18■■□□□ 1.14
PPP4R4-201ENST00000304338 DNMBPQ6XZF7 1577 aa22.18■■□□□ 1.14
PPP4R4-201ENST00000304338 URB2Q14146 1524 aaKnown RBP22.16■■□□□ 1.14
PPP4R4-201ENST00000304338 GAPVD1Q14C86 1478 aa22.13■■□□□ 1.13
PPP4R4-201ENST00000304338 LAMC3Q9Y6N6 1575 aa22.12■■□□□ 1.13
PPP4R4-201ENST00000304338 AQRO60306 1485 aaKnown RBP eCLIP22.11■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms