RNA–Protein interactions for RNA: ENST00000299333.7

SCN3B-201, Transcript of sodium voltage-gated channel beta subunit 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SCN3B, Length 5,665 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3B-201ENST00000299333 DCAF8L2P0C7V8 631 aa24.56■■□□□ 1.52
SCN3B-201ENST00000299333 PELP1Q8IZL8 1130 aaKnown RBP24.18■■□□□ 1.46
SCN3B-201ENST00000299333 MYT1Q01538 1121 aa23.92■■□□□ 1.42
SCN3B-201ENST00000299333 SUPT5HO00267 1087 aaKnown RBP23.82■■□□□ 1.4
SCN3B-201ENST00000299333 EHMT2Q96KQ7 1210 aa23.48■■□□□ 1.35
SCN3B-201ENST00000299333 ERICH6Q7L0X2 663 aa23.45■■□□□ 1.34
SCN3B-201ENST00000299333 NISCHQ9Y2I1 1504 aa23.19■■□□□ 1.3
SCN3B-201ENST00000299333 CENPBP07199 599 aaPredicted RBP23.11■■□□□ 1.29
SCN3B-201ENST00000299333 CCER1Q8TC90 406 aaPredicted RBP23.05■■□□□ 1.28
SCN3B-201ENST00000299333 PCGF6Q9BYE7 350 aa23.04■■□□□ 1.28
SCN3B-201ENST00000299333 SHROOM4Q9ULL8 1493 aa23■■□□□ 1.27
SCN3B-201ENST00000299333 APLP2Q06481 763 aa22.9■■□□□ 1.26
SCN3B-201ENST00000299333 TTBK1Q5TCY1 1321 aaPredicted RBP22.81■■□□□ 1.24
SCN3B-201ENST00000299333 ZEB1P37275 1124 aaPredicted RBP22.64■■□□□ 1.22
SCN3B-201ENST00000299333 YTHDC1Q96MU7 727 aaKnown RBP22.61■■□□□ 1.21
SCN3B-201ENST00000299333 FAM9AQ8IZU1 332 aaPredicted RBP22.61■■□□□ 1.21
SCN3B-201ENST00000299333 NEFLP07196 543 aa22.55■■□□□ 1.2
SCN3B-201ENST00000299333 RANGAP1P46060 587 aaPredicted RBP22.18■■□□□ 1.14
SCN3B-201ENST00000299333 DAXXQ9UER7 740 aaPredicted RBP22.06■■□□□ 1.12
SCN3B-201ENST00000299333 ATP1B4Q9UN42 357 aaPredicted RBP21.93■■□□□ 1.1
SCN3B-201ENST00000299333 TRIM41Q8WV44 630 aa21.88■■□□□ 1.09
SCN3B-201ENST00000299333 HRCP23327 699 aa21.87■■□□□ 1.09
SCN3B-201ENST00000299333 PPARGC1BQ86YN6 1023 aaKnown RBP21.82■■□□□ 1.08
SCN3B-201ENST00000299333 RTL5Q5HYW3 569 aaPredicted RBP21.75■■□□□ 1.07
SCN3B-201ENST00000299333 UBTFP17480 764 aaKnown RBP21.75■■□□□ 1.07
SCN3B-201ENST00000299333 TRIM26Q12899 539 aaPredicted RBP21.71■■□□□ 1.07
SCN3B-201ENST00000299333 ZNF316A6NFI3 1004 aaPredicted RBP21.55■■□□□ 1.04
SCN3B-201ENST00000299333 POLR3GLQ9BT43 218 aa21.55■■□□□ 1.04
SCN3B-201ENST00000299333 CNGB1Q14028 1251 aaPredicted RBP21.47■■□□□ 1.03
SCN3B-201ENST00000299333 EIF5BO60841 1220 aaKnown RBP21.41■■□□□ 1.02
SCN3B-201ENST00000299333 ITGAEP38570 1179 aa21.36■■□□□ 1.01
SCN3B-201ENST00000299333 DIEXFQ68CQ4 756 aaKnown RBP21.36■■□□□ 1.01
SCN3B-201ENST00000299333 CLSPNQ9HAW4 1339 aa21.36■■□□□ 1.01
SCN3B-201ENST00000299333 GTF3C3Q9Y5Q9 886 aa21.32■■□□□ 1
SCN3B-201ENST00000299333 BCANQ96GW7 911 aa21.31■■□□□ 1
SCN3B-201ENST00000299333 HNRNPUL2Q1KMD3 747 aaKnown RBP21.25■□□□□ 0.99
SCN3B-201ENST00000299333 GLIPR1L2Q4G1C9 344 aa21.25■□□□□ 0.99
SCN3B-201ENST00000299333 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.16■□□□□ 0.98
SCN3B-201ENST00000299333 LOC105371045A0A1W2PR82 267 aa21.15■□□□□ 0.98
SCN3B-201ENST00000299333 CDK11AQ9UQ88 783 aaPredicted RBP21.09■□□□□ 0.97
SCN3B-201ENST00000299333 SLC4A1APQ9BWU0 796 aaKnown RBP20.98■□□□□ 0.95
SCN3B-201ENST00000299333 MYT1LQ9UL68 1186 aa20.95■□□□□ 0.94
SCN3B-201ENST00000299333 ACIN1Q9UKV3 1341 aaKnown RBP20.85■□□□□ 0.93
SCN3B-201ENST00000299333 CHIC1Q5VXU3 224 aa20.81■□□□□ 0.92
SCN3B-201ENST00000299333 ANP32AP39687 249 aaKnown RBP20.79■□□□□ 0.92
SCN3B-201ENST00000299333 ANP32CO43423 234 aa20.76■□□□□ 0.91
SCN3B-201ENST00000299333 NPM2Q86SE8 214 aaKnown RBP20.72■□□□□ 0.91
SCN3B-201ENST00000299333 NEUROD1Q13562 356 aa20.72■□□□□ 0.91
SCN3B-201ENST00000299333 ZBTB47Q9UFB7 747 aaPredicted RBP20.68■□□□□ 0.9
SCN3B-201ENST00000299333 BCL11AQ9H165 835 aa20.67■□□□□ 0.9
SCN3B-201ENST00000299333 FAM50AQ14320 339 aaKnown RBP20.6■□□□□ 0.89
SCN3B-201ENST00000299333 CANXP27824 592 aaKnown RBP20.58■□□□□ 0.88
SCN3B-201ENST00000299333 TRIM52Q96A61 297 aa20.57■□□□□ 0.88
SCN3B-201ENST00000299333 ANP32BQ92688 251 aaKnown RBP20.55■□□□□ 0.88
SCN3B-201ENST00000299333 FKBP8Q14318 412 aa20.5■□□□□ 0.87
SCN3B-201ENST00000299333 NBR1Q14596 966 aa20.49■□□□□ 0.87
SCN3B-201ENST00000299333 ZNF326Q5BKZ1 582 aaKnown RBP20.49■□□□□ 0.87
SCN3B-201ENST00000299333 ARXQ96QS3 562 aa20.36■□□□□ 0.85
SCN3B-201ENST00000299333 HSP90AA1P07900 732 aaKnown RBP20.35■□□□□ 0.85
SCN3B-201ENST00000299333 SLC24A1O60721 1099 aa20.33■□□□□ 0.84
SCN3B-201ENST00000299333 TNNT2P45379 298 aaPredicted RBP20.24■□□□□ 0.83
SCN3B-201ENST00000299333 SCAF1Q9H7N4 1312 aaKnown RBP20.24■□□□□ 0.83
SCN3B-201ENST00000299333 UPF2Q9HAU5 1272 aaKnown RBP20.22■□□□□ 0.83
SCN3B-201ENST00000299333 HNRNPUQ00839 825 aaKnown RBP eCLIP20.18■□□□□ 0.82
SCN3B-201ENST00000299333 NEFMP07197 916 aa20.17■□□□□ 0.82
SCN3B-201ENST00000299333 CDK11BP21127 795 aaKnown RBP20.14■□□□□ 0.81
SCN3B-201ENST00000299333 CCDC136Q96JN2 1154 aa20.11■□□□□ 0.81
SCN3B-201ENST00000299333 AMER1Q5JTC6 1135 aaPredicted RBP20.08■□□□□ 0.81
SCN3B-201ENST00000299333 FAM9BQ8IZU0 186 aa20.08■□□□□ 0.8
SCN3B-201ENST00000299333 SALL2Q9Y467 1007 aaPredicted RBP20.03■□□□□ 0.8
SCN3B-201ENST00000299333 ANP32EQ9BTT0 268 aa20.02■□□□□ 0.8
SCN3B-201ENST00000299333 RTN4Q9NQC3 1192 aaKnown RBP20.01■□□□□ 0.79
SCN3B-201ENST00000299333 DDX10Q13206 875 aaKnown RBP20■□□□□ 0.79
SCN3B-201ENST00000299333 IRX6P78412 446 aaPredicted RBP20■□□□□ 0.79
SCN3B-201ENST00000299333 TRIM44Q96DX7 344 aaPredicted RBP19.96■□□□□ 0.79
SCN3B-201ENST00000299333 GOLGA6L2Q8N9W4 650 aaPredicted RBP19.9■□□□□ 0.78
SCN3B-201ENST00000299333 NAP1L5Q96NT1 182 aaPredicted RBP19.87■□□□□ 0.77
SCN3B-201ENST00000299333 MIER1Q8N108 512 aa19.84■□□□□ 0.77
SCN3B-201ENST00000299333 TONSLQ96HA7 1378 aa19.81■□□□□ 0.76
SCN3B-201ENST00000299333 DDRGK1Q96HY6 314 aa19.81■□□□□ 0.76
SCN3B-201ENST00000299333 TMC1Q8TDI8 760 aa19.8■□□□□ 0.76
SCN3B-201ENST00000299333 ERICH6BQ5W0A0 696 aa19.78■□□□□ 0.76
SCN3B-201ENST00000299333 BECN1Q14457 450 aa19.76■□□□□ 0.75
SCN3B-201ENST00000299333 MRS2Q9HD23 443 aa19.75■□□□□ 0.75
SCN3B-201ENST00000299333 ARID3CA6NKF2 412 aa19.74■□□□□ 0.75
SCN3B-201ENST00000299333 P3H3Q8IVL6 736 aa19.73■□□□□ 0.75
SCN3B-201ENST00000299333 DNTTIP2Q5QJE6 756 aaKnown RBP19.73■□□□□ 0.75
SCN3B-201ENST00000299333 PTMAP06454 111 aaKnown RBP19.72■□□□□ 0.75
SCN3B-201ENST00000299333 NCLP19338 710 aaKnown RBP19.71■□□□□ 0.75
SCN3B-201ENST00000299333 GOLGA6L22H0YM25 854 aa19.68■□□□□ 0.74
SCN3B-201ENST00000299333 LAS1LQ9Y4W2 734 aaKnown RBP19.68■□□□□ 0.74
SCN3B-201ENST00000299333 ZNF777Q9ULD5 760 aaPredicted RBP19.67■□□□□ 0.74
SCN3B-201ENST00000299333 WDR43Q15061 677 aaKnown RBP eCLIP19.66■□□□□ 0.74
SCN3B-201ENST00000299333 PPM1GO15355 546 aaPredicted RBP19.65■□□□□ 0.74
SCN3B-201ENST00000299333 DCAF1Q9Y4B6 1507 aa19.64■□□□□ 0.73
SCN3B-201ENST00000299333 ZBTB4Q9P1Z0 1013 aaPredicted RBP19.61■□□□□ 0.73
SCN3B-201ENST00000299333 HIRIP3Q9BW71 556 aaPredicted RBP19.6■□□□□ 0.73
SCN3B-201ENST00000299333 MYH16Q9H6N6 1097 aa19.59■□□□□ 0.73
SCN3B-201ENST00000299333 TPRNQ4KMQ1 711 aa19.58■□□□□ 0.73
SCN3B-201ENST00000299333 NOP58Q9Y2X3 529 aaKnown RBP19.58■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 55 ms