RNA–Protein interactions for RNA: ENST00000295225.9

KCNIP3-201, Transcript of potassium voltage-gated channel interacting protein 3, humanhuman

TSL 1 (best) BASIC

Gene KCNIP3, Length 2,940 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
KCNIP3-201ENST00000295225 NISCHQ9Y2I1 1504 aa26.62■■□□□ 1.85
KCNIP3-201ENST00000295225 SHROOM4Q9ULL8 1493 aa23.62■■□□□ 1.37
KCNIP3-201ENST00000295225 SUPT5HO00267 1087 aaKnown RBP23.2■■□□□ 1.3
KCNIP3-201ENST00000295225 DCAF8L2P0C7V8 631 aa22.96■■□□□ 1.27
KCNIP3-201ENST00000295225 PELP1Q8IZL8 1130 aaKnown RBP22.57■■□□□ 1.2
KCNIP3-201ENST00000295225 MYT1Q01538 1121 aa22.53■■□□□ 1.2
KCNIP3-201ENST00000295225 CCDC180Q9P1Z9 1646 aa22.45■■□□□ 1.18
KCNIP3-201ENST00000295225 ZCCHC6Q5VYS8 1495 aaKnown RBP22.43■■□□□ 1.18
KCNIP3-201ENST00000295225 MYO15BQ96JP2 1530 aa22.29■■□□□ 1.16
KCNIP3-201ENST00000295225 CHIC1Q5VXU3 224 aa22.26■■□□□ 1.15
KCNIP3-201ENST00000295225 PCGF6Q9BYE7 350 aa22.05■■□□□ 1.12
KCNIP3-201ENST00000295225 LOC105371045A0A1W2PR82 267 aa21.99■■□□□ 1.11
KCNIP3-201ENST00000295225 SLC24A1O60721 1099 aa21.97■■□□□ 1.11
KCNIP3-201ENST00000295225 TTBK1Q5TCY1 1321 aaPredicted RBP21.94■■□□□ 1.1
KCNIP3-201ENST00000295225 PPARGC1BQ86YN6 1023 aaKnown RBP21.86■■□□□ 1.09
KCNIP3-201ENST00000295225 HRCP23327 699 aa21.78■■□□□ 1.08
KCNIP3-201ENST00000295225 EHMT2Q96KQ7 1210 aa21.77■■□□□ 1.08
KCNIP3-201ENST00000295225 FAM9AQ8IZU1 332 aaPredicted RBP21.59■■□□□ 1.05
KCNIP3-201ENST00000295225 DCAF1Q9Y4B6 1507 aa21.57■■□□□ 1.04
KCNIP3-201ENST00000295225 ABCC9O60706 1549 aa21.45■■□□□ 1.02
KCNIP3-201ENST00000295225 SCRIBQ14160 1630 aa21.44■■□□□ 1.02
KCNIP3-201ENST00000295225 PRKCSHP14314 528 aaPredicted RBP21.39■■□□□ 1.01
KCNIP3-201ENST00000295225 TRIM41Q8WV44 630 aa21.3■■□□□ 1
KCNIP3-201ENST00000295225 RSF1Q96T23 1441 aaPredicted RBP21.21■□□□□ 0.99
KCNIP3-201ENST00000295225 TRIM26Q12899 539 aaPredicted RBP21.16■□□□□ 0.98
KCNIP3-201ENST00000295225 ERICH6Q7L0X2 663 aa21.12■□□□□ 0.97
KCNIP3-201ENST00000295225 RB1CC1Q8TDY2 1594 aa21.09■□□□□ 0.97
KCNIP3-201ENST00000295225 APLP2Q06481 763 aa21.09■□□□□ 0.97
KCNIP3-201ENST00000295225 CECR2Q9BXF3 1484 aa21.03■□□□□ 0.96
KCNIP3-201ENST00000295225 NACADO15069 1562 aa20.89■□□□□ 0.93
KCNIP3-201ENST00000295225 MROH2BQ7Z745 1585 aa20.84■□□□□ 0.93
KCNIP3-201ENST00000295225 WIZO95785 1651 aa20.75■□□□□ 0.91
KCNIP3-201ENST00000295225 DAXXQ9UER7 740 aaPredicted RBP20.74■□□□□ 0.91
KCNIP3-201ENST00000295225 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.73■□□□□ 0.91
KCNIP3-201ENST00000295225 PABPN1Q86U42 306 aaKnown RBP eCLIP20.66■□□□□ 0.9
KCNIP3-201ENST00000295225 CCER1Q8TC90 406 aaPredicted RBP20.51■□□□□ 0.87
KCNIP3-201ENST00000295225 ABCC8Q09428 1581 aa20.51■□□□□ 0.87
KCNIP3-201ENST00000295225 ZEB1P37275 1124 aaPredicted RBP20.5■□□□□ 0.87
KCNIP3-201ENST00000295225 RANGAP1P46060 587 aaPredicted RBP20.43■□□□□ 0.86
KCNIP3-201ENST00000295225 CCDC88BA6NC98 1476 aa20.42■□□□□ 0.86
KCNIP3-201ENST00000295225 BAZ1AQ9NRL2 1556 aaPredicted RBP20.41■□□□□ 0.86
KCNIP3-201ENST00000295225 SCAF1Q9H7N4 1312 aaKnown RBP20.39■□□□□ 0.85
KCNIP3-201ENST00000295225 UBTFP17480 764 aaKnown RBP20.38■□□□□ 0.85
KCNIP3-201ENST00000295225 UNC13AQ9UPW8 1703 aa20.38■□□□□ 0.85
KCNIP3-201ENST00000295225 SOGA1O94964 1423 aa20.37■□□□□ 0.85
KCNIP3-201ENST00000295225 RUSC2Q8N2Y8 1516 aa20.33■□□□□ 0.84
KCNIP3-201ENST00000295225 BCL11AQ9H165 835 aa20.3■□□□□ 0.84
KCNIP3-201ENST00000295225 SMARCA4P51532 1647 aa20.29■□□□□ 0.84
KCNIP3-201ENST00000295225 TOP2AP11388 1531 aaKnown RBP20.2■□□□□ 0.82
KCNIP3-201ENST00000295225 CEP162Q5TB80 1403 aa20.19■□□□□ 0.82
KCNIP3-201ENST00000295225 EIF4G1Q04637 1599 aaKnown RBP20.18■□□□□ 0.82
KCNIP3-201ENST00000295225 HNRNPUL2Q1KMD3 747 aaKnown RBP20.17■□□□□ 0.82
KCNIP3-201ENST00000295225 CSRNP3Q8WYN3 585 aa20.16■□□□□ 0.82
KCNIP3-201ENST00000295225 SMARCA2P51531 1590 aa20.15■□□□□ 0.82
KCNIP3-201ENST00000295225 NEUROD1Q13562 356 aa20.13■□□□□ 0.81
KCNIP3-201ENST00000295225 BICRAQ9NZM4 1560 aa20.13■□□□□ 0.81
KCNIP3-201ENST00000295225 DIEXFQ68CQ4 756 aaKnown RBP20.11■□□□□ 0.81
KCNIP3-201ENST00000295225 YTHDC1Q96MU7 727 aaKnown RBP20.06■□□□□ 0.8
KCNIP3-201ENST00000295225 TNIKQ9UKE5 1360 aa19.96■□□□□ 0.79
KCNIP3-201ENST00000295225 ACIN1Q9UKV3 1341 aaKnown RBP19.95■□□□□ 0.78
KCNIP3-201ENST00000295225 GTF3C3Q9Y5Q9 886 aa19.95■□□□□ 0.78
KCNIP3-201ENST00000295225 WRNQ14191 1432 aaPredicted RBP eCLIP19.92■□□□□ 0.78
KCNIP3-201ENST00000295225 EIF5BO60841 1220 aaKnown RBP19.89■□□□□ 0.77
KCNIP3-201ENST00000295225 ATAD2BQ9ULI0 1458 aa19.86■□□□□ 0.77
KCNIP3-201ENST00000295225 BAZ1BQ9UIG0 1483 aaKnown RBP19.85■□□□□ 0.77
KCNIP3-201ENST00000295225 SYNJ1O43426 1573 aa19.83■□□□□ 0.76
KCNIP3-201ENST00000295225 GOLGA3Q08378 1498 aa19.82■□□□□ 0.76
KCNIP3-201ENST00000295225 ZNF316A6NFI3 1004 aaPredicted RBP19.79■□□□□ 0.76
KCNIP3-201ENST00000295225 CLIP1P30622 1438 aa19.77■□□□□ 0.76
KCNIP3-201ENST00000295225 MIER1Q8N108 512 aa19.77■□□□□ 0.76
KCNIP3-201ENST00000295225 RAPGEF2Q9Y4G8 1499 aa19.76■□□□□ 0.75
KCNIP3-201ENST00000295225 ITGAEP38570 1179 aa19.72■□□□□ 0.75
KCNIP3-201ENST00000295225 PEG3Q9GZU2 1588 aa19.71■□□□□ 0.75
KCNIP3-201ENST00000295225 CENPBP07199 599 aaPredicted RBP19.7■□□□□ 0.74
KCNIP3-201ENST00000295225 EEA1Q15075 1411 aa19.68■□□□□ 0.74
KCNIP3-201ENST00000295225 KANK4Q5T7N3 995 aaPredicted RBP19.66■□□□□ 0.74
KCNIP3-201ENST00000295225 CEP164Q9UPV0 1460 aa19.65■□□□□ 0.74
KCNIP3-201ENST00000295225 VPS8Q8N3P4 1428 aa19.57■□□□□ 0.72
KCNIP3-201ENST00000295225 KIF21BO75037 1637 aa19.51■□□□□ 0.71
KCNIP3-201ENST00000295225 ATP1B4Q9UN42 357 aaPredicted RBP19.46■□□□□ 0.71
KCNIP3-201ENST00000295225 P3H3Q8IVL6 736 aa19.46■□□□□ 0.71
KCNIP3-201ENST00000295225 NCBP3Q53F19 620 aaKnown RBP19.45■□□□□ 0.7
KCNIP3-201ENST00000295225 NCAPD3P42695 1498 aa19.4■□□□□ 0.7
KCNIP3-201ENST00000295225 TOP2BQ02880 1626 aa19.39■□□□□ 0.69
KCNIP3-201ENST00000295225 ARAP1Q96P48 1450 aa19.38■□□□□ 0.69
KCNIP3-201ENST00000295225 DHX57Q6P158 1386 aaKnown RBP19.35■□□□□ 0.69
KCNIP3-201ENST00000295225 CUX1P39880 1505 aa19.35■□□□□ 0.69
KCNIP3-201ENST00000295225 KCNH8Q96L42 1107 aa19.33■□□□□ 0.69
KCNIP3-201ENST00000295225 HIRIP3Q9BW71 556 aaPredicted RBP19.31■□□□□ 0.68
KCNIP3-201ENST00000295225 PLEKHG5O94827 1062 aa19.31■□□□□ 0.68
KCNIP3-201ENST00000295225 HMGXB3Q12766 1538 aa19.3■□□□□ 0.68
KCNIP3-201ENST00000295225 PRXQ9BXM0 1461 aa19.28■□□□□ 0.68
KCNIP3-201ENST00000295225 FAM50AQ14320 339 aaKnown RBP19.26■□□□□ 0.67
KCNIP3-201ENST00000295225 CFTRP13569 1480 aa19.25■□□□□ 0.67
KCNIP3-201ENST00000295225 BIVM-ERCC5R4GMW8 1640 aa19.25■□□□□ 0.67
KCNIP3-201ENST00000295225 SIN3AQ96ST3 1273 aa19.24■□□□□ 0.67
KCNIP3-201ENST00000295225 KIF27Q86VH2 1401 aa19.24■□□□□ 0.67
KCNIP3-201ENST00000295225 ARHGAP35Q9NRY4 1499 aa19.19■□□□□ 0.66
KCNIP3-201ENST00000295225 CUX2O14529 1486 aa19.18■□□□□ 0.66
KCNIP3-201ENST00000295225 CCNB3Q8WWL7 1395 aa19.16■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms