RNA–Protein interactions for RNA: ENST00000292535.11

CUX1-201, Transcript of cut like homeobox 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CUX1, Length 13,747 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-201ENST00000292535 DCAF8L2P0C7V8 631 aa15.69■□□□□ 0.1
CUX1-201ENST00000292535 PELP1Q8IZL8 1130 aaKnown RBP15.13■□□□□ 0.01
CUX1-201ENST00000292535 SUPT5HO00267 1087 aaKnown RBP14.71□□□□□ -0.05
CUX1-201ENST00000292535 FAM9AQ8IZU1 332 aaPredicted RBP14.68□□□□□ -0.06
CUX1-201ENST00000292535 APLP2Q06481 763 aa14.64□□□□□ -0.07
CUX1-201ENST00000292535 CCER1Q8TC90 406 aaPredicted RBP14.39□□□□□ -0.11
CUX1-201ENST00000292535 EHMT2Q96KQ7 1210 aa14.33□□□□□ -0.11
CUX1-201ENST00000292535 ERICH6Q7L0X2 663 aa14.33□□□□□ -0.12
CUX1-201ENST00000292535 SHROOM4Q9ULL8 1493 aa14.32□□□□□ -0.12
CUX1-201ENST00000292535 NISCHQ9Y2I1 1504 aa14.22□□□□□ -0.13
CUX1-201ENST00000292535 CENPBP07199 599 aaPredicted RBP14.14□□□□□ -0.15
CUX1-201ENST00000292535 ZEB1P37275 1124 aaPredicted RBP14.05□□□□□ -0.16
CUX1-201ENST00000292535 NEFLP07196 543 aa14□□□□□ -0.17
CUX1-201ENST00000292535 PCGF6Q9BYE7 350 aa13.96□□□□□ -0.17
CUX1-201ENST00000292535 MYT1Q01538 1121 aa13.95□□□□□ -0.18
CUX1-201ENST00000292535 TTBK1Q5TCY1 1321 aaPredicted RBP13.94□□□□□ -0.18
CUX1-201ENST00000292535 ATP1B4Q9UN42 357 aaPredicted RBP13.92□□□□□ -0.18
CUX1-201ENST00000292535 DAXXQ9UER7 740 aaPredicted RBP13.84□□□□□ -0.19
CUX1-201ENST00000292535 RANGAP1P46060 587 aaPredicted RBP13.84□□□□□ -0.19
CUX1-201ENST00000292535 YTHDC1Q96MU7 727 aaKnown RBP13.78□□□□□ -0.2
CUX1-201ENST00000292535 UBTFP17480 764 aaKnown RBP13.77□□□□□ -0.2
CUX1-201ENST00000292535 TRIM41Q8WV44 630 aa13.75□□□□□ -0.21
CUX1-201ENST00000292535 MYT1LQ9UL68 1186 aa13.57□□□□□ -0.24
CUX1-201ENST00000292535 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.46□□□□□ -0.25
CUX1-201ENST00000292535 HNRNPUL2Q1KMD3 747 aaKnown RBP13.46□□□□□ -0.25
CUX1-201ENST00000292535 ZNF316A6NFI3 1004 aaPredicted RBP13.45□□□□□ -0.26
CUX1-201ENST00000292535 POLR3GLQ9BT43 218 aa13.43□□□□□ -0.26
CUX1-201ENST00000292535 RTL5Q5HYW3 569 aaPredicted RBP13.39□□□□□ -0.27
CUX1-201ENST00000292535 SLC4A1APQ9BWU0 796 aaKnown RBP13.36□□□□□ -0.27
CUX1-201ENST00000292535 CLSPNQ9HAW4 1339 aa13.32□□□□□ -0.28
CUX1-201ENST00000292535 TRIM26Q12899 539 aaPredicted RBP13.31□□□□□ -0.28
CUX1-201ENST00000292535 ITGAEP38570 1179 aa13.28□□□□□ -0.28
CUX1-201ENST00000292535 CHIC1Q5VXU3 224 aa13.26□□□□□ -0.29
CUX1-201ENST00000292535 ZBTB47Q9UFB7 747 aaPredicted RBP13.21□□□□□ -0.29
CUX1-201ENST00000292535 PPARGC1BQ86YN6 1023 aaKnown RBP13.18□□□□□ -0.3
CUX1-201ENST00000292535 HRCP23327 699 aa13.12□□□□□ -0.31
CUX1-201ENST00000292535 CNGB1Q14028 1251 aaPredicted RBP13.1□□□□□ -0.31
CUX1-201ENST00000292535 NEFMP07197 916 aa13.07□□□□□ -0.32
CUX1-201ENST00000292535 TRIM52Q96A61 297 aa12.98□□□□□ -0.33
CUX1-201ENST00000292535 ANP32CO43423 234 aa12.97□□□□□ -0.33
CUX1-201ENST00000292535 CANXP27824 592 aaKnown RBP12.97□□□□□ -0.33
CUX1-201ENST00000292535 FAM50AQ14320 339 aaKnown RBP12.97□□□□□ -0.33
CUX1-201ENST00000292535 SLC24A1O60721 1099 aa12.93□□□□□ -0.34
CUX1-201ENST00000292535 ANP32BQ92688 251 aaKnown RBP12.92□□□□□ -0.34
CUX1-201ENST00000292535 DIEXFQ68CQ4 756 aaKnown RBP12.91□□□□□ -0.34
CUX1-201ENST00000292535 CDK11AQ9UQ88 783 aaPredicted RBP12.91□□□□□ -0.34
CUX1-201ENST00000292535 BCANQ96GW7 911 aa12.88□□□□□ -0.35
CUX1-201ENST00000292535 NEUROD1Q13562 356 aa12.84□□□□□ -0.35
CUX1-201ENST00000292535 ZNF326Q5BKZ1 582 aaKnown RBP12.82□□□□□ -0.36
CUX1-201ENST00000292535 ANP32AP39687 249 aaKnown RBP12.81□□□□□ -0.36
CUX1-201ENST00000292535 HSP90AA1P07900 732 aaKnown RBP12.81□□□□□ -0.36
CUX1-201ENST00000292535 ESF1Q9H501 851 aaKnown RBP12.78□□□□□ -0.36
CUX1-201ENST00000292535 LOC105371045A0A1W2PR82 267 aa12.78□□□□□ -0.36
CUX1-201ENST00000292535 BCL11AQ9H165 835 aa12.76□□□□□ -0.37
CUX1-201ENST00000292535 FBLN2P98095 1184 aa12.72□□□□□ -0.37
CUX1-201ENST00000292535 UPF2Q9HAU5 1272 aaKnown RBP12.7□□□□□ -0.38
CUX1-201ENST00000292535 STAG3Q9UJ98 1225 aa12.67□□□□□ -0.38
CUX1-201ENST00000292535 CDK11BP21127 795 aaKnown RBP12.63□□□□□ -0.39
CUX1-201ENST00000292535 GTF3C3Q9Y5Q9 886 aa12.59□□□□□ -0.39
CUX1-201ENST00000292535 GOLGA6L2Q8N9W4 650 aaPredicted RBP12.58□□□□□ -0.4
CUX1-201ENST00000292535 GLIPR1L2Q4G1C9 344 aa12.56□□□□□ -0.4
CUX1-201ENST00000292535 ZNF777Q9ULD5 760 aaPredicted RBP12.54□□□□□ -0.4
CUX1-201ENST00000292535 PABPN1Q86U42 306 aaKnown RBP eCLIP12.54□□□□□ -0.4
CUX1-201ENST00000292535 NPM2Q86SE8 214 aaKnown RBP12.54□□□□□ -0.4
CUX1-201ENST00000292535 MYH16Q9H6N6 1097 aa12.52□□□□□ -0.41
CUX1-201ENST00000292535 EIF5BO60841 1220 aaKnown RBP12.5□□□□□ -0.41
CUX1-201ENST00000292535 CHGAP10645 457 aaKnown RBP12.48□□□□□ -0.41
CUX1-201ENST00000292535 NPM1P06748 294 aaKnown RBP eCLIP12.46□□□□□ -0.42
CUX1-201ENST00000292535 TONSLQ96HA7 1378 aa12.45□□□□□ -0.42
CUX1-201ENST00000292535 ARID3CA6NKF2 412 aa12.45□□□□□ -0.42
CUX1-201ENST00000292535 ANP32EQ9BTT0 268 aa12.42□□□□□ -0.42
CUX1-201ENST00000292535 P3H3Q8IVL6 736 aa12.41□□□□□ -0.42
CUX1-201ENST00000292535 WDR43Q15061 677 aaKnown RBP eCLIP12.41□□□□□ -0.42
CUX1-201ENST00000292535 CCDC136Q96JN2 1154 aa12.4□□□□□ -0.42
CUX1-201ENST00000292535 ABCC9O60706 1549 aa12.39□□□□□ -0.43
CUX1-201ENST00000292535 SCAF1Q9H7N4 1312 aaKnown RBP12.39□□□□□ -0.43
CUX1-201ENST00000292535 GOLGA6L22H0YM25 854 aa12.39□□□□□ -0.43
CUX1-201ENST00000292535 PLPPR3Q6T4P5 718 aa12.39□□□□□ -0.43
CUX1-201ENST00000292535 NCLP19338 710 aaKnown RBP12.37□□□□□ -0.43
CUX1-201ENST00000292535 TMC1Q8TDI8 760 aa12.37□□□□□ -0.43
CUX1-201ENST00000292535 A0A0G2JS52 829 aa12.36□□□□□ -0.43
CUX1-201ENST00000292535 BECN1Q14457 450 aa12.36□□□□□ -0.43
CUX1-201ENST00000292535 CSRNP3Q8WYN3 585 aa12.35□□□□□ -0.43
CUX1-201ENST00000292535 ACIN1Q9UKV3 1341 aaKnown RBP12.35□□□□□ -0.43
CUX1-201ENST00000292535 HNRNPUQ00839 825 aaKnown RBP eCLIP12.34□□□□□ -0.43
CUX1-201ENST00000292535 DDRGK1Q96HY6 314 aa12.31□□□□□ -0.44
CUX1-201ENST00000292535 ZRSR1Q15695 479 aaKnown RBP12.31□□□□□ -0.44
CUX1-201ENST00000292535 CASC1Q6TDU7 716 aa12.31□□□□□ -0.44
CUX1-201ENST00000292535 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.3□□□□□ -0.441e-6■■□□□ 14.2
CUX1-201ENST00000292535 C14orf37Q86TY3 774 aa12.3□□□□□ -0.44
CUX1-201ENST00000292535 FAM9BQ8IZU0 186 aa12.29□□□□□ -0.44
CUX1-201ENST00000292535 FKBP8Q14318 412 aa12.29□□□□□ -0.44
CUX1-201ENST00000292535 TNNT2P45379 298 aaPredicted RBP12.29□□□□□ -0.44
CUX1-201ENST00000292535 TSPY4P0CV99 314 aa12.28□□□□□ -0.44
CUX1-201ENST00000292535 TSPY10P0CW01 314 aa12.28□□□□□ -0.44
CUX1-201ENST00000292535 TRIM44Q96DX7 344 aaPredicted RBP12.26□□□□□ -0.45
CUX1-201ENST00000292535 NBR1Q14596 966 aa12.26□□□□□ -0.45
CUX1-201ENST00000292535 MRS2Q9HD23 443 aa12.25□□□□□ -0.45
CUX1-201ENST00000292535 ARXQ96QS3 562 aa12.24□□□□□ -0.45
CUX1-201ENST00000292535 CDCA8Q53HL2 280 aa12.23□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 7.9 ms