RNA–Protein interactions for RNA: ENST00000287546.8

VPS8-201, Transcript of VPS8, CORVET complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS8, Length 5,047 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS8-201ENST00000287546 NISCHQ9Y2I1 1504 aa13.99□□□□□ -0.17
VPS8-201ENST00000287546 DCAF8L2P0C7V8 631 aa12.17□□□□□ -0.46
VPS8-201ENST00000287546 CCDC180Q9P1Z9 1646 aa12.03□□□□□ -0.48
VPS8-201ENST00000287546 ABCC9O60706 1549 aa11.92□□□□□ -0.5
VPS8-201ENST00000287546 SHROOM4Q9ULL8 1493 aa11.89□□□□□ -0.51
VPS8-201ENST00000287546 ZCCHC6Q5VYS8 1495 aaKnown RBP11.75□□□□□ -0.53
VPS8-201ENST00000287546 SUPT5HO00267 1087 aaKnown RBP11.74□□□□□ -0.53
VPS8-201ENST00000287546 DCAF1Q9Y4B6 1507 aa11.51□□□□□ -0.57
VPS8-201ENST00000287546 PABPN1Q86U42 306 aaKnown RBP eCLIP11.36□□□□□ -0.59
VPS8-201ENST00000287546 NACADO15069 1562 aa11.33□□□□□ -0.6
VPS8-201ENST00000287546 SCRIBQ14160 1630 aa11.32□□□□□ -0.6
VPS8-201ENST00000287546 RB1CC1Q8TDY2 1594 aa11.32□□□□□ -0.6
VPS8-201ENST00000287546 MYO15BQ96JP2 1530 aa11.29□□□□□ -0.6
VPS8-201ENST00000287546 FAM9AQ8IZU1 332 aaPredicted RBP11.25□□□□□ -0.61
VPS8-201ENST00000287546 CHIC1Q5VXU3 224 aa11.12□□□□□ -0.63
VPS8-201ENST00000287546 TRIM41Q8WV44 630 aa11.06□□□□□ -0.64
VPS8-201ENST00000287546 RSF1Q96T23 1441 aaPredicted RBP10.97□□□□□ -0.65
VPS8-201ENST00000287546 CECR2Q9BXF3 1484 aa10.96□□□□□ -0.66
VPS8-201ENST00000287546 UNC13AQ9UPW8 1703 aa10.95□□□□□ -0.66
VPS8-201ENST00000287546 BICRAQ9NZM4 1560 aa10.92□□□□□ -0.66
VPS8-201ENST00000287546 BAZ1AQ9NRL2 1556 aaPredicted RBP10.9□□□□□ -0.66
VPS8-201ENST00000287546 MROH2BQ7Z745 1585 aa10.81□□□□□ -0.68
VPS8-201ENST00000287546 EHMT2Q96KQ7 1210 aa10.74□□□□□ -0.69
VPS8-201ENST00000287546 PCGF6Q9BYE7 350 aa10.72□□□□□ -0.69
VPS8-201ENST00000287546 LOC105371045A0A1W2PR82 267 aa10.72□□□□□ -0.69
VPS8-201ENST00000287546 SMARCA4P51532 1647 aa10.69□□□□□ -0.7
VPS8-201ENST00000287546 WIZO95785 1651 aa10.69□□□□□ -0.7
VPS8-201ENST00000287546 EIF4G1Q04637 1599 aaKnown RBP10.69□□□□□ -0.7
VPS8-201ENST00000287546 DNAJC5BQ9UF47 199 aa10.68□□□□□ -0.7
VPS8-201ENST00000287546 TOP2AP11388 1531 aaKnown RBP10.67□□□□□ -0.7
VPS8-201ENST00000287546 APLP2Q06481 763 aa10.67□□□□□ -0.7
VPS8-201ENST00000287546 TRIM26Q12899 539 aaPredicted RBP10.66□□□□□ -0.7
VPS8-201ENST00000287546 UBTFP17480 764 aaKnown RBP10.65□□□□□ -0.7
VPS8-201ENST00000287546 ATAD2BQ9ULI0 1458 aa10.64□□□□□ -0.71
VPS8-201ENST00000287546 BAZ1BQ9UIG0 1483 aaKnown RBP10.63□□□□□ -0.71
VPS8-201ENST00000287546 SMARCA2P51531 1590 aa10.63□□□□□ -0.71
VPS8-201ENST00000287546 ZEB1P37275 1124 aaPredicted RBP10.61□□□□□ -0.71
VPS8-201ENST00000287546 CC2D2AQ9P2K1 1620 aa10.59□□□□□ -0.71
VPS8-201ENST00000287546 EEA1Q15075 1411 aa10.59□□□□□ -0.71
VPS8-201ENST00000287546 CCDC88BA6NC98 1476 aa10.56□□□□□ -0.72
VPS8-201ENST00000287546 CSRNP3Q8WYN3 585 aa10.53□□□□□ -0.72
VPS8-201ENST00000287546 HRCP23327 699 aa10.51□□□□□ -0.73
VPS8-201ENST00000287546 NCAPD3P42695 1498 aa10.51□□□□□ -0.73
VPS8-201ENST00000287546 WRNQ14191 1432 aaPredicted RBP eCLIP10.5□□□□□ -0.73
VPS8-201ENST00000287546 MYT1LQ9UL68 1186 aa10.5□□□□□ -0.73
VPS8-201ENST00000287546 PEG3Q9GZU2 1588 aa10.43□□□□□ -0.74
VPS8-201ENST00000287546 GOLGA3Q08378 1498 aa10.41□□□□□ -0.74
VPS8-201ENST00000287546 HMGXB3Q12766 1538 aa10.4□□□□□ -0.74
VPS8-201ENST00000287546 RANGAP1P46060 587 aaPredicted RBP10.39□□□□□ -0.75
VPS8-201ENST00000287546 ABCC8Q09428 1581 aa10.39□□□□□ -0.75
VPS8-201ENST00000287546 CCER1Q8TC90 406 aaPredicted RBP10.38□□□□□ -0.75
VPS8-201ENST00000287546 CEP164Q9UPV0 1460 aa10.38□□□□□ -0.75
VPS8-201ENST00000287546 TNIKQ9UKE5 1360 aa10.38□□□□□ -0.75
VPS8-201ENST00000287546 TTBK1Q5TCY1 1321 aaPredicted RBP10.37□□□□□ -0.75
VPS8-201ENST00000287546 NESP48681 1621 aa10.36□□□□□ -0.75
VPS8-201ENST00000287546 CADPSQ9ULU8 1353 aa10.35□□□□□ -0.75
VPS8-201ENST00000287546 PPARGC1BQ86YN6 1023 aaKnown RBP10.33□□□□□ -0.76
VPS8-201ENST00000287546 CEP162Q5TB80 1403 aa10.33□□□□□ -0.76
VPS8-201ENST00000287546 KIF27Q86VH2 1401 aa10.32□□□□□ -0.76
VPS8-201ENST00000287546 PELP1Q8IZL8 1130 aaKnown RBP10.31□□□□□ -0.76
VPS8-201ENST00000287546 ATP1B4Q9UN42 357 aaPredicted RBP10.3□□□□□ -0.76
VPS8-201ENST00000287546 SOGA1O94964 1423 aa10.3□□□□□ -0.76
VPS8-201ENST00000287546 CLIP1P30622 1438 aa10.28□□□□□ -0.76
VPS8-201ENST00000287546 ERCC6Q03468 1493 aa10.26□□□□□ -0.77
VPS8-201ENST00000287546 CFTRP13569 1480 aa10.26□□□□□ -0.77
VPS8-201ENST00000287546 FANCD2Q9BXW9 1451 aa10.23□□□□□ -0.77
VPS8-201ENST00000287546 PDS5BQ9NTI5 1447 aa10.23□□□□□ -0.77
VPS8-201ENST00000287546 TOP2BQ02880 1626 aa10.17□□□□□ -0.78
VPS8-201ENST00000287546 SYNJ1O43426 1573 aa10.17□□□□□ -0.78
VPS8-201ENST00000287546 KIF21BO75037 1637 aa10.17□□□□□ -0.78
VPS8-201ENST00000287546 HNRNPUL2Q1KMD3 747 aaKnown RBP10.16□□□□□ -0.78
VPS8-201ENST00000287546 CUX2O14529 1486 aa10.16□□□□□ -0.78
VPS8-201ENST00000287546 VPS8Q8N3P4 1428 aa10.14□□□□□ -0.79
VPS8-201ENST00000287546 LAMC3Q9Y6N6 1575 aa10.14□□□□□ -0.79
VPS8-201ENST00000287546 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.14□□□□□ -0.79
VPS8-201ENST00000287546 RUSC2Q8N2Y8 1516 aa10.13□□□□□ -0.79
VPS8-201ENST00000287546 CARMIL1Q5VZK9 1371 aa10.11□□□□□ -0.79
VPS8-201ENST00000287546 ERICH3Q5RHP9 1530 aa10.11□□□□□ -0.79
VPS8-201ENST00000287546 CUX1P39880 1505 aa10.09□□□□□ -0.79
VPS8-201ENST00000287546 FBLN2P98095 1184 aa10.09□□□□□ -0.79
VPS8-201ENST00000287546 RAPGEF2Q9Y4G8 1499 aa10.09□□□□□ -0.79
VPS8-201ENST00000287546 TDRD9Q8NDG6 1382 aaKnown RBP10.09□□□□□ -0.79
VPS8-201ENST00000287546 BIVM-ERCC5R4GMW8 1640 aa10.09□□□□□ -0.79
VPS8-201ENST00000287546 RAD54L2Q9Y4B4 1467 aa10.08□□□□□ -0.8
VPS8-201ENST00000287546 FGD5Q6ZNL6 1462 aa10.07□□□□□ -0.8
VPS8-201ENST00000287546 FHAD1B1AJZ9 1412 aa10.07□□□□□ -0.8
VPS8-201ENST00000287546 URB2Q14146 1524 aaKnown RBP10.06□□□□□ -0.8
VPS8-201ENST00000287546 TOPBP1Q92547 1522 aa10.06□□□□□ -0.8
VPS8-201ENST00000287546 KIF21AQ7Z4S6 1674 aa10.05□□□□□ -0.8
VPS8-201ENST00000287546 ITGAEP38570 1179 aa10.04□□□□□ -0.8
VPS8-201ENST00000287546 MRC2Q9UBG0 1479 aa10.04□□□□□ -0.8
VPS8-201ENST00000287546 CENPBP07199 599 aaPredicted RBP10.03□□□□□ -0.8
VPS8-201ENST00000287546 POLA1P09884 1462 aaPredicted RBP10.02□□□□□ -0.8
VPS8-201ENST00000287546 PRXQ9BXM0 1461 aa10.02□□□□□ -0.81
VPS8-201ENST00000287546 FAM50AQ14320 339 aaKnown RBP10.02□□□□□ -0.81
VPS8-201ENST00000287546 P3H3Q8IVL6 736 aa10.01□□□□□ -0.81
VPS8-201ENST00000287546 DNMBPQ6XZF7 1577 aa10□□□□□ -0.81
VPS8-201ENST00000287546 PRDM2Q13029 1718 aa10□□□□□ -0.81
VPS8-201ENST00000287546 IGF1RP08069 1367 aa9.99□□□□□ -0.81
VPS8-201ENST00000287546 AQRO60306 1485 aaKnown RBP eCLIP9.99□□□□□ -0.815e-6■■■■□ 19.7
Retrieved 100 of 20,778 RNA–protein pairs in 90.1 ms