RNA–Protein interactions for RNA: ENST00000273062.6

CTDSP1-201, Transcript of CTD small phosphatase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CTDSP1, Length 2,638 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTDSP1-201ENST00000273062 NISCHQ9Y2I1 1504 aa31.67■■■□□ 2.66
CTDSP1-201ENST00000273062 CCDC180Q9P1Z9 1646 aa27.1■■□□□ 1.93
CTDSP1-201ENST00000273062 HRCP23327 699 aa26.86■■□□□ 1.89
CTDSP1-201ENST00000273062 SHROOM4Q9ULL8 1493 aa26.78■■□□□ 1.88
CTDSP1-201ENST00000273062 ZCCHC6Q5VYS8 1495 aaKnown RBP26.72■■□□□ 1.87
CTDSP1-201ENST00000273062 PELP1Q8IZL8 1130 aaKnown RBP26.68■■□□□ 1.86
CTDSP1-201ENST00000273062 PPARGC1BQ86YN6 1023 aaKnown RBP26.51■■□□□ 1.83
CTDSP1-201ENST00000273062 DCAF8L2P0C7V8 631 aa26.42■■□□□ 1.82
CTDSP1-201ENST00000273062 PCGF6Q9BYE7 350 aa26.06■■□□□ 1.76
CTDSP1-201ENST00000273062 SUPT5HO00267 1087 aaKnown RBP26.01■■□□□ 1.76
CTDSP1-201ENST00000273062 DCAF1Q9Y4B6 1507 aa25.94■■□□□ 1.74
CTDSP1-201ENST00000273062 SCAF1Q9H7N4 1312 aaKnown RBP25.93■■□□□ 1.74
CTDSP1-201ENST00000273062 MYT1Q01538 1121 aa25.73■■□□□ 1.71
CTDSP1-201ENST00000273062 MYO15BQ96JP2 1530 aa25.61■■□□□ 1.69
CTDSP1-201ENST00000273062 ABCC9O60706 1549 aa25.55■■□□□ 1.68
CTDSP1-201ENST00000273062 SCRIBQ14160 1630 aa25.41■■□□□ 1.66
CTDSP1-201ENST00000273062 NACADO15069 1562 aa25.15■■□□□ 1.62
CTDSP1-201ENST00000273062 CHIC1Q5VXU3 224 aa25.09■■□□□ 1.61
CTDSP1-201ENST00000273062 NEUROD1Q13562 356 aa24.95■■□□□ 1.58
CTDSP1-201ENST00000273062 ACIN1Q9UKV3 1341 aaKnown RBP24.94■■□□□ 1.58
CTDSP1-201ENST00000273062 RSF1Q96T23 1441 aaPredicted RBP24.92■■□□□ 1.58
CTDSP1-201ENST00000273062 TRIM26Q12899 539 aaPredicted RBP24.85■■□□□ 1.57
CTDSP1-201ENST00000273062 GTF3C3Q9Y5Q9 886 aa24.84■■□□□ 1.57
CTDSP1-201ENST00000273062 RB1CC1Q8TDY2 1594 aa24.84■■□□□ 1.57
CTDSP1-201ENST00000273062 CECR2Q9BXF3 1484 aa24.8■■□□□ 1.56
CTDSP1-201ENST00000273062 LOC105371045A0A1W2PR82 267 aa24.73■■□□□ 1.55
CTDSP1-201ENST00000273062 ZEB1P37275 1124 aaPredicted RBP24.73■■□□□ 1.55
CTDSP1-201ENST00000273062 MROH2BQ7Z745 1585 aa24.65■■□□□ 1.54
CTDSP1-201ENST00000273062 UNC13AQ9UPW8 1703 aa24.52■■□□□ 1.52
CTDSP1-201ENST00000273062 WIZO95785 1651 aa24.49■■□□□ 1.51
CTDSP1-201ENST00000273062 BCL11AQ9H165 835 aa24.41■■□□□ 1.5
CTDSP1-201ENST00000273062 CENPBP07199 599 aaPredicted RBP24.37■■□□□ 1.49
CTDSP1-201ENST00000273062 PABPN1Q86U42 306 aaKnown RBP eCLIP24.36■■□□□ 1.493e-6■■□□□ 12.8
CTDSP1-201ENST00000273062 BAZ1AQ9NRL2 1556 aaPredicted RBP24.34■■□□□ 1.49
CTDSP1-201ENST00000273062 TTBK1Q5TCY1 1321 aaPredicted RBP24.31■■□□□ 1.48
CTDSP1-201ENST00000273062 FAM9AQ8IZU1 332 aaPredicted RBP24.29■■□□□ 1.48
CTDSP1-201ENST00000273062 BICRAQ9NZM4 1560 aa24.24■■□□□ 1.47
CTDSP1-201ENST00000273062 SMARCA4P51532 1647 aa24.22■■□□□ 1.47
CTDSP1-201ENST00000273062 TRIM41Q8WV44 630 aa24.22■■□□□ 1.47
CTDSP1-201ENST00000273062 DIEXFQ68CQ4 756 aaKnown RBP24.13■■□□□ 1.45
CTDSP1-201ENST00000273062 TOP2AP11388 1531 aaKnown RBP24.06■■□□□ 1.44
CTDSP1-201ENST00000273062 PRKCSHP14314 528 aaPredicted RBP23.98■■□□□ 1.43
CTDSP1-201ENST00000273062 CCDC88BA6NC98 1476 aa23.98■■□□□ 1.43
CTDSP1-201ENST00000273062 EIF4G1Q04637 1599 aaKnown RBP23.97■■□□□ 1.43
CTDSP1-201ENST00000273062 YTHDC1Q96MU7 727 aaKnown RBP23.97■■□□□ 1.43
CTDSP1-201ENST00000273062 SMARCA2P51531 1590 aa23.94■■□□□ 1.42
CTDSP1-201ENST00000273062 EHMT2Q96KQ7 1210 aa23.93■■□□□ 1.42
CTDSP1-201ENST00000273062 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.93■■□□□ 1.42
CTDSP1-201ENST00000273062 ANP32EQ9BTT0 268 aa23.86■■□□□ 1.41
CTDSP1-201ENST00000273062 ABCC8Q09428 1581 aa23.82■■□□□ 1.4
CTDSP1-201ENST00000273062 CCER1Q8TC90 406 aaPredicted RBP23.77■■□□□ 1.4
CTDSP1-201ENST00000273062 CSRNP3Q8WYN3 585 aa23.77■■□□□ 1.4
CTDSP1-201ENST00000273062 PEG3Q9GZU2 1588 aa23.75■■□□□ 1.39
CTDSP1-201ENST00000273062 ATAD2BQ9ULI0 1458 aa23.71■■□□□ 1.39
CTDSP1-201ENST00000273062 BAZ1BQ9UIG0 1483 aaKnown RBP23.61■■□□□ 1.37
CTDSP1-201ENST00000273062 TSHZ2Q9NRE2 1034 aa23.56■■□□□ 1.36
CTDSP1-201ENST00000273062 MIER1Q8N108 512 aa23.53■■□□□ 1.36
CTDSP1-201ENST00000273062 SOGA1O94964 1423 aa23.49■■□□□ 1.35
CTDSP1-201ENST00000273062 SUPT16HQ9Y5B9 1047 aaKnown RBP23.46■■□□□ 1.35
CTDSP1-201ENST00000273062 ZNF316A6NFI3 1004 aaPredicted RBP23.44■■□□□ 1.34
CTDSP1-201ENST00000273062 RUSC2Q8N2Y8 1516 aa23.42■■□□□ 1.34
CTDSP1-201ENST00000273062 WRNQ14191 1432 aaPredicted RBP eCLIP23.41■■□□□ 1.34
CTDSP1-201ENST00000273062 SYNJ1O43426 1573 aa23.35■■□□□ 1.33
CTDSP1-201ENST00000273062 NCAPD3P42695 1498 aa23.29■■□□□ 1.32
CTDSP1-201ENST00000273062 HMGXB3Q12766 1538 aa23.25■■□□□ 1.31
CTDSP1-201ENST00000273062 EEA1Q15075 1411 aa23.17■■□□□ 1.3
CTDSP1-201ENST00000273062 CEP162Q5TB80 1403 aa23.14■■□□□ 1.3
CTDSP1-201ENST00000273062 UBTFP17480 764 aaKnown RBP23.13■■□□□ 1.29
CTDSP1-201ENST00000273062 TNIKQ9UKE5 1360 aa23.09■■□□□ 1.29
CTDSP1-201ENST00000273062 ERICH6Q7L0X2 663 aa23.07■■□□□ 1.28
CTDSP1-201ENST00000273062 TOP2BQ02880 1626 aa23.06■■□□□ 1.28
CTDSP1-201ENST00000273062 GOLGA3Q08378 1498 aa23.05■■□□□ 1.28
CTDSP1-201ENST00000273062 CLSPNQ9HAW4 1339 aa23.03■■□□□ 1.28
CTDSP1-201ENST00000273062 CFTRP13569 1480 aa23■■□□□ 1.27
CTDSP1-201ENST00000273062 CC2D2AQ9P2K1 1620 aa22.98■■□□□ 1.27
CTDSP1-201ENST00000273062 APLP2Q06481 763 aa22.98■■□□□ 1.27
CTDSP1-201ENST00000273062 BIVM-ERCC5R4GMW8 1640 aa22.97■■□□□ 1.27
CTDSP1-201ENST00000273062 CUX1P39880 1505 aa22.97■■□□□ 1.27
CTDSP1-201ENST00000273062 BCANQ96GW7 911 aa22.96■■□□□ 1.27
CTDSP1-201ENST00000273062 CEP164Q9UPV0 1460 aa22.96■■□□□ 1.27
CTDSP1-201ENST00000273062 KIF21BO75037 1637 aa22.93■■□□□ 1.26
CTDSP1-201ENST00000273062 RAPGEF2Q9Y4G8 1499 aa22.93■■□□□ 1.26
CTDSP1-201ENST00000273062 ANO8Q9HCE9 1232 aaPredicted RBP22.91■■□□□ 1.26
CTDSP1-201ENST00000273062 RBM19Q9Y4C8 960 aaKnown RBP22.91■■□□□ 1.26
CTDSP1-201ENST00000273062 MSH5O43196 834 aa22.88■■□□□ 1.25
CTDSP1-201ENST00000273062 RANGAP1P46060 587 aaPredicted RBP22.88■■□□□ 1.25
CTDSP1-201ENST00000273062 CADPSQ9ULU8 1353 aa22.82■■□□□ 1.24
CTDSP1-201ENST00000273062 CLIP1P30622 1438 aa22.79■■□□□ 1.24
CTDSP1-201ENST00000273062 PRDM2Q13029 1718 aa22.76■■□□□ 1.23
CTDSP1-201ENST00000273062 PRXQ9BXM0 1461 aa22.72■■□□□ 1.23
CTDSP1-201ENST00000273062 KIF27Q86VH2 1401 aa22.69■■□□□ 1.22
CTDSP1-201ENST00000273062 FKBP8Q14318 412 aa22.67■■□□□ 1.22
CTDSP1-201ENST00000273062 NESP48681 1621 aa22.66■■□□□ 1.22
CTDSP1-201ENST00000273062 DNAJC5BQ9UF47 199 aa22.63■■□□□ 1.21
CTDSP1-201ENST00000273062 ERICH3Q5RHP9 1530 aa22.63■■□□□ 1.21
CTDSP1-201ENST00000273062 VPS8Q8N3P4 1428 aa22.62■■□□□ 1.21
CTDSP1-201ENST00000273062 FANCD2Q9BXW9 1451 aa22.62■■□□□ 1.21
CTDSP1-201ENST00000273062 ITGAEP38570 1179 aa22.62■■□□□ 1.21
CTDSP1-201ENST00000273062 FGD5Q6ZNL6 1462 aa22.62■■□□□ 1.21
CTDSP1-201ENST00000273062 CUX2O14529 1486 aa22.61■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms