RNA–Protein interactions for RNA: ENST00000265896.9

SQLE-201, Transcript of squalene epoxidase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SQLE, Length 2,961 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQLE-201ENST00000265896 NISCHQ9Y2I1 1504 aa33.36■■■□□ 2.93
SQLE-201ENST00000265896 SHROOM4Q9ULL8 1493 aa29.83■■■□□ 2.37
SQLE-201ENST00000265896 SUPT5HO00267 1087 aaKnown RBP29.39■■■□□ 2.29
SQLE-201ENST00000265896 DCAF8L2P0C7V8 631 aa28.93■■■□□ 2.22
SQLE-201ENST00000265896 MYO15BQ96JP2 1530 aa28.23■■■□□ 2.11
SQLE-201ENST00000265896 CHIC1Q5VXU3 224 aa28.23■■■□□ 2.11
SQLE-201ENST00000265896 ZCCHC6Q5VYS8 1495 aaKnown RBP28.17■■■□□ 2.1
SQLE-201ENST00000265896 PCGF6Q9BYE7 350 aa28.1■■■□□ 2.09
SQLE-201ENST00000265896 LOC105371045A0A1W2PR82 267 aa27.88■■■□□ 2.05
SQLE-201ENST00000265896 PPARGC1BQ86YN6 1023 aaKnown RBP27.87■■■□□ 2.05
SQLE-201ENST00000265896 HRCP23327 699 aa27.84■■■□□ 2.05
SQLE-201ENST00000265896 CCDC180Q9P1Z9 1646 aa27.65■■■□□ 2.02
SQLE-201ENST00000265896 EHMT2Q96KQ7 1210 aa27.54■■■□□ 2
SQLE-201ENST00000265896 FAM9AQ8IZU1 332 aaPredicted RBP27.34■■□□□ 1.97
SQLE-201ENST00000265896 TRIM41Q8WV44 630 aa26.99■■□□□ 1.91
SQLE-201ENST00000265896 TRIM26Q12899 539 aaPredicted RBP26.97■■□□□ 1.91
SQLE-201ENST00000265896 DCAF1Q9Y4B6 1507 aa26.93■■□□□ 1.9
SQLE-201ENST00000265896 SCRIBQ14160 1630 aa26.86■■□□□ 1.89
SQLE-201ENST00000265896 RSF1Q96T23 1441 aaPredicted RBP26.75■■□□□ 1.87
SQLE-201ENST00000265896 TTBK1Q5TCY1 1321 aaPredicted RBP26.63■■□□□ 1.85
SQLE-201ENST00000265896 ABCC9O60706 1549 aa26.6■■□□□ 1.85
SQLE-201ENST00000265896 RB1CC1Q8TDY2 1594 aa26.57■■□□□ 1.84
SQLE-201ENST00000265896 CECR2Q9BXF3 1484 aa26.45■■□□□ 1.82
SQLE-201ENST00000265896 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP26.35■■□□□ 1.81
SQLE-201ENST00000265896 ZEB1P37275 1124 aaPredicted RBP26.22■■□□□ 1.79
SQLE-201ENST00000265896 MROH2BQ7Z745 1585 aa26.21■■□□□ 1.79
SQLE-201ENST00000265896 CCER1Q8TC90 406 aaPredicted RBP26.13■■□□□ 1.77
SQLE-201ENST00000265896 SCAF1Q9H7N4 1312 aaKnown RBP26.1■■□□□ 1.77
SQLE-201ENST00000265896 WIZO95785 1651 aa26.07■■□□□ 1.76
SQLE-201ENST00000265896 ABCC8Q09428 1581 aa25.84■■□□□ 1.73
SQLE-201ENST00000265896 RANGAP1P46060 587 aaPredicted RBP25.83■■□□□ 1.73
SQLE-201ENST00000265896 UBTFP17480 764 aaKnown RBP25.82■■□□□ 1.72
SQLE-201ENST00000265896 PABPN1Q86U42 306 aaKnown RBP eCLIP25.79■■□□□ 1.72
SQLE-201ENST00000265896 CCDC88BA6NC98 1476 aa25.76■■□□□ 1.71
SQLE-201ENST00000265896 NACADO15069 1562 aa25.73■■□□□ 1.71
SQLE-201ENST00000265896 NEUROD1Q13562 356 aa25.73■■□□□ 1.71
SQLE-201ENST00000265896 SOGA1O94964 1423 aa25.71■■□□□ 1.71
SQLE-201ENST00000265896 DIEXFQ68CQ4 756 aaKnown RBP25.67■■□□□ 1.7
SQLE-201ENST00000265896 RUSC2Q8N2Y8 1516 aa25.62■■□□□ 1.69
SQLE-201ENST00000265896 YTHDC1Q96MU7 727 aaKnown RBP25.6■■□□□ 1.69
SQLE-201ENST00000265896 HNRNPUL2Q1KMD3 747 aaKnown RBP25.6■■□□□ 1.69
SQLE-201ENST00000265896 CEP162Q5TB80 1403 aa25.57■■□□□ 1.68
SQLE-201ENST00000265896 ACIN1Q9UKV3 1341 aaKnown RBP25.55■■□□□ 1.68
SQLE-201ENST00000265896 BAZ1AQ9NRL2 1556 aaPredicted RBP25.54■■□□□ 1.68
SQLE-201ENST00000265896 GTF3C3Q9Y5Q9 886 aa25.53■■□□□ 1.68
SQLE-201ENST00000265896 CSRNP3Q8WYN3 585 aa25.52■■□□□ 1.68
SQLE-201ENST00000265896 EIF4G1Q04637 1599 aaKnown RBP25.4■■□□□ 1.66
SQLE-201ENST00000265896 TOP2AP11388 1531 aaKnown RBP25.33■■□□□ 1.65
SQLE-201ENST00000265896 SMARCA2P51531 1590 aa25.33■■□□□ 1.64
SQLE-201ENST00000265896 SMARCA4P51532 1647 aa25.29■■□□□ 1.64
SQLE-201ENST00000265896 TNIKQ9UKE5 1360 aa25.28■■□□□ 1.64
SQLE-201ENST00000265896 CENPBP07199 599 aaPredicted RBP25.27■■□□□ 1.64
SQLE-201ENST00000265896 ZNF316A6NFI3 1004 aaPredicted RBP25.23■■□□□ 1.63
SQLE-201ENST00000265896 PELP1Q8IZL8 1130 aaKnown RBP25.22■■□□□ 1.63
SQLE-201ENST00000265896 WRNQ14191 1432 aaPredicted RBP eCLIP25.2■■□□□ 1.62
SQLE-201ENST00000265896 MIER1Q8N108 512 aa25.19■■□□□ 1.62
SQLE-201ENST00000265896 APLP2Q06481 763 aa25.14■■□□□ 1.62
SQLE-201ENST00000265896 GOLGA3Q08378 1498 aa25.09■■□□□ 1.61
SQLE-201ENST00000265896 CLIP1P30622 1438 aa25.03■■□□□ 1.6
SQLE-201ENST00000265896 UNC13AQ9UPW8 1703 aa25.02■■□□□ 1.6
SQLE-201ENST00000265896 ITGAEP38570 1179 aa24.99■■□□□ 1.59
SQLE-201ENST00000265896 SYNJ1O43426 1573 aa24.95■■□□□ 1.58
SQLE-201ENST00000265896 RAPGEF2Q9Y4G8 1499 aa24.95■■□□□ 1.58
SQLE-201ENST00000265896 EEA1Q15075 1411 aa24.93■■□□□ 1.58
SQLE-201ENST00000265896 CEP164Q9UPV0 1460 aa24.86■■□□□ 1.57
SQLE-201ENST00000265896 KANK4Q5T7N3 995 aaPredicted RBP24.86■■□□□ 1.57
SQLE-201ENST00000265896 BICRAQ9NZM4 1560 aa24.81■■□□□ 1.56
SQLE-201ENST00000265896 VPS8Q8N3P4 1428 aa24.79■■□□□ 1.56
SQLE-201ENST00000265896 BAZ1BQ9UIG0 1483 aaKnown RBP24.75■■□□□ 1.55
SQLE-201ENST00000265896 ATAD2BQ9ULI0 1458 aa24.73■■□□□ 1.55
SQLE-201ENST00000265896 KIF21BO75037 1637 aa24.65■■□□□ 1.54
SQLE-201ENST00000265896 ATP1B4Q9UN42 357 aaPredicted RBP24.61■■□□□ 1.53
SQLE-201ENST00000265896 KCNH8Q96L42 1107 aa24.57■■□□□ 1.52
SQLE-201ENST00000265896 DHX57Q6P158 1386 aaKnown RBP24.56■■□□□ 1.52
SQLE-201ENST00000265896 P3H3Q8IVL6 736 aa24.55■■□□□ 1.52
SQLE-201ENST00000265896 HIRIP3Q9BW71 556 aaPredicted RBP24.49■■□□□ 1.51
SQLE-201ENST00000265896 ARAP1Q96P48 1450 aa24.48■■□□□ 1.51
SQLE-201ENST00000265896 PEG3Q9GZU2 1588 aa24.43■■□□□ 1.5
SQLE-201ENST00000265896 BCANQ96GW7 911 aa24.4■■□□□ 1.5
SQLE-201ENST00000265896 FAM50AQ14320 339 aaKnown RBP24.4■■□□□ 1.5
SQLE-201ENST00000265896 SIN3AQ96ST3 1273 aa24.38■■□□□ 1.49
SQLE-201ENST00000265896 TOP2BQ02880 1626 aa24.35■■□□□ 1.49
SQLE-201ENST00000265896 SUPT16HQ9Y5B9 1047 aaKnown RBP24.34■■□□□ 1.49
SQLE-201ENST00000265896 PRXQ9BXM0 1461 aa24.33■■□□□ 1.49
SQLE-201ENST00000265896 DDX10Q13206 875 aaKnown RBP24.3■■□□□ 1.48
SQLE-201ENST00000265896 CUX1P39880 1505 aa24.3■■□□□ 1.48
SQLE-201ENST00000265896 CCNB3Q8WWL7 1395 aa24.29■■□□□ 1.48
SQLE-201ENST00000265896 KIF27Q86VH2 1401 aa24.27■■□□□ 1.48
SQLE-201ENST00000265896 RAB3GAP2Q9H2M9 1393 aa24.24■■□□□ 1.47
SQLE-201ENST00000265896 ARHGAP35Q9NRY4 1499 aa24.22■■□□□ 1.47
SQLE-201ENST00000265896 CUX2O14529 1486 aa24.17■■□□□ 1.46
SQLE-201ENST00000265896 CLSPNQ9HAW4 1339 aa24.14■■□□□ 1.46
SQLE-201ENST00000265896 RRBP1Q9P2E9 1410 aaKnown RBP24.14■■□□□ 1.45
SQLE-201ENST00000265896 TRIM52Q96A61 297 aa24.12■■□□□ 1.45
SQLE-201ENST00000265896 ERICH3Q5RHP9 1530 aa24.11■■□□□ 1.45
SQLE-201ENST00000265896 IGF1RP08069 1367 aa24.1■■□□□ 1.45
SQLE-201ENST00000265896 BIVM-ERCC5R4GMW8 1640 aa24.09■■□□□ 1.45
SQLE-201ENST00000265896 PHLDB1Q86UU1 1377 aa24.09■■□□□ 1.45
SQLE-201ENST00000265896 FKBP8Q14318 412 aa24.05■■□□□ 1.44
SQLE-201ENST00000265896 CARMIL1Q5VZK9 1371 aa24.04■■□□□ 1.44
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms