RNA–Protein interactions for RNA: ENST00000262150.6

CDH19-201, Transcript of cadherin 19, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDH19, Length 6,341 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH19-201ENST00000262150 NISCHQ9Y2I1 1504 aa10.44□□□□□ -0.74
CDH19-201ENST00000262150 DCAF8L2P0C7V8 631 aa10.14□□□□□ -0.79
CDH19-201ENST00000262150 SHROOM4Q9ULL8 1493 aa9.41□□□□□ -0.9
CDH19-201ENST00000262150 SUPT5HO00267 1087 aaKnown RBP9.28□□□□□ -0.92
CDH19-201ENST00000262150 ABCC9O60706 1549 aa9.19□□□□□ -0.94
CDH19-201ENST00000262150 PABPN1Q86U42 306 aaKnown RBP eCLIP8.94□□□□□ -0.98
CDH19-201ENST00000262150 EHMT2Q96KQ7 1210 aa8.84□□□□□ -0.99
CDH19-201ENST00000262150 CCDC180Q9P1Z9 1646 aa8.82□□□□□ -1
CDH19-201ENST00000262150 FAM9AQ8IZU1 332 aaPredicted RBP8.71□□□□□ -1.01
CDH19-201ENST00000262150 TRIM41Q8WV44 630 aa8.65□□□□□ -1.03
CDH19-201ENST00000262150 ZCCHC6Q5VYS8 1495 aaKnown RBP8.64□□□□□ -1.03
CDH19-201ENST00000262150 SCRIBQ14160 1630 aa8.63□□□□□ -1.03
CDH19-201ENST00000262150 RB1CC1Q8TDY2 1594 aa8.62□□□□□ -1.03
CDH19-201ENST00000262150 RANGAP1P46060 587 aaPredicted RBP8.61□□□□□ -1.03
CDH19-201ENST00000262150 APLP2Q06481 763 aa8.57□□□□□ -1.04
CDH19-201ENST00000262150 NACADO15069 1562 aa8.53□□□□□ -1.04
CDH19-201ENST00000262150 ATP1B4Q9UN42 357 aaPredicted RBP8.51□□□□□ -1.05
CDH19-201ENST00000262150 UBTFP17480 764 aaKnown RBP8.5□□□□□ -1.05
CDH19-201ENST00000262150 TTBK1Q5TCY1 1321 aaPredicted RBP8.46□□□□□ -1.06
CDH19-201ENST00000262150 FBLN2P98095 1184 aa8.37□□□□□ -1.07
CDH19-201ENST00000262150 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP8.35□□□□□ -1.07
CDH19-201ENST00000262150 HNRNPUL2Q1KMD3 747 aaKnown RBP8.35□□□□□ -1.07
CDH19-201ENST00000262150 DCAF1Q9Y4B6 1507 aa8.34□□□□□ -1.08
CDH19-201ENST00000262150 CHIC1Q5VXU3 224 aa8.3□□□□□ -1.08
CDH19-201ENST00000262150 MYT1LQ9UL68 1186 aa8.25□□□□□ -1.09
CDH19-201ENST00000262150 BAZ1BQ9UIG0 1483 aaKnown RBP8.25□□□□□ -1.09
CDH19-201ENST00000262150 MYO15BQ96JP2 1530 aa8.21□□□□□ -1.09
CDH19-201ENST00000262150 CECR2Q9BXF3 1484 aa8.21□□□□□ -1.1
CDH19-201ENST00000262150 RSF1Q96T23 1441 aaPredicted RBP8.2□□□□□ -1.1
CDH19-201ENST00000262150 ERCC6Q03468 1493 aa8.2□□□□□ -1.1
CDH19-201ENST00000262150 LOC105371045A0A1W2PR82 267 aa8.19□□□□□ -1.1
CDH19-201ENST00000262150 PPARGC1BQ86YN6 1023 aaKnown RBP8.19□□□□□ -1.1
CDH19-201ENST00000262150 BAZ1AQ9NRL2 1556 aaPredicted RBP8.19□□□□□ -1.1
CDH19-201ENST00000262150 P3H3Q8IVL6 736 aa8.12□□□□□ -1.11
CDH19-201ENST00000262150 ITGAEP38570 1179 aa8.12□□□□□ -1.11
CDH19-201ENST00000262150 CHMP7Q8WUX9 453 aaPredicted RBP8.11□□□□□ -1.11
CDH19-201ENST00000262150 PCGF6Q9BYE7 350 aa8.11□□□□□ -1.11
CDH19-201ENST00000262150 CSRNP3Q8WYN3 585 aa8.11□□□□□ -1.11
CDH19-201ENST00000262150 ARID3CA6NKF2 412 aa8.11□□□□□ -1.11
CDH19-201ENST00000262150 SMARCA2P51531 1590 aa8.09□□□□□ -1.11
CDH19-201ENST00000262150 MROH2BQ7Z745 1585 aa8.08□□□□□ -1.12
CDH19-201ENST00000262150 NPM1P06748 294 aaKnown RBP eCLIP8.06□□□□□ -1.12
CDH19-201ENST00000262150 PDS5BQ9NTI5 1447 aa8.03□□□□□ -1.12
CDH19-201ENST00000262150 CCER1Q8TC90 406 aaPredicted RBP8.02□□□□□ -1.13
CDH19-201ENST00000262150 ATAD2BQ9ULI0 1458 aa8.01□□□□□ -1.13
CDH19-201ENST00000262150 WRNQ14191 1432 aaPredicted RBP eCLIP8.01□□□□□ -1.13
CDH19-201ENST00000262150 FAM50AQ14320 339 aaKnown RBP8□□□□□ -1.13
CDH19-201ENST00000262150 CCDC88BA6NC98 1476 aa7.98□□□□□ -1.13
CDH19-201ENST00000262150 SMARCA4P51532 1647 aa7.97□□□□□ -1.13
CDH19-201ENST00000262150 CDK11AQ9UQ88 783 aaPredicted RBP7.97□□□□□ -1.13
CDH19-201ENST00000262150 CADPSQ9ULU8 1353 aa7.97□□□□□ -1.13
CDH19-201ENST00000262150 EIF4G1Q04637 1599 aaKnown RBP7.96□□□□□ -1.13
CDH19-201ENST00000262150 WIZO95785 1651 aa7.96□□□□□ -1.14
CDH19-201ENST00000262150 ZNF777Q9ULD5 760 aaPredicted RBP7.95□□□□□ -1.14
CDH19-201ENST00000262150 TOP2AP11388 1531 aaKnown RBP7.93□□□□□ -1.14
CDH19-201ENST00000262150 KIF27Q86VH2 1401 aa7.93□□□□□ -1.14
CDH19-201ENST00000262150 DNAJC5BQ9UF47 199 aa7.92□□□□□ -1.14
CDH19-201ENST00000262150 TRIM26Q12899 539 aaPredicted RBP7.91□□□□□ -1.14
CDH19-201ENST00000262150 TRIM52Q96A61 297 aa7.91□□□□□ -1.14
CDH19-201ENST00000262150 CEP164Q9UPV0 1460 aa7.9□□□□□ -1.15
CDH19-201ENST00000262150 CUX2O14529 1486 aa7.89□□□□□ -1.15
CDH19-201ENST00000262150 CC2D2AQ9P2K1 1620 aa7.89□□□□□ -1.15
CDH19-201ENST00000262150 NCAPD3P42695 1498 aa7.89□□□□□ -1.15
CDH19-201ENST00000262150 SOGA1O94964 1423 aa7.89□□□□□ -1.15
CDH19-201ENST00000262150 TDRD9Q8NDG6 1382 aaKnown RBP7.89□□□□□ -1.15
CDH19-201ENST00000262150 KCNH8Q96L42 1107 aa7.88□□□□□ -1.15
CDH19-201ENST00000262150 FANCD2Q9BXW9 1451 aa7.87□□□□□ -1.15
CDH19-201ENST00000262150 ESF1Q9H501 851 aaKnown RBP7.87□□□□□ -1.15
CDH19-201ENST00000262150 PLPPR3Q6T4P5 718 aa7.86□□□□□ -1.15
CDH19-201ENST00000262150 TRHP20396 242 aaPredicted RBP7.85□□□□□ -1.15
CDH19-201ENST00000262150 EEA1Q15075 1411 aa7.84□□□□□ -1.15
CDH19-201ENST00000262150 BICRAQ9NZM4 1560 aa7.84□□□□□ -1.15
CDH19-201ENST00000262150 CARMIL1Q5VZK9 1371 aa7.83□□□□□ -1.16
CDH19-201ENST00000262150 ABCC8Q09428 1581 aa7.83□□□□□ -1.16
CDH19-201ENST00000262150 ZEB1P37275 1124 aaPredicted RBP7.83□□□□□ -1.16
CDH19-201ENST00000262150 PLEKHD1A6NEE1 506 aa7.82□□□□□ -1.16
CDH19-201ENST00000262150 POLR3GLQ9BT43 218 aa7.82□□□□□ -1.16
CDH19-201ENST00000262150 CLIP1P30622 1438 aa7.81□□□□□ -1.16
CDH19-201ENST00000262150 GOLGA3Q08378 1498 aa7.8□□□□□ -1.16
CDH19-201ENST00000262150 MTUS2Q5JR59 1369 aa7.8□□□□□ -1.16
CDH19-201ENST00000262150 BCANQ96GW7 911 aa7.8□□□□□ -1.16
CDH19-201ENST00000262150 NESP48681 1621 aa7.79□□□□□ -1.16
CDH19-201ENST00000262150 OSCARQ8IYS5 282 aa7.77□□□□□ -1.17
CDH19-201ENST00000262150 SLC4A1APQ9BWU0 796 aaKnown RBP7.76□□□□□ -1.17
CDH19-201ENST00000262150 TSPY4P0CV99 314 aa7.76□□□□□ -1.17
CDH19-201ENST00000262150 TSPY10P0CW01 314 aa7.76□□□□□ -1.17
CDH19-201ENST00000262150 NEUROD1Q13562 356 aa7.75□□□□□ -1.17
CDH19-201ENST00000262150 CHIC2Q9UKJ5 165 aa7.75□□□□□ -1.17
CDH19-201ENST00000262150 ZNF326Q5BKZ1 582 aaKnown RBP7.75□□□□□ -1.17
CDH19-201ENST00000262150 HMGXB3Q12766 1538 aa7.75□□□□□ -1.17
CDH19-201ENST00000262150 STAG3Q9UJ98 1225 aa7.74□□□□□ -1.17
CDH19-201ENST00000262150 CARMIL2Q6F5E8 1435 aa7.74□□□□□ -1.17
CDH19-201ENST00000262150 GRWD1Q9BQ67 446 aaKnown RBP eCLIP7.74□□□□□ -1.17
CDH19-201ENST00000262150 ARID4BQ4LE39 1312 aaPredicted RBP7.74□□□□□ -1.17
CDH19-201ENST00000262150 CHGAP10645 457 aaKnown RBP7.73□□□□□ -1.17
CDH19-201ENST00000262150 CYB5RLQ6IPT4 315 aa7.72□□□□□ -1.17
CDH19-201ENST00000262150 CEP162Q5TB80 1403 aa7.72□□□□□ -1.17
CDH19-201ENST00000262150 RAD54L2Q9Y4B4 1467 aa7.71□□□□□ -1.17
CDH19-201ENST00000262150 FGD5Q6ZNL6 1462 aa7.71□□□□□ -1.17
CDH19-201ENST00000262150 MRC2Q9UBG0 1479 aa7.71□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms