RNA–Protein interactions for RNA: ENST00000261963.11

MCF2L-201, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 1 (best)

Gene MCF2L, Length 2,419 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-201ENST00000261963 NISCHQ9Y2I1 1504 aa47.64■■■■■ 5.22
MCF2L-201ENST00000261963 CCDC180Q9P1Z9 1646 aa40.69■■■■■ 4.1
MCF2L-201ENST00000261963 ZCCHC6Q5VYS8 1495 aaKnown RBP40.27■■■■■ 4.04
MCF2L-201ENST00000261963 SHROOM4Q9ULL8 1493 aa40.15■■■■■ 4.02
MCF2L-201ENST00000261963 DCAF8L2P0C7V8 631 aa39.26■■■■□ 3.88
MCF2L-201ENST00000261963 SUPT5HO00267 1087 aaKnown RBP39.23■■■■□ 3.87
MCF2L-201ENST00000261963 DCAF1Q9Y4B6 1507 aa39.2■■■■□ 3.87
MCF2L-201ENST00000261963 MYO15BQ96JP2 1530 aa38.2■■■■□ 3.7
MCF2L-201ENST00000261963 CHIC1Q5VXU3 224 aa38.14■■■■□ 3.7
MCF2L-201ENST00000261963 SCRIBQ14160 1630 aa37.94■■■■□ 3.66
MCF2L-201ENST00000261963 ABCC9O60706 1549 aa37.92■■■■□ 3.66
MCF2L-201ENST00000261963 NACADO15069 1562 aa37.67■■■■□ 3.62
MCF2L-201ENST00000261963 RSF1Q96T23 1441 aaPredicted RBP37.56■■■■□ 3.6
MCF2L-201ENST00000261963 HRCP23327 699 aa37.22■■■■□ 3.55
MCF2L-201ENST00000261963 CECR2Q9BXF3 1484 aa37.12■■■■□ 3.53
MCF2L-201ENST00000261963 RB1CC1Q8TDY2 1594 aa37.11■■■■□ 3.53
MCF2L-201ENST00000261963 MROH2BQ7Z745 1585 aa36.98■■■■□ 3.51
MCF2L-201ENST00000261963 LOC105371045A0A1W2PR82 267 aa36.9■■■■□ 3.5
MCF2L-201ENST00000261963 WIZO95785 1651 aa36.73■■■■□ 3.47
MCF2L-201ENST00000261963 TRIM41Q8WV44 630 aa36.63■■■■□ 3.45
MCF2L-201ENST00000261963 BAZ1AQ9NRL2 1556 aaPredicted RBP36.6■■■■□ 3.45
MCF2L-201ENST00000261963 PCGF6Q9BYE7 350 aa36.52■■■■□ 3.44
MCF2L-201ENST00000261963 UNC13AQ9UPW8 1703 aa36.49■■■■□ 3.43
MCF2L-201ENST00000261963 SMARCA4P51532 1647 aa36.33■■■■□ 3.41
MCF2L-201ENST00000261963 PPARGC1BQ86YN6 1023 aaKnown RBP36.27■■■■□ 3.4
MCF2L-201ENST00000261963 EIF4G1Q04637 1599 aaKnown RBP36.24■■■■□ 3.39
MCF2L-201ENST00000261963 TOP2AP11388 1531 aaKnown RBP36.23■■■■□ 3.39
MCF2L-201ENST00000261963 FAM9AQ8IZU1 332 aaPredicted RBP36.22■■■■□ 3.39
MCF2L-201ENST00000261963 BICRAQ9NZM4 1560 aa36.11■■■■□ 3.37
MCF2L-201ENST00000261963 CCDC88BA6NC98 1476 aa36.03■■■■□ 3.36
MCF2L-201ENST00000261963 PABPN1Q86U42 306 aaKnown RBP eCLIP36.01■■■■□ 3.361e-6■■■□□ 18.4
MCF2L-201ENST00000261963 SMARCA2P51531 1590 aa36.01■■■■□ 3.35
MCF2L-201ENST00000261963 TRIM26Q12899 539 aaPredicted RBP35.99■■■■□ 3.35
MCF2L-201ENST00000261963 PELP1Q8IZL8 1130 aaKnown RBP35.88■■■■□ 3.33
MCF2L-201ENST00000261963 EHMT2Q96KQ7 1210 aa35.82■■■■□ 3.32
MCF2L-201ENST00000261963 ABCC8Q09428 1581 aa35.77■■■■□ 3.32
MCF2L-201ENST00000261963 PEG3Q9GZU2 1588 aa35.73■■■■□ 3.31
MCF2L-201ENST00000261963 ATAD2BQ9ULI0 1458 aa35.47■■■■□ 3.27
MCF2L-201ENST00000261963 SOGA1O94964 1423 aa35.4■■■■□ 3.26
MCF2L-201ENST00000261963 BAZ1BQ9UIG0 1483 aaKnown RBP35.32■■■■□ 3.24
MCF2L-201ENST00000261963 WRNQ14191 1432 aaPredicted RBP eCLIP35.26■■■■□ 3.24
MCF2L-201ENST00000261963 EEA1Q15075 1411 aa35.26■■■■□ 3.24
MCF2L-201ENST00000261963 RUSC2Q8N2Y8 1516 aa35.24■■■■□ 3.23
MCF2L-201ENST00000261963 ZEB1P37275 1124 aaPredicted RBP35.2■■■■□ 3.22
MCF2L-201ENST00000261963 CSRNP3Q8WYN3 585 aa35.17■■■■□ 3.22
MCF2L-201ENST00000261963 TNIKQ9UKE5 1360 aa35.13■■■■□ 3.21
MCF2L-201ENST00000261963 SYNJ1O43426 1573 aa35.11■■■■□ 3.21
MCF2L-201ENST00000261963 CEP162Q5TB80 1403 aa35.11■■■■□ 3.21
MCF2L-201ENST00000261963 SCAF1Q9H7N4 1312 aaKnown RBP35.07■■■■□ 3.2
MCF2L-201ENST00000261963 GOLGA3Q08378 1498 aa34.96■■■■□ 3.19
MCF2L-201ENST00000261963 UBTFP17480 764 aaKnown RBP34.9■■■■□ 3.18
MCF2L-201ENST00000261963 NCAPD3P42695 1498 aa34.87■■■■□ 3.17
MCF2L-201ENST00000261963 HMGXB3Q12766 1538 aa34.85■■■■□ 3.17
MCF2L-201ENST00000261963 CEP164Q9UPV0 1460 aa34.81■■■■□ 3.16
MCF2L-201ENST00000261963 KIF21BO75037 1637 aa34.79■■■■□ 3.16
MCF2L-201ENST00000261963 TOP2BQ02880 1626 aa34.75■■■■□ 3.15
MCF2L-201ENST00000261963 BIVM-ERCC5R4GMW8 1640 aa34.64■■■■□ 3.14
MCF2L-201ENST00000261963 TTBK1Q5TCY1 1321 aaPredicted RBP34.61■■■■□ 3.13
MCF2L-201ENST00000261963 RAPGEF2Q9Y4G8 1499 aa34.57■■■■□ 3.13
MCF2L-201ENST00000261963 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP34.55■■■■□ 3.12
MCF2L-201ENST00000261963 CLIP1P30622 1438 aa34.52■■■■□ 3.12
MCF2L-201ENST00000261963 MYT1Q01538 1121 aa34.51■■■■□ 3.12
MCF2L-201ENST00000261963 CFTRP13569 1480 aa34.5■■■■□ 3.11
MCF2L-201ENST00000261963 CUX1P39880 1505 aa34.46■■■■□ 3.11
MCF2L-201ENST00000261963 CCER1Q8TC90 406 aaPredicted RBP34.43■■■■□ 3.1
MCF2L-201ENST00000261963 VPS8Q8N3P4 1428 aa34.37■■■■□ 3.09
MCF2L-201ENST00000261963 PRXQ9BXM0 1461 aa34.35■■■■□ 3.09
MCF2L-201ENST00000261963 ACIN1Q9UKV3 1341 aaKnown RBP34.33■■■■□ 3.09
MCF2L-201ENST00000261963 ERICH3Q5RHP9 1530 aa34.3■■■■□ 3.08
MCF2L-201ENST00000261963 KIF27Q86VH2 1401 aa34.2■■■■□ 3.07
MCF2L-201ENST00000261963 PRDM2Q13029 1718 aa34.17■■■■□ 3.06
MCF2L-201ENST00000261963 RANGAP1P46060 587 aaPredicted RBP34.16■■■■□ 3.06
MCF2L-201ENST00000261963 NEUROD1Q13562 356 aa34.15■■■■□ 3.06
MCF2L-201ENST00000261963 CADPSQ9ULU8 1353 aa34.13■■■■□ 3.05
MCF2L-201ENST00000261963 CC2D2AQ9P2K1 1620 aa34.06■■■■□ 3.04
MCF2L-201ENST00000261963 ARAP1Q96P48 1450 aa34.05■■■■□ 3.04
MCF2L-201ENST00000261963 APLP2Q06481 763 aa34.04■■■■□ 3.04
MCF2L-201ENST00000261963 GTF3C3Q9Y5Q9 886 aa33.98■■■■□ 3.03
MCF2L-201ENST00000261963 CENPBP07199 599 aaPredicted RBP33.98■■■■□ 3.03
MCF2L-201ENST00000261963 HNRNPUL2Q1KMD3 747 aaKnown RBP33.93■■■■□ 3.02
MCF2L-201ENST00000261963 CUX2O14529 1486 aa33.91■■■■□ 3.02
MCF2L-201ENST00000261963 IGF1RP08069 1367 aa33.88■■■■□ 3.01
MCF2L-201ENST00000261963 FGD5Q6ZNL6 1462 aa33.87■■■■□ 3.01
MCF2L-201ENST00000261963 ARHGAP35Q9NRY4 1499 aa33.8■■■■□ 3
MCF2L-201ENST00000261963 DIEXFQ68CQ4 756 aaKnown RBP33.79■■■■□ 3
MCF2L-201ENST00000261963 FANCD2Q9BXW9 1451 aa33.78■■■■□ 3
MCF2L-201ENST00000261963 KANK4Q5T7N3 995 aaPredicted RBP33.74■■■□□ 2.99
MCF2L-201ENST00000261963 CARMIL1Q5VZK9 1371 aa33.7■■■□□ 2.99
MCF2L-201ENST00000261963 DNMBPQ6XZF7 1577 aa33.61■■■□□ 2.97
MCF2L-201ENST00000261963 NESP48681 1621 aa33.6■■■□□ 2.97
MCF2L-201ENST00000261963 RRBP1Q9P2E9 1410 aaKnown RBP33.55■■■□□ 2.96
MCF2L-201ENST00000261963 TOPBP1Q92547 1522 aa33.55■■■□□ 2.96
MCF2L-201ENST00000261963 RAD54L2Q9Y4B4 1467 aa33.53■■■□□ 2.96
MCF2L-201ENST00000261963 POLA1P09884 1462 aaPredicted RBP33.52■■■□□ 2.96
MCF2L-201ENST00000261963 ABCA10Q8WWZ4 1543 aa33.52■■■□□ 2.96
MCF2L-201ENST00000261963 ZNF316A6NFI3 1004 aaPredicted RBP33.49■■■□□ 2.95
MCF2L-201ENST00000261963 MAP3K1Q13233 1512 aa33.4■■■□□ 2.94
MCF2L-201ENST00000261963 LAMC3Q9Y6N6 1575 aa33.39■■■□□ 2.94
MCF2L-201ENST00000261963 CCNB3Q8WWL7 1395 aa33.38■■■□□ 2.93
MCF2L-201ENST00000261963 TIAM1Q13009 1591 aa33.37■■■□□ 2.93
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms