RNA–Protein interactions for RNA: ENST00000259008.6

BRIP1-201, Transcript of BRCA1 interacting protein C-terminal helicase 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene BRIP1, Length 6,048 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRIP1-201ENST00000259008 DCAF8L2P0C7V8 631 aa11.95□□□□□ -0.5
BRIP1-201ENST00000259008 NISCHQ9Y2I1 1504 aa11.32□□□□□ -0.6
BRIP1-201ENST00000259008 SHROOM4Q9ULL8 1493 aa10.9□□□□□ -0.66
BRIP1-201ENST00000259008 SUPT5HO00267 1087 aaKnown RBP10.83□□□□□ -0.68
BRIP1-201ENST00000259008 EHMT2Q96KQ7 1210 aa10.66□□□□□ -0.7
BRIP1-201ENST00000259008 FAM9AQ8IZU1 332 aaPredicted RBP10.32□□□□□ -0.76
BRIP1-201ENST00000259008 RANGAP1P46060 587 aaPredicted RBP10.31□□□□□ -0.76
BRIP1-201ENST00000259008 ABCC9O60706 1549 aa10.29□□□□□ -0.76
BRIP1-201ENST00000259008 ATP1B4Q9UN42 357 aaPredicted RBP10.21□□□□□ -0.77
BRIP1-201ENST00000259008 APLP2Q06481 763 aa10.2□□□□□ -0.78
BRIP1-201ENST00000259008 TTBK1Q5TCY1 1321 aaPredicted RBP10.19□□□□□ -0.78
BRIP1-201ENST00000259008 PABPN1Q86U42 306 aaKnown RBP eCLIP10.17□□□□□ -0.78
BRIP1-201ENST00000259008 TRIM41Q8WV44 630 aa10.01□□□□□ -0.81
BRIP1-201ENST00000259008 MYT1LQ9UL68 1186 aa9.98□□□□□ -0.81
BRIP1-201ENST00000259008 UBTFP17480 764 aaKnown RBP9.96□□□□□ -0.82
BRIP1-201ENST00000259008 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP9.94□□□□□ -0.82
BRIP1-201ENST00000259008 HNRNPUL2Q1KMD3 747 aaKnown RBP9.94□□□□□ -0.82
BRIP1-201ENST00000259008 CHIC1Q5VXU3 224 aa9.85□□□□□ -0.83
BRIP1-201ENST00000259008 FBLN2P98095 1184 aa9.82□□□□□ -0.84
BRIP1-201ENST00000259008 PPARGC1BQ86YN6 1023 aaKnown RBP9.71□□□□□ -0.85
BRIP1-201ENST00000259008 PCGF6Q9BYE7 350 aa9.68□□□□□ -0.86
BRIP1-201ENST00000259008 ITGAEP38570 1179 aa9.66□□□□□ -0.86
BRIP1-201ENST00000259008 SCRIBQ14160 1630 aa9.65□□□□□ -0.86
BRIP1-201ENST00000259008 ARID3CA6NKF2 412 aa9.56□□□□□ -0.88
BRIP1-201ENST00000259008 PLPPR3Q6T4P5 718 aa9.55□□□□□ -0.88
BRIP1-201ENST00000259008 CCER1Q8TC90 406 aaPredicted RBP9.53□□□□□ -0.88
BRIP1-201ENST00000259008 POLR3GLQ9BT43 218 aa9.51□□□□□ -0.89
BRIP1-201ENST00000259008 SLC4A1APQ9BWU0 796 aaKnown RBP9.49□□□□□ -0.89
BRIP1-201ENST00000259008 RB1CC1Q8TDY2 1594 aa9.47□□□□□ -0.89
BRIP1-201ENST00000259008 CCDC180Q9P1Z9 1646 aa9.46□□□□□ -0.89
BRIP1-201ENST00000259008 P3H3Q8IVL6 736 aa9.46□□□□□ -0.9
BRIP1-201ENST00000259008 BCANQ96GW7 911 aa9.43□□□□□ -0.9
BRIP1-201ENST00000259008 LOC105371045A0A1W2PR82 267 aa9.43□□□□□ -0.9
BRIP1-201ENST00000259008 FAM50AQ14320 339 aaKnown RBP9.43□□□□□ -0.9
BRIP1-201ENST00000259008 CNGB1Q14028 1251 aaPredicted RBP9.43□□□□□ -0.9
BRIP1-201ENST00000259008 NPM1P06748 294 aaKnown RBP eCLIP9.4□□□□□ -0.9
BRIP1-201ENST00000259008 TRIM52Q96A61 297 aa9.37□□□□□ -0.91
BRIP1-201ENST00000259008 ERCC6Q03468 1493 aa9.37□□□□□ -0.91
BRIP1-201ENST00000259008 ZNF777Q9ULD5 760 aaPredicted RBP9.36□□□□□ -0.91
BRIP1-201ENST00000259008 ESF1Q9H501 851 aaKnown RBP9.36□□□□□ -0.91
BRIP1-201ENST00000259008 CHMP7Q8WUX9 453 aaPredicted RBP9.33□□□□□ -0.92
BRIP1-201ENST00000259008 ZCCHC6Q5VYS8 1495 aaKnown RBP9.3□□□□□ -0.92
BRIP1-201ENST00000259008 TRHP20396 242 aaPredicted RBP9.27□□□□□ -0.93
BRIP1-201ENST00000259008 PELP1Q8IZL8 1130 aaKnown RBP9.27□□□□□ -0.93
BRIP1-201ENST00000259008 ZNF326Q5BKZ1 582 aaKnown RBP9.26□□□□□ -0.93
BRIP1-201ENST00000259008 NACADO15069 1562 aa9.25□□□□□ -0.93
BRIP1-201ENST00000259008 STAG3Q9UJ98 1225 aa9.24□□□□□ -0.93
BRIP1-201ENST00000259008 YTHDC1Q96MU7 727 aaKnown RBP9.21□□□□□ -0.94
BRIP1-201ENST00000259008 CHGAP10645 457 aaKnown RBP9.21□□□□□ -0.94
BRIP1-201ENST00000259008 NEUROD1Q13562 356 aa9.2□□□□□ -0.94
BRIP1-201ENST00000259008 CDK11AQ9UQ88 783 aaPredicted RBP9.19□□□□□ -0.94
BRIP1-201ENST00000259008 BAZ1BQ9UIG0 1483 aaKnown RBP9.19□□□□□ -0.94
BRIP1-201ENST00000259008 KCNH8Q96L42 1107 aa9.19□□□□□ -0.94
BRIP1-201ENST00000259008 SLC24A1O60721 1099 aa9.18□□□□□ -0.94
BRIP1-201ENST00000259008 ZEB1P37275 1124 aaPredicted RBP9.18□□□□□ -0.94
BRIP1-201ENST00000259008 SENP3Q9H4L4 574 aaPredicted RBP9.17□□□□□ -0.94
BRIP1-201ENST00000259008 ARID4BQ4LE39 1312 aaPredicted RBP9.17□□□□□ -0.94
BRIP1-201ENST00000259008 TRIM26Q12899 539 aaPredicted RBP9.15□□□□□ -0.94
BRIP1-201ENST00000259008 CSRNP3Q8WYN3 585 aa9.15□□□□□ -0.95
BRIP1-201ENST00000259008 GRWD1Q9BQ67 446 aaKnown RBP eCLIP9.13□□□□□ -0.959e-7■■■□□ 17.4
BRIP1-201ENST00000259008 SCAF1Q9H7N4 1312 aaKnown RBP9.11□□□□□ -0.95
BRIP1-201ENST00000259008 PLEKHG5O94827 1062 aa9.09□□□□□ -0.95
BRIP1-201ENST00000259008 NEFLP07196 543 aa9.05□□□□□ -0.96
BRIP1-201ENST00000259008 CHIC2Q9UKJ5 165 aa9.05□□□□□ -0.96
BRIP1-201ENST00000259008 CECR2Q9BXF3 1484 aa9.04□□□□□ -0.96
BRIP1-201ENST00000259008 A0A0G2JS52 829 aa9.02□□□□□ -0.97
BRIP1-201ENST00000259008 CENPBP07199 599 aaPredicted RBP9.02□□□□□ -0.97
BRIP1-201ENST00000259008 C14orf37Q86TY3 774 aa9.02□□□□□ -0.97
BRIP1-201ENST00000259008 ZBTB7CA1YPR0 619 aa9□□□□□ -0.97
BRIP1-201ENST00000259008 EIF4G1Q04637 1599 aaKnown RBP8.99□□□□□ -0.97
BRIP1-201ENST00000259008 ERICH6Q7L0X2 663 aa8.98□□□□□ -0.97
BRIP1-201ENST00000259008 PPP1R15AO75807 674 aaPredicted RBP8.98□□□□□ -0.97
BRIP1-201ENST00000259008 PLEKHD1A6NEE1 506 aa8.98□□□□□ -0.97
BRIP1-201ENST00000259008 MLECQ14165 292 aa8.98□□□□□ -0.97
BRIP1-201ENST00000259008 BCL11AQ9H165 835 aa8.97□□□□□ -0.97
BRIP1-201ENST00000259008 TSPY4P0CV99 314 aa8.97□□□□□ -0.97
BRIP1-201ENST00000259008 TSPY10P0CW01 314 aa8.97□□□□□ -0.97
BRIP1-201ENST00000259008 RSF1Q96T23 1441 aaPredicted RBP8.95□□□□□ -0.98
BRIP1-201ENST00000259008 MTUS2Q5JR59 1369 aa8.95□□□□□ -0.98
BRIP1-201ENST00000259008 BAZ1AQ9NRL2 1556 aaPredicted RBP8.95□□□□□ -0.98
BRIP1-201ENST00000259008 PDS5BQ9NTI5 1447 aa8.93□□□□□ -0.98
BRIP1-201ENST00000259008 NEFMP07197 916 aa8.93□□□□□ -0.98
BRIP1-201ENST00000259008 HAP1P54257 671 aaPredicted RBP8.92□□□□□ -0.98
BRIP1-201ENST00000259008 AEBP2Q6ZN18 517 aaPredicted RBP8.92□□□□□ -0.98
BRIP1-201ENST00000259008 WRNQ14191 1432 aaPredicted RBP eCLIP8.91□□□□□ -0.986e-6■■■□□ 16.7
BRIP1-201ENST00000259008 KDM2AQ9Y2K7 1162 aa8.9□□□□□ -0.98
BRIP1-201ENST00000259008 SMARCA2P51531 1590 aa8.89□□□□□ -0.99
BRIP1-201ENST00000259008 KIF27Q86VH2 1401 aa8.88□□□□□ -0.99
BRIP1-201ENST00000259008 RRP7BPQ9NSQ0 103 aa8.87□□□□□ -0.99
BRIP1-201ENST00000259008 CYB5RLQ6IPT4 315 aa8.86□□□□□ -0.99
BRIP1-201ENST00000259008 CUX2O14529 1486 aa8.86□□□□□ -0.99
BRIP1-201ENST00000259008 CFDP1Q9UEE9 299 aaPredicted RBP8.85□□□□□ -0.99
BRIP1-201ENST00000259008 CLSPNQ9HAW4 1339 aa8.85□□□□□ -0.99
BRIP1-201ENST00000259008 TDRD9Q8NDG6 1382 aaKnown RBP8.84□□□□□ -0.99
BRIP1-201ENST00000259008 MYT1Q01538 1121 aa8.84□□□□□ -1
BRIP1-201ENST00000259008 LMOD2Q6P5Q4 547 aa8.84□□□□□ -1
BRIP1-201ENST00000259008 HRCP23327 699 aa8.83□□□□□ -1
BRIP1-201ENST00000259008 SOGA1O94964 1423 aa8.82□□□□□ -1
BRIP1-201ENST00000259008 CANXP27824 592 aaKnown RBP8.82□□□□□ -1
BRIP1-201ENST00000259008 DAXXQ9UER7 740 aaPredicted RBP8.82□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms