RNA–Protein interactions for RNA: ENST00000247003.8

DDX49-201, Transcript of DEAD-box helicase 49, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene DDX49, Length 1,830 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX49-201ENST00000247003 NISCHQ9Y2I1 1504 aa32.7■■■□□ 2.83
DDX49-201ENST00000247003 CCDC180Q9P1Z9 1646 aa28.28■■■□□ 2.12
DDX49-201ENST00000247003 ZCCHC6Q5VYS8 1495 aaKnown RBP27.6■■■□□ 2.01
DDX49-201ENST00000247003 SHROOM4Q9ULL8 1493 aa27.2■■□□□ 1.94
DDX49-201ENST00000247003 DCAF1Q9Y4B6 1507 aa27.01■■□□□ 1.92
DDX49-201ENST00000247003 DCAF8L2P0C7V8 631 aa26.93■■□□□ 1.9
DDX49-201ENST00000247003 ABCC9O60706 1549 aa26.46■■□□□ 1.83
DDX49-201ENST00000247003 MYO15BQ96JP2 1530 aa26.46■■□□□ 1.83
DDX49-201ENST00000247003 SUPT5HO00267 1087 aaKnown RBP26.46■■□□□ 1.83
DDX49-201ENST00000247003 NACADO15069 1562 aa26.18■■□□□ 1.78
DDX49-201ENST00000247003 SCRIBQ14160 1630 aa26.15■■□□□ 1.78
DDX49-201ENST00000247003 RB1CC1Q8TDY2 1594 aa25.86■■□□□ 1.73
DDX49-201ENST00000247003 RSF1Q96T23 1441 aaPredicted RBP25.58■■□□□ 1.69
DDX49-201ENST00000247003 CHIC1Q5VXU3 224 aa25.55■■□□□ 1.68
DDX49-201ENST00000247003 UNC13AQ9UPW8 1703 aa25.35■■□□□ 1.65
DDX49-201ENST00000247003 CECR2Q9BXF3 1484 aa25.35■■□□□ 1.65
DDX49-201ENST00000247003 MROH2BQ7Z745 1585 aa25.3■■□□□ 1.64
DDX49-201ENST00000247003 BAZ1AQ9NRL2 1556 aaPredicted RBP25.25■■□□□ 1.63
DDX49-201ENST00000247003 WIZO95785 1651 aa25.16■■□□□ 1.62
DDX49-201ENST00000247003 SMARCA4P51532 1647 aa25.06■■□□□ 1.6
DDX49-201ENST00000247003 BICRAQ9NZM4 1560 aa25.03■■□□□ 1.6
DDX49-201ENST00000247003 TOP2AP11388 1531 aaKnown RBP24.91■■□□□ 1.58
DDX49-201ENST00000247003 PABPN1Q86U42 306 aaKnown RBP eCLIP24.86■■□□□ 1.57
DDX49-201ENST00000247003 TRIM41Q8WV44 630 aa24.82■■□□□ 1.56
DDX49-201ENST00000247003 EIF4G1Q04637 1599 aaKnown RBP24.7■■□□□ 1.54
DDX49-201ENST00000247003 SMARCA2P51531 1590 aa24.68■■□□□ 1.54
DDX49-201ENST00000247003 PEG3Q9GZU2 1588 aa24.67■■□□□ 1.54
DDX49-201ENST00000247003 CCDC88BA6NC98 1476 aa24.63■■□□□ 1.53
DDX49-201ENST00000247003 LOC105371045A0A1W2PR82 267 aa24.61■■□□□ 1.53
DDX49-201ENST00000247003 ATAD2BQ9ULI0 1458 aa24.45■■□□□ 1.5
DDX49-201ENST00000247003 BAZ1BQ9UIG0 1483 aaKnown RBP24.42■■□□□ 1.5
DDX49-201ENST00000247003 FAM9AQ8IZU1 332 aaPredicted RBP24.41■■□□□ 1.5
DDX49-201ENST00000247003 ABCC8Q09428 1581 aa24.36■■□□□ 1.49
DDX49-201ENST00000247003 PCGF6Q9BYE7 350 aa24.19■■□□□ 1.46
DDX49-201ENST00000247003 HMGXB3Q12766 1538 aa24.19■■□□□ 1.46
DDX49-201ENST00000247003 WRNQ14191 1432 aaPredicted RBP eCLIP24.12■■□□□ 1.45
DDX49-201ENST00000247003 NCAPD3P42695 1498 aa24.11■■□□□ 1.45
DDX49-201ENST00000247003 EEA1Q15075 1411 aa24.1■■□□□ 1.45
DDX49-201ENST00000247003 EHMT2Q96KQ7 1210 aa24.09■■□□□ 1.45
DDX49-201ENST00000247003 TRIM26Q12899 539 aaPredicted RBP24.03■■□□□ 1.44
DDX49-201ENST00000247003 CC2D2AQ9P2K1 1620 aa24■■□□□ 1.43
DDX49-201ENST00000247003 SYNJ1O43426 1573 aa23.99■■□□□ 1.43
DDX49-201ENST00000247003 SOGA1O94964 1423 aa23.99■■□□□ 1.43
DDX49-201ENST00000247003 HRCP23327 699 aa23.96■■□□□ 1.43
DDX49-201ENST00000247003 CSRNP3Q8WYN3 585 aa23.88■■□□□ 1.41
DDX49-201ENST00000247003 TOP2BQ02880 1626 aa23.86■■□□□ 1.41
DDX49-201ENST00000247003 RUSC2Q8N2Y8 1516 aa23.84■■□□□ 1.41
DDX49-201ENST00000247003 GOLGA3Q08378 1498 aa23.82■■□□□ 1.4
DDX49-201ENST00000247003 BIVM-ERCC5R4GMW8 1640 aa23.82■■□□□ 1.4
DDX49-201ENST00000247003 TNIKQ9UKE5 1360 aa23.8■■□□□ 1.4
DDX49-201ENST00000247003 PRDM2Q13029 1718 aa23.78■■□□□ 1.4
DDX49-201ENST00000247003 CFTRP13569 1480 aa23.77■■□□□ 1.4
DDX49-201ENST00000247003 CEP162Q5TB80 1403 aa23.77■■□□□ 1.4
DDX49-201ENST00000247003 KIF21BO75037 1637 aa23.76■■□□□ 1.39
DDX49-201ENST00000247003 CEP164Q9UPV0 1460 aa23.75■■□□□ 1.39
DDX49-201ENST00000247003 UBTFP17480 764 aaKnown RBP23.7■■□□□ 1.39
DDX49-201ENST00000247003 CUX1P39880 1505 aa23.62■■□□□ 1.37
DDX49-201ENST00000247003 DNAJC5BQ9UF47 199 aa23.61■■□□□ 1.37
DDX49-201ENST00000247003 CADPSQ9ULU8 1353 aa23.57■■□□□ 1.36
DDX49-201ENST00000247003 RAPGEF2Q9Y4G8 1499 aa23.49■■□□□ 1.35
DDX49-201ENST00000247003 ERICH3Q5RHP9 1530 aa23.49■■□□□ 1.35
DDX49-201ENST00000247003 PPARGC1BQ86YN6 1023 aaKnown RBP23.47■■□□□ 1.35
DDX49-201ENST00000247003 KIF27Q86VH2 1401 aa23.47■■□□□ 1.35
DDX49-201ENST00000247003 CLIP1P30622 1438 aa23.44■■□□□ 1.34
DDX49-201ENST00000247003 ZEB1P37275 1124 aaPredicted RBP23.42■■□□□ 1.34
DDX49-201ENST00000247003 PRXQ9BXM0 1461 aa23.4■■□□□ 1.34
DDX49-201ENST00000247003 FANCD2Q9BXW9 1451 aa23.35■■□□□ 1.33
DDX49-201ENST00000247003 VPS8Q8N3P4 1428 aa23.32■■□□□ 1.32
DDX49-201ENST00000247003 FGD5Q6ZNL6 1462 aa23.3■■□□□ 1.32
DDX49-201ENST00000247003 CUX2O14529 1486 aa23.28■■□□□ 1.32
DDX49-201ENST00000247003 LAMC3Q9Y6N6 1575 aa23.27■■□□□ 1.32
DDX49-201ENST00000247003 DNMBPQ6XZF7 1577 aa23.26■■□□□ 1.31
DDX49-201ENST00000247003 TTBK1Q5TCY1 1321 aaPredicted RBP23.24■■□□□ 1.31
DDX49-201ENST00000247003 APLP2Q06481 763 aa23.2■■□□□ 1.3
DDX49-201ENST00000247003 NESP48681 1621 aa23.19■■□□□ 1.3
DDX49-201ENST00000247003 RANGAP1P46060 587 aaPredicted RBP23.18■■□□□ 1.3
DDX49-201ENST00000247003 TOPBP1Q92547 1522 aa23.15■■□□□ 1.3
DDX49-201ENST00000247003 IGF1RP08069 1367 aa23.11■■□□□ 1.29
DDX49-201ENST00000247003 ARAP1Q96P48 1450 aa23.11■■□□□ 1.29
DDX49-201ENST00000247003 POLA1P09884 1462 aaPredicted RBP23.09■■□□□ 1.29
DDX49-201ENST00000247003 ABCA10Q8WWZ4 1543 aa23.08■■□□□ 1.28
DDX49-201ENST00000247003 PDS5BQ9NTI5 1447 aa23.07■■□□□ 1.28
DDX49-201ENST00000247003 CARMIL1Q5VZK9 1371 aa23.06■■□□□ 1.28
DDX49-201ENST00000247003 CCER1Q8TC90 406 aaPredicted RBP23.04■■□□□ 1.28
DDX49-201ENST00000247003 RAD54L2Q9Y4B4 1467 aa23.01■■□□□ 1.27
DDX49-201ENST00000247003 CUL7Q14999 1698 aa23■■□□□ 1.27
DDX49-201ENST00000247003 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23■■□□□ 1.27
DDX49-201ENST00000247003 URB2Q14146 1524 aaKnown RBP23■■□□□ 1.27
DDX49-201ENST00000247003 ARHGAP35Q9NRY4 1499 aa22.99■■□□□ 1.27
DDX49-201ENST00000247003 WDR97A6NE52 1622 aa22.98■■□□□ 1.27
DDX49-201ENST00000247003 KIF21AQ7Z4S6 1674 aa22.97■■□□□ 1.27
DDX49-201ENST00000247003 ABCA5Q8WWZ7 1642 aa22.86■■□□□ 1.25
DDX49-201ENST00000247003 CTTNBP2Q8WZ74 1663 aa22.86■■□□□ 1.25
DDX49-201ENST00000247003 EFCAB5A4FU69 1503 aa22.8■■□□□ 1.24
DDX49-201ENST00000247003 GAPVD1Q14C86 1478 aa22.79■■□□□ 1.24
DDX49-201ENST00000247003 FHAD1B1AJZ9 1412 aa22.79■■□□□ 1.24
DDX49-201ENST00000247003 HNRNPUL2Q1KMD3 747 aaKnown RBP22.79■■□□□ 1.24
DDX49-201ENST00000247003 MAP3K1Q13233 1512 aa22.77■■□□□ 1.24
DDX49-201ENST00000247003 TIAM1Q13009 1591 aa22.75■■□□□ 1.23
DDX49-201ENST00000247003 TARBP1Q13395 1621 aaKnown RBP22.74■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 80.2 ms