RNA–Protein interactions for RNA: ENST00000229854.11

MCM3-201, Transcript of minichromosome maintenance complex component 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MCM3, Length 3,083 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCM3-201ENST00000229854 NISCHQ9Y2I1 1504 aa20.84■□□□□ 0.93
MCM3-201ENST00000229854 CCDC180Q9P1Z9 1646 aa17.97■□□□□ 0.47
MCM3-201ENST00000229854 ZCCHC6Q5VYS8 1495 aaKnown RBP17.68■□□□□ 0.42
MCM3-201ENST00000229854 HRCP23327 699 aa17.44■□□□□ 0.38
MCM3-201ENST00000229854 DCAF1Q9Y4B6 1507 aa17.29■□□□□ 0.36
MCM3-201ENST00000229854 SHROOM4Q9ULL8 1493 aa17.28■□□□□ 0.36
MCM3-201ENST00000229854 PPARGC1BQ86YN6 1023 aaKnown RBP17.17■□□□□ 0.34
MCM3-201ENST00000229854 PCGF6Q9BYE7 350 aa17.13■□□□□ 0.33
MCM3-201ENST00000229854 SUPT5HO00267 1087 aaKnown RBP17.12■□□□□ 0.33
MCM3-201ENST00000229854 PELP1Q8IZL8 1130 aaKnown RBP17■□□□□ 0.31
MCM3-201ENST00000229854 MYO15BQ96JP2 1530 aa16.84■□□□□ 0.29
MCM3-201ENST00000229854 CHIC1Q5VXU3 224 aa16.75■□□□□ 0.27
MCM3-201ENST00000229854 ABCC9O60706 1549 aa16.71■□□□□ 0.27
MCM3-201ENST00000229854 DCAF8L2P0C7V8 631 aa16.67■□□□□ 0.26
MCM3-201ENST00000229854 SCAF1Q9H7N4 1312 aaKnown RBP16.59■□□□□ 0.25
MCM3-201ENST00000229854 SCRIBQ14160 1630 aa16.53■□□□□ 0.24
MCM3-201ENST00000229854 NACADO15069 1562 aa16.5■□□□□ 0.23
MCM3-201ENST00000229854 LOC105371045A0A1W2PR82 267 aa16.47■□□□□ 0.23
MCM3-201ENST00000229854 TRIM26Q12899 539 aaPredicted RBP16.47■□□□□ 0.23
MCM3-201ENST00000229854 RSF1Q96T23 1441 aaPredicted RBP16.39■□□□□ 0.21
MCM3-201ENST00000229854 ZEB1P37275 1124 aaPredicted RBP16.37■□□□□ 0.21
MCM3-201ENST00000229854 MYT1Q01538 1121 aa16.36■□□□□ 0.21
MCM3-201ENST00000229854 RB1CC1Q8TDY2 1594 aa16.3■□□□□ 0.2
MCM3-201ENST00000229854 ACIN1Q9UKV3 1341 aaKnown RBP16.15■□□□□ 0.18
MCM3-201ENST00000229854 MROH2BQ7Z745 1585 aa16.15■□□□□ 0.18
MCM3-201ENST00000229854 CECR2Q9BXF3 1484 aa16.14■□□□□ 0.17
MCM3-201ENST00000229854 UNC13AQ9UPW8 1703 aa16.12■□□□□ 0.17
MCM3-201ENST00000229854 NEUROD1Q13562 356 aa16.12■□□□□ 0.17
MCM3-201ENST00000229854 BAZ1AQ9NRL2 1556 aaPredicted RBP16.09■□□□□ 0.17
MCM3-201ENST00000229854 WIZO95785 1651 aa16.09■□□□□ 0.17
MCM3-201ENST00000229854 GTF3C3Q9Y5Q9 886 aa16.08■□□□□ 0.16
MCM3-201ENST00000229854 EIF4G1Q04637 1599 aaKnown RBP16.06■□□□□ 0.16
MCM3-201ENST00000229854 CENPBP07199 599 aaPredicted RBP15.98■□□□□ 0.15
MCM3-201ENST00000229854 SMARCA4P51532 1647 aa15.93■□□□□ 0.14
MCM3-201ENST00000229854 TOP2AP11388 1531 aaKnown RBP15.9■□□□□ 0.14
MCM3-201ENST00000229854 EHMT2Q96KQ7 1210 aa15.89■□□□□ 0.13
MCM3-201ENST00000229854 FAM9AQ8IZU1 332 aaPredicted RBP15.87■□□□□ 0.13
MCM3-201ENST00000229854 DIEXFQ68CQ4 756 aaKnown RBP15.85■□□□□ 0.13
MCM3-201ENST00000229854 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.83■□□□□ 0.13
MCM3-201ENST00000229854 CCER1Q8TC90 406 aaPredicted RBP15.83■□□□□ 0.12
MCM3-201ENST00000229854 BICRAQ9NZM4 1560 aa15.83■□□□□ 0.12
MCM3-201ENST00000229854 SMARCA2P51531 1590 aa15.8■□□□□ 0.12
MCM3-201ENST00000229854 TRIM41Q8WV44 630 aa15.8■□□□□ 0.12
MCM3-201ENST00000229854 PEG3Q9GZU2 1588 aa15.77■□□□□ 0.11
MCM3-201ENST00000229854 YTHDC1Q96MU7 727 aaKnown RBP15.72■□□□□ 0.11
MCM3-201ENST00000229854 CCDC88BA6NC98 1476 aa15.71■□□□□ 0.11
MCM3-201ENST00000229854 ABCC8Q09428 1581 aa15.6■□□□□ 0.09
MCM3-201ENST00000229854 TTBK1Q5TCY1 1321 aaPredicted RBP15.52■□□□□ 0.08
MCM3-201ENST00000229854 ZNF316A6NFI3 1004 aaPredicted RBP15.49■□□□□ 0.07
MCM3-201ENST00000229854 ATAD2BQ9ULI0 1458 aa15.45■□□□□ 0.06
MCM3-201ENST00000229854 EEA1Q15075 1411 aa15.44■□□□□ 0.06
MCM3-201ENST00000229854 WRNQ14191 1432 aaPredicted RBP eCLIP15.43■□□□□ 0.06
MCM3-201ENST00000229854 MIER1Q8N108 512 aa15.43■□□□□ 0.06
MCM3-201ENST00000229854 SOGA1O94964 1423 aa15.39■□□□□ 0.05
MCM3-201ENST00000229854 SYNJ1O43426 1573 aa15.39■□□□□ 0.05
MCM3-201ENST00000229854 PABPN1Q86U42 306 aaKnown RBP eCLIP15.38■□□□□ 0.05
MCM3-201ENST00000229854 BCL11AQ9H165 835 aa15.35■□□□□ 0.05
MCM3-201ENST00000229854 BAZ1BQ9UIG0 1483 aaKnown RBP15.35■□□□□ 0.05
MCM3-201ENST00000229854 KIF21BO75037 1637 aa15.34■□□□□ 0.05
MCM3-201ENST00000229854 TNIKQ9UKE5 1360 aa15.34■□□□□ 0.05
MCM3-201ENST00000229854 RUSC2Q8N2Y8 1516 aa15.34■□□□□ 0.05
MCM3-201ENST00000229854 CEP162Q5TB80 1403 aa15.31■□□□□ 0.04
MCM3-201ENST00000229854 HMGXB3Q12766 1538 aa15.29■□□□□ 0.04
MCM3-201ENST00000229854 BIVM-ERCC5R4GMW8 1640 aa15.29■□□□□ 0.04
MCM3-201ENST00000229854 ANP32EQ9BTT0 268 aa15.29■□□□□ 0.04
MCM3-201ENST00000229854 TOP2BQ02880 1626 aa15.27■□□□□ 0.04
MCM3-201ENST00000229854 GOLGA3Q08378 1498 aa15.27■□□□□ 0.03
MCM3-201ENST00000229854 SUPT16HQ9Y5B9 1047 aaKnown RBP15.22■□□□□ 0.03
MCM3-201ENST00000229854 CSRNP3Q8WYN3 585 aa15.22■□□□□ 0.03
MCM3-201ENST00000229854 NCAPD3P42695 1498 aa15.21■□□□□ 0.03
MCM3-201ENST00000229854 CEP164Q9UPV0 1460 aa15.2■□□□□ 0.02
MCM3-201ENST00000229854 PRDM2Q13029 1718 aa15.19■□□□□ 0.02
MCM3-201ENST00000229854 TSHZ2Q9NRE2 1034 aa15.19■□□□□ 0.02
MCM3-201ENST00000229854 HNRNPUL2Q1KMD3 747 aaKnown RBP15.12■□□□□ 0.01
MCM3-201ENST00000229854 CLSPNQ9HAW4 1339 aa15.11■□□□□ 0.01
MCM3-201ENST00000229854 ERICH3Q5RHP9 1530 aa15.09■□□□□ 0.01
MCM3-201ENST00000229854 RAPGEF2Q9Y4G8 1499 aa15.06■□□□□ 0
MCM3-201ENST00000229854 CUX1P39880 1505 aa15.06■□□□□ 0
MCM3-201ENST00000229854 CFTRP13569 1480 aa15.06■□□□□ 0
MCM3-201ENST00000229854 PRXQ9BXM0 1461 aa15.04■□□□□ -0
MCM3-201ENST00000229854 BCANQ96GW7 911 aa15.02□□□□□ -0.01
MCM3-201ENST00000229854 VPS8Q8N3P4 1428 aa15.02□□□□□ -0.01
MCM3-201ENST00000229854 CLIP1P30622 1438 aa15.01□□□□□ -0.01
MCM3-201ENST00000229854 UBTFP17480 764 aaKnown RBP14.99□□□□□ -0.01
MCM3-201ENST00000229854 ARAP1Q96P48 1450 aa14.91□□□□□ -0.02
MCM3-201ENST00000229854 FKBP8Q14318 412 aa14.87□□□□□ -0.03
MCM3-201ENST00000229854 KIF27Q86VH2 1401 aa14.86□□□□□ -0.03
MCM3-201ENST00000229854 RBM19Q9Y4C8 960 aaKnown RBP14.84□□□□□ -0.03
MCM3-201ENST00000229854 CC2D2AQ9P2K1 1620 aa14.84□□□□□ -0.03
MCM3-201ENST00000229854 KCNH8Q96L42 1107 aa14.81□□□□□ -0.04
MCM3-201ENST00000229854 APLP2Q06481 763 aa14.8□□□□□ -0.04
MCM3-201ENST00000229854 CADPSQ9ULU8 1353 aa14.8□□□□□ -0.04
MCM3-201ENST00000229854 NEFLP07196 543 aa14.77□□□□□ -0.05
MCM3-201ENST00000229854 ARHGAP35Q9NRY4 1499 aa14.77□□□□□ -0.05
MCM3-201ENST00000229854 ITGAEP38570 1179 aa14.77□□□□□ -0.05
MCM3-201ENST00000229854 PRKCSHP14314 528 aaPredicted RBP14.74□□□□□ -0.05
MCM3-201ENST00000229854 FGD5Q6ZNL6 1462 aa14.74□□□□□ -0.05
MCM3-201ENST00000229854 RANGAP1P46060 587 aaPredicted RBP14.73□□□□□ -0.05
MCM3-201ENST00000229854 ERICH6Q7L0X2 663 aa14.73□□□□□ -0.05
MCM3-201ENST00000229854 RRBP1Q9P2E9 1410 aaKnown RBP14.72□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms