RNA–Protein interactions for RNA: ENST00000216484.6

SPTLC2-201, Transcript of serine palmitoyltransferase long chain base subunit 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTLC2, Length 8,170 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC2-201ENST00000216484 DCAF8L2P0C7V8 631 aa24.24■■□□□ 1.47
SPTLC2-201ENST00000216484 PELP1Q8IZL8 1130 aaKnown RBP24.11■■□□□ 1.45
SPTLC2-201ENST00000216484 ERICH6Q7L0X2 663 aa23.35■■□□□ 1.33
SPTLC2-201ENST00000216484 EHMT2Q96KQ7 1210 aa23.09■■□□□ 1.29
SPTLC2-201ENST00000216484 CCER1Q8TC90 406 aaPredicted RBP23■■□□□ 1.27
SPTLC2-201ENST00000216484 SUPT5HO00267 1087 aaKnown RBP22.92■■□□□ 1.26
SPTLC2-201ENST00000216484 MYT1Q01538 1121 aa22.75■■□□□ 1.23
SPTLC2-201ENST00000216484 APLP2Q06481 763 aa22.67■■□□□ 1.22
SPTLC2-201ENST00000216484 CENPBP07199 599 aaPredicted RBP22.49■■□□□ 1.19
SPTLC2-201ENST00000216484 TTBK1Q5TCY1 1321 aaPredicted RBP22.39■■□□□ 1.18
SPTLC2-201ENST00000216484 FAM9AQ8IZU1 332 aaPredicted RBP22.32■■□□□ 1.16
SPTLC2-201ENST00000216484 NEFLP07196 543 aa22.27■■□□□ 1.16
SPTLC2-201ENST00000216484 PCGF6Q9BYE7 350 aa22.21■■□□□ 1.15
SPTLC2-201ENST00000216484 SHROOM4Q9ULL8 1493 aa22.16■■□□□ 1.14
SPTLC2-201ENST00000216484 DAXXQ9UER7 740 aaPredicted RBP22.15■■□□□ 1.14
SPTLC2-201ENST00000216484 YTHDC1Q96MU7 727 aaKnown RBP22.04■■□□□ 1.12
SPTLC2-201ENST00000216484 RANGAP1P46060 587 aaPredicted RBP21.89■■□□□ 1.09
SPTLC2-201ENST00000216484 ATP1B4Q9UN42 357 aaPredicted RBP21.89■■□□□ 1.09
SPTLC2-201ENST00000216484 ZEB1P37275 1124 aaPredicted RBP21.78■■□□□ 1.08
SPTLC2-201ENST00000216484 ZNF316A6NFI3 1004 aaPredicted RBP21.55■■□□□ 1.04
SPTLC2-201ENST00000216484 RTL5Q5HYW3 569 aaPredicted RBP21.48■■□□□ 1.03
SPTLC2-201ENST00000216484 POLR3GLQ9BT43 218 aa21.44■■□□□ 1.02
SPTLC2-201ENST00000216484 CLSPNQ9HAW4 1339 aa21.35■■□□□ 1.01
SPTLC2-201ENST00000216484 CNGB1Q14028 1251 aaPredicted RBP21.3■■□□□ 1
SPTLC2-201ENST00000216484 UBTFP17480 764 aaKnown RBP21.24■□□□□ 0.99
SPTLC2-201ENST00000216484 MYT1LQ9UL68 1186 aa21.22■□□□□ 0.99
SPTLC2-201ENST00000216484 SLC4A1APQ9BWU0 796 aaKnown RBP21.22■□□□□ 0.99
SPTLC2-201ENST00000216484 CHIC1Q5VXU3 224 aa21.13■□□□□ 0.97
SPTLC2-201ENST00000216484 TRIM41Q8WV44 630 aa21.07■□□□□ 0.96
SPTLC2-201ENST00000216484 PPARGC1BQ86YN6 1023 aaKnown RBP21.07■□□□□ 0.96
SPTLC2-201ENST00000216484 ITGAEP38570 1179 aa20.93■□□□□ 0.94
SPTLC2-201ENST00000216484 BCL11AQ9H165 835 aa20.82■□□□□ 0.92
SPTLC2-201ENST00000216484 ZBTB47Q9UFB7 747 aaPredicted RBP20.82■□□□□ 0.92
SPTLC2-201ENST00000216484 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.81■□□□□ 0.92
SPTLC2-201ENST00000216484 HNRNPUL2Q1KMD3 747 aaKnown RBP20.81■□□□□ 0.92
SPTLC2-201ENST00000216484 EIF5BO60841 1220 aaKnown RBP20.76■□□□□ 0.91
SPTLC2-201ENST00000216484 SLC24A1O60721 1099 aa20.72■□□□□ 0.91
SPTLC2-201ENST00000216484 HRCP23327 699 aa20.72■□□□□ 0.91
SPTLC2-201ENST00000216484 TRIM26Q12899 539 aaPredicted RBP20.65■□□□□ 0.9
SPTLC2-201ENST00000216484 BCANQ96GW7 911 aa20.61■□□□□ 0.89
SPTLC2-201ENST00000216484 CDK11AQ9UQ88 783 aaPredicted RBP20.61■□□□□ 0.89
SPTLC2-201ENST00000216484 GLIPR1L2Q4G1C9 344 aa20.58■□□□□ 0.89
SPTLC2-201ENST00000216484 ANP32BQ92688 251 aaKnown RBP20.55■□□□□ 0.88
SPTLC2-201ENST00000216484 CANXP27824 592 aaKnown RBP20.5■□□□□ 0.87
SPTLC2-201ENST00000216484 DIEXFQ68CQ4 756 aaKnown RBP20.5■□□□□ 0.87
SPTLC2-201ENST00000216484 NISCHQ9Y2I1 1504 aa20.45■□□□□ 0.86
SPTLC2-201ENST00000216484 ANP32AP39687 249 aaKnown RBP20.4■□□□□ 0.86
SPTLC2-201ENST00000216484 HSP90AA1P07900 732 aaKnown RBP20.35■□□□□ 0.85
SPTLC2-201ENST00000216484 NPM2Q86SE8 214 aaKnown RBP20.34■□□□□ 0.85
SPTLC2-201ENST00000216484 GTF3C3Q9Y5Q9 886 aa20.29■□□□□ 0.84
SPTLC2-201ENST00000216484 NEFMP07197 916 aa20.23■□□□□ 0.83
SPTLC2-201ENST00000216484 ANP32CO43423 234 aa20.22■□□□□ 0.83
SPTLC2-201ENST00000216484 NEUROD1Q13562 356 aa20.2■□□□□ 0.82
SPTLC2-201ENST00000216484 TRIM52Q96A61 297 aa20.18■□□□□ 0.82
SPTLC2-201ENST00000216484 ARXQ96QS3 562 aa20.17■□□□□ 0.82
SPTLC2-201ENST00000216484 FAM50AQ14320 339 aaKnown RBP20.17■□□□□ 0.82
SPTLC2-201ENST00000216484 ZNF326Q5BKZ1 582 aaKnown RBP20.16■□□□□ 0.82
SPTLC2-201ENST00000216484 CDK11BP21127 795 aaKnown RBP20.15■□□□□ 0.82
SPTLC2-201ENST00000216484 UPF2Q9HAU5 1272 aaKnown RBP20.06■□□□□ 0.8
SPTLC2-201ENST00000216484 NBR1Q14596 966 aa20.03■□□□□ 0.8
SPTLC2-201ENST00000216484 LOC105371045A0A1W2PR82 267 aa19.96■□□□□ 0.79
SPTLC2-201ENST00000216484 TNNT2P45379 298 aaPredicted RBP19.91■□□□□ 0.78
SPTLC2-201ENST00000216484 TRIM44Q96DX7 344 aaPredicted RBP19.76■□□□□ 0.75
SPTLC2-201ENST00000216484 TULP1O00294 542 aaPredicted RBP19.73■□□□□ 0.75
SPTLC2-201ENST00000216484 FKBP8Q14318 412 aa19.72■□□□□ 0.75
SPTLC2-201ENST00000216484 DNTTIP2Q5QJE6 756 aaKnown RBP19.65■□□□□ 0.74
SPTLC2-201ENST00000216484 SALL2Q9Y467 1007 aaPredicted RBP19.63■□□□□ 0.73
SPTLC2-201ENST00000216484 AMER1Q5JTC6 1135 aaPredicted RBP19.6■□□□□ 0.73
SPTLC2-201ENST00000216484 ACIN1Q9UKV3 1341 aaKnown RBP19.6■□□□□ 0.73
SPTLC2-201ENST00000216484 GOLGA6L2Q8N9W4 650 aaPredicted RBP19.59■□□□□ 0.73
SPTLC2-201ENST00000216484 NCLP19338 710 aaKnown RBP19.58■□□□□ 0.73
SPTLC2-201ENST00000216484 CCDC136Q96JN2 1154 aa19.55■□□□□ 0.72
SPTLC2-201ENST00000216484 PTMAP06454 111 aaKnown RBP19.55■□□□□ 0.72
SPTLC2-201ENST00000216484 ZRSR1Q15695 479 aaKnown RBP19.55■□□□□ 0.72
SPTLC2-201ENST00000216484 A0A0G2JS52 829 aa19.55■□□□□ 0.72
SPTLC2-201ENST00000216484 PLPPR3Q6T4P5 718 aa19.54■□□□□ 0.72
SPTLC2-201ENST00000216484 TPRNQ4KMQ1 711 aa19.54■□□□□ 0.72
SPTLC2-201ENST00000216484 NCBP3Q53F19 620 aaKnown RBP19.53■□□□□ 0.72
SPTLC2-201ENST00000216484 HNRNPUQ00839 825 aaKnown RBP eCLIP19.51■□□□□ 0.71
SPTLC2-201ENST00000216484 MYH16Q9H6N6 1097 aa19.51■□□□□ 0.71
SPTLC2-201ENST00000216484 FAM9BQ8IZU0 186 aa19.5■□□□□ 0.71
SPTLC2-201ENST00000216484 SCAF1Q9H7N4 1312 aaKnown RBP19.48■□□□□ 0.71
SPTLC2-201ENST00000216484 NAP1L5Q96NT1 182 aaPredicted RBP19.46■□□□□ 0.71
SPTLC2-201ENST00000216484 STAG3Q9UJ98 1225 aa19.46■□□□□ 0.71
SPTLC2-201ENST00000216484 ESF1Q9H501 851 aaKnown RBP19.45■□□□□ 0.7
SPTLC2-201ENST00000216484 GOLGA6L22H0YM25 854 aa19.44■□□□□ 0.7
SPTLC2-201ENST00000216484 BECN1Q14457 450 aa19.43■□□□□ 0.7
SPTLC2-201ENST00000216484 FBLN2P98095 1184 aa19.42■□□□□ 0.7
SPTLC2-201ENST00000216484 ANP32EQ9BTT0 268 aa19.38■□□□□ 0.69
SPTLC2-201ENST00000216484 CHGAP10645 457 aaKnown RBP19.38■□□□□ 0.69
SPTLC2-201ENST00000216484 TMC1Q8TDI8 760 aa19.35■□□□□ 0.69
SPTLC2-201ENST00000216484 DDRGK1Q96HY6 314 aa19.34■□□□□ 0.69
SPTLC2-201ENST00000216484 RTN4Q9NQC3 1192 aaKnown RBP19.34■□□□□ 0.69
SPTLC2-201ENST00000216484 WDR43Q15061 677 aaKnown RBP eCLIP19.34■□□□□ 0.69
SPTLC2-201ENST00000216484 TAOK2Q9UL54 1235 aa19.33■□□□□ 0.68
SPTLC2-201ENST00000216484 ARID3CA6NKF2 412 aa19.32■□□□□ 0.68
SPTLC2-201ENST00000216484 PLCB2Q00722 1185 aa19.32■□□□□ 0.68
SPTLC2-201ENST00000216484 ZNF777Q9ULD5 760 aaPredicted RBP19.3■□□□□ 0.68
SPTLC2-201ENST00000216484 IRX6P78412 446 aaPredicted RBP19.27■□□□□ 0.68
SPTLC2-201ENST00000216484 GOLGA6L6A8MZA4 724 aa19.26■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 96.8 ms